Inserting string to string regularly ( 1234567891234 -> 1,2345,6789,1234 ) - python

How to insert ' # ' for each n index from backward?
ex) n=4
evil = '01234567891234oooooooooooooooo321'
to
stan = '0#1234#5678#9123#4ooo#oooo#oooo#oooo#o321'
i tried using list with for,if statement, got stuck. something shameful like this
a = 1234567891234
b = [ a[-i] for i in range(1,len(a)+1)]
for i in range(len(b)):
c += b[i]
if i%4==0: #stuck
c += ','
c.reverse()
What is the optimum way?

You might use a pattern asserting optional repetitions of 4 characters to the right, and replace that position with #
import re
pattern = r"(?=(?:.{4})*$)"
s = "01234567891234oooooooooooooooo321"
print(re.sub(pattern, "#", s))
Output
0#1234#5678#9123#4ooo#oooo#oooo#oooo#o321#
Python demo

cut the string into chunks (backwards) and then concat them using the seperator
evil = '01234567891234oooooooooooooooo321'
l = 4
sep = '#'
sep.join([evil[max(i-l,0):i] for i in range(len(evil), 0, -l)][::-1])
'0#1234#5678#9123#4ooo#oooo#oooo#oooo#o321'

chunks function as in this answer
def chunks(lst, n):
"""Yield successive n-sized chunks from lst."""
for i in range(0, len(lst), n):
yield lst[i:i + n]
evil = '01234567891234oooooooooooooooo321'
n = 4
stan = "#".join(chunks(evil[::-1], n))[::-1]
print(stan) # Output: 0#1234#5678#9123#4ooo#oooo#oooo#oooo#o321
Input string is reversed ([::-1]), split into chunks, joined by "#" and then reversed back again. (It's possible to skip reverses if you calculate how many characters there will be in the first set of characters)

A naive solution would be using parts of evil string:
evil = '01234567891234oooooooooooooooo321'
n = 4
start = len(evil) % n
insert = '#'
stan = evil[:start] + insert
for i in range(start, len(evil) - n, n):
stan += evil[i:i+n] + insert
stan += evil[-n:]

For this, I would go backwards through your string evil by reversing the string and iterating through it in a for loop. Then I set a count variable to keep track of how many loops it's done, and reset to 0 when it equals 4. All of this looks like the below:
count = 0
for char in evil[::-1]:
if count == 4:
count = 0
count += 1
You can then establish a new empty string (new_str), and append each character of evil to, each time checking if count is 4, and adding a # to the string as well before resetting the count. Full code:
count = 0
new_str = ''
for char in evil[::-1]:
if count == 4:
new_str += '#'
count = 0
count += 1
new_str += char
This will produce the new string reversed, so you need to reverse it again to get the desired result:
new_str = new_str[::-1]
Output:
'123o#oooo#oooo#oooo#ooo4#3219#8765#4321#0'

You can do it like this:
evil = '01234567891234oooooooooooooooo321'
''.join(j if i%4 else f'#{j}' for i, j in enumerate(evil[::-1]))[::-1][:-1]
Output:
'0#1234#5678#9123#4ooo#oooo#oooo#oooo#o321'

An exact method: use divmod to get the reminder and quotient of the string when divided in "blocks" of size 4 then slice.
evil = '01234567891234oooooooooooooooo321'
size = 4
q, r = divmod(len(evil), size)
sep = '#'
stan = f"{evil[:r]}{sep}{sep.join(evil[r+i*size: r+(i+1)*size] for i in range(q))}"
print(stan)
Remark: if the length of the string is a multiple of the block's size the new string will start with sep. Assumed as default behavior since lake of explanation

Related

Is there a way of splitting a word into 3 different parts in python?

char = "RV49CJ0AUTS172Y"
To get this output:
separated = "RV49C-J0AUT-S172Y"
I have tried:
split_strings = []
n = 5
for index in range(0, len(name), n):
split_strings.append(name[index : index + n])
But that did not go as I wanted
This shows a good method but I want them on the same line with dashes between them
You can do it in one-line, using re
import re
string = "RV49CJ0AUTS172Y"
separated = "-".join(re.findall('.{%d}' % (len(string) / 3), string))
print(separated)
[Output]
RV49C-J0AUT-S172Y
Your code almost works, just calculate the amount of characters needed (n) instead of hard-coding it to 5. And for the final result, use "-".join(...) to mix all the elements of the array together into a single string.
char = "RV49CJ0AUTS172Y"
split_strings = []
n = len(char) // 3
for index in range(0, len(char), n):
split_strings.append(char[index: index + n])
print("-".join(split_strings))

python intelligent hexadecimal numbers generator

I want to be able to generate 12 character long chain, of hexadecimal, BUT with no more than 2 identical numbers duplicate in the chain: 00 and not 000
Because, I know how to generate ALL possibilites, including 00000000000 to FFFFFFFFFFF, but I know that I won't use all those values, and because the size of the file generated with ALL possibilities is many GB long, I want to reduce the size by avoiding the not useful generated chains.
So my goal is to have results like 00A300BF8911 and not like 000300BF8911
Could you please help me to do so?
Many thanks in advance!
if you picked the same one twice, remove it from the choices for a round:
import random
hex_digits = set('0123456789ABCDEF')
result = ""
pick_from = hex_digits
for digit in range(12):
cur_digit = random.sample(hex_digits, 1)[0]
result += cur_digit
if result[-1] == cur_digit:
pick_from = hex_digits - set(cur_digit)
else:
pick_from = hex_digits
print(result)
Since the title mentions generators. Here's the above as a generator:
import random
hex_digits = set('0123456789ABCDEF')
def hexGen():
while True:
result = ""
pick_from = hex_digits
for digit in range(12):
cur_digit = random.sample(hex_digits, 1)[0]
result += cur_digit
if result[-1] == cur_digit:
pick_from = hex_digits - set(cur_digit)
else:
pick_from = hex_digits
yield result
my_hex_gen = hexGen()
counter = 0
for result in my_hex_gen:
print(result)
counter += 1
if counter > 10:
break
Results:
1ECC6A83EB14
D0897DE15E81
9C3E9028B0DE
CE74A2674AF0
9ECBD32C003D
0DF2E5DAC0FB
31C48E691C96
F33AAC2C2052
CD4CEDADD54D
40A329FF6E25
5F5D71F823A4
You could also change the while true loop to only produce a certain number of these based on a number passed into the function.
I interpret this question as, "I want to construct a rainbow table by iterating through all strings that have the following qualities. The string has a length of 12, contains only the characters 0-9 and A-F, and it never has the same character appearing three times in a row."
def iter_all_strings_without_triplicates(size, last_two_digits = (None, None)):
a,b = last_two_digits
if size == 0:
yield ""
else:
for c in "0123456789ABCDEF":
if a == b == c:
continue
else:
for rest in iter_all_strings_without_triplicates(size-1, (b,c)):
yield c + rest
for s in iter_all_strings_without_triplicates(12):
print(s)
Result:
001001001001
001001001002
001001001003
001001001004
001001001005
001001001006
001001001007
001001001008
001001001009
00100100100A
00100100100B
00100100100C
00100100100D
00100100100E
00100100100F
001001001010
001001001011
...
Note that there will be several hundred terabytes' worth of values outputted, so you aren't saving much room compared to just saving every single string, triplicates or not.
import string, random
source = string.hexdigits[:16]
result = ''
while len(result) < 12 :
idx = random.randint(0,len(source))
if len(result) < 3 or result[-1] != result[-2] or result[-1] != source[idx] :
result += source[idx]
You could extract a random sequence from a list of twice each hexadecimal digits:
digits = list('1234567890ABCDEF') * 2
random.shuffle(digits)
hex_number = ''.join(digits[:12])
If you wanted to allow shorter sequences, you could randomize that too, and left fill the blanks with zeros.
import random
digits = list('1234567890ABCDEF') * 2
random.shuffle(digits)
num_digits = random.randrange(3, 13)
hex_number = ''.join(['0'] * (12-num_digits)) + ''.join(digits[:num_digits])
print(hex_number)
You could use a generator iterating a window over the strings your current implementation yields. Sth. like (hex_str[i:i + 3] for i in range(len(hex_str) - window_size + 1)) Using len and set you could count the number of different characters in the slice. Although in your example it might be easier to just compare all 3 characters.
You can create an array from 0 to 255, and use random.sample with your list to get your list

Finding repeated character combinations in string

I have a string that holds a very long sentence without whitespaces/spaces.
mystring = "abcdthisisatextwithsampletextforasampleabcd"
I would like to find all of the repeated substrings that contains minimum 4 chars.
So I would like to achieve something like this:
'text' 2 times
'sample' 2 times
'abcd' 2 times
As both abcd,text and sample can be found two times in the mystring they were recognized as properly matched substrings with more than 4 char length. It's important that I am seeking repeated substrings, finding only existing English words is not a requirement.
The answers I found are helpful for finding duplicates in texts with whitespaces, but I couldn't find a proper resource that covers the situation when there are no spaces and whitespaces in the string. How can this be done in the most efficient way?
Let's go through this step by step. There are several sub-tasks you should take care of:
Identify all substrings of length 4 or more.
Count the occurrence of these substrings.
Filter all substrings with 2 occurrences or more.
You can actually put all of them into a few statements. For understanding, it is easier to go through them one at a time.
The following examples all use
mystring = "abcdthisisatextwithsampletextforasampleabcd"
min_length = 4
1. Substrings of a given length
You can easily get substrings by slicing - for example, mystring[4:4+6] gives you the substring from position 4 of length 6: 'thisis'. More generically, you want substrings of the form mystring[start:start+length].
So what values do you need for start and length?
start must...
cover all substrings, so it must include the first character: start in range(0, ...).
not map to short substrings, so it can stop min_length characters before the end: start in range(..., len(mystring) - min_length + 1).
length must...
cover the shortest substring of length 4: length in range(min_length, ...).
not exceed the remaining string after i: length in range(..., len(mystring) - i + 1))
The +1 terms come from converting lengths (>=1) to indices (>=0).
You can put this all together into a single comprehension:
substrings = [
mystring[i:i+j]
for i in range(0, len(mystring) - min_length + 1)
for j in range(min_length, len(mystring) - i + 1)
]
2. Count substrings
Trivially, you want to keep a count for each substring. Keeping anything for each specific object is what dicts are made for. So you should use substrings as keys and counts as values in a dict. In essence, this corresponds to this:
counts = {}
for substring in substrings:
try: # increase count for existing keys, set for new keys
counts[substring] += 1
except KeyError:
counts[substring] = 1
You can simply feed your substrings to collections.Counter, and it produces something like the above.
>>> counts = collections.Counter(substrings)
>>> print(counts)
Counter({'abcd': 2, 'abcdt': 1, 'abcdth': 1, 'abcdthi': 1, 'abcdthis': 1, ...})
Notice how the duplicate 'abcd' maps to the count of 2.
3. Filtering duplicate substrings
So now you have your substrings and the count for each. You need to remove the non-duplicate substrings - those with a count of 1.
Python offers several constructs for filtering, depending on the output you want. These work also if counts is a regular dict:
>>> list(filter(lambda key: counts[key] > 1, counts))
['abcd', 'text', 'samp', 'sampl', 'sample', 'ampl', 'ample', 'mple']
>>> {key: value for key, value in counts.items() if value > 1}
{'abcd': 2, 'ampl': 2, 'ample': 2, 'mple': 2, 'samp': 2, 'sampl': 2, 'sample': 2, 'text': 2}
Using