Writing a django command that imports from a directory of txt files into a database. The database is created, however when run I get the lovely, indescript error django.db.utils.ProgrammingError: (1064, "You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near '...path' at line 1"). I have no clue to what to investigate. When I try a singular file into the mysql portal, it seems to work. How can I make the jump to a Django command?
Below is the command code:
def handle(self, *args, **options):
self.stdout.write("\nStarting...")
with connections['wk'].cursor() as cursor:
db_name = settings.DATABASES['wk']['NAME']
for path in glob.glob(f'{options["p"]}/*[!.sql]'):
table_name = f'{db_name}.{path.rsplit("/")[-1].lower()}'
cursor.execute("LOAD DATA INFILE '%s' INTO TABLE %s", [path, table_name])
You should only let the connector do the substitution for data values, not for file names, table names, and field names. What happens here is that you get double quoting.
So:
cursor.execute("LOAD DATA INFILE '%s' INTO TABLE %s" % (path, table_name))
Or
cursor.execute(f"LOAD DATA INFILE '{path}' INTO TABLE {table_name}")
Related
I am trying to setup a python script to get some data and store it into a SQLite database. However when I am running the script a .fuse_hidden file is created.
On windows no .fuse_hidden file is observed but on ubuntu it generates at each call. The .fuse_hidden file seems to contain some form of sql query with input and tables.
I can delete the files without error during runtime but they are not deleted automatically. I make sure to end my connection to the db when I am finished with the query.
lsof give no information.
I am out of ideas on what to try next to get the files removed automatically. Any suggestions?
Testing
In order to confirm that it is nothing wrong with the code I made a simple script
(Assume there is an empty error.db)
import sqlite3
conn = sqlite3.connect("error.db")
cur = conn.cursor()
create_query = """
CREATE TABLE Errors (
name TEXT
);"""
try:
cur.execute(create_query)
except:
pass
cur.execute("INSERT INTO Errors (name) VALUES(?)", ["Test2"])
conn.commit()
cur.close()
conn.close()
Based on Python MySQLdb execute table variable and MySQL LOAD DATA LOCAL INFILE example in python? this should work:
import pymysql, os
directory = os.path.join('path', 'to', 'directory')
filename = 'my_filename.csv'
filepath = os.path.join(directory, filename)
to_table_name = "my_table"
connection = pymysql.connect(..., local_infile=True)
with connection.cursor() as cursor:
load_statement = """
load data local infile %s
into table %s
fields terminated by ','
optionally enclosed by '"'
lines terminated by '\\n'
ignore 1 lines
"""
cursor.execute(load_statement % (filepath, to_table_name, ))
connection.commit()
connection.close
But I'm still seeing this error:
ProgrammingError: (1064, "You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near '/path/to/directory/my_filename.csv\n into ' at line 1")
When I run this without the parameters i.e. writing the actual filepath and table name it works.
Any help would be much appreciated.
You should use the built in ability of Execute to do your string formatting also (this avoids MYSQL Injection attacks and errors) ... Rather than passing the parameters to the load_statement using % (String Interpolation) , pass that as parameters to execute
cursor.execute(load_statement , (filepath, to_table_name ))
Notice the comma instead of a %
My simple test code is listed below. I created the table already and can query it using the SQLite Manager add-in on Firefox so I know the table and data exist. When I run the query in python (and using the python shell) I get the no such table error
def TroyTest(self, acctno):
conn = sqlite3.connect('TroyData.db')
curs = conn.cursor()
v1 = curs.execute('''
SELECT acctvalue
FROM balancedata
WHERE acctno = ? ''', acctno)
print v1
conn.close()
When you pass SQLite a non-existing path, it'll happily open a new database for you, instead of telling you that the file did not exist before. When you do that, it'll be empty and you'll instead get a "No such table" error.
You are using a relative path to the database, meaning it'll try to open the database in the current directory, and that is probably not where you think it is..
The remedy is to use an absolute path instead:
conn = sqlite3.connect('/full/path/to/TroyData.db')
You need to loop over the cursor to see results:
curs.execute('''
SELECT acctvalue
FROM balancedata
WHERE acctno = ? ''', acctno)
for row in curs:
print row[0]
or call fetchone():
print curs.fetchone() # prints whole row tuple
The problem is the SQL statment. you must specify the db name and after the table name...
'''SELECT * FROM db_name.table_name WHERE acctno = ? '''
I have a .sql file with multiple insert statements ( 1000 + ) and I want to run the statements in this file into my Oracle database.
For now, im using a python with odbc to connect to my database with the following:
import pyodbc
from ConfigParser import SafeConfigParser
def db_call(self, cfgFile, sql):
parser = SafeConfigParser()
parser.read(cfgFile)
dsn = parser.get('odbc', 'dsn')
uid = parser.get('odbc', 'user')
pwd = parser.get('odbc', 'pass')
try:
con = pyodbc.connect('DSN=' + dsn + ';PWD=' + pwd + ';UID=' + pwd)
cur = con.cursor()
cur.execute(sql)
con.commit()
except pyodbc.DatabaseError, e:
print 'Error %s' % e
sys.exit(1)
finally:
if con and cur:
cur.close()
con.close()
with open('theFile.sql','r') as f:
cfgFile = 'c:\\dbinfo\\connectionInfo.cfg'
#here goes the code to insert the contents into the database using db_call_many
statements = f.read()
db_call(cfgFile,statements)
But when i run it i receive the following error:
pyodbc.Error: ('HY000', '[HY000] [Oracle][ODBC][Ora]ORA-00911: invalid character\n (911) (SQLExecDirectW)')
But all the content of the file are only:
INSERT INTO table (movie,genre) VALUES ('moviename','horror');
Edit
Adding print '<{}>'.format(statements) before the db_db_call(cfgFile,statements) i get the results(100+):
<INSERT INTO table (movie,genre) VALUES ('moviename','horror');INSERT INTO table (movie,genre) VALUES ('moviename_b','horror');INSERT INTO table (movie,genre) VALUES ('moviename_c','horror');>
Thanks for your time on reading this.
Now it's somewhat clarified - you have a lot of separate SQL statements such as INSERT INTO table (movie,genre) VALUES ('moviename','horror');
Then, you're effectively after cur.executescript() than the current state (I have no idea if pyodbc supports that part of the DB API, but any reason, you can't just execute an execute to the database itself?
When you read a file using read() function, the end line (\n) at the end of file is read too. I think you should use db_call(cfgFile,statements[:-1]) to eliminate the end line.
Is there a library or open source utility available to search all the tables and columns of an Sqlite database? The only input would be the name of the sqlite DB file.
I am trying to write a forensics tool and want to search sqlite files for a specific string.
Just dump the db and search it.
% sqlite3 file_name .dump | grep 'my_search_string'
You could instead pipe through less, and then use / to search:
% sqlite3 file_name .dump | less
You could use "SELECT name FROM sqlite_master WHERE type='table'"
to find out the names of the tables in the database. From there it is easy to SELECT all rows of each table.
For example:
import sqlite3
import os
filename = ...
with sqlite3.connect(filename) as conn:
conn.row_factory = sqlite3.Row
cursor = conn.cursor()
cursor.execute("SELECT name FROM sqlite_master WHERE type='table'")
for tablerow in cursor.fetchall():
table = tablerow[0]
cursor.execute("SELECT * FROM {t}".format(t = table))
for row in cursor:
for field in row.keys():
print(table, field, row[field])
I know this is late to the party, but I had a similar issue but since it was inside of a docker image I had no access to python, so I solved it like so:
for X in $(sqlite3 database.db .tables) ; do sqlite3 database.db "SELECT * FROM $X;" | grep >/dev/null 'STRING I WANT' && echo $X; done
This will iterate through all tables in a database file and perform a select all operation which I then grep for the string. If it finds the string, it prints the table, and from there I can simply use sqlite3 to find out how it was used.
Figured it might be helpful to other who cannot use python.
#MrWorf's answer didn't work for my sqlite file (an .exb file from Evernote) but this similar method worked:
Open the file with DB Browser for SQLite sqlitebrowser mynotes.exb
File / Export to SQL file (will create mynotes.exb.sql)
grep 'STRING I WANT" mynotes.exb.sql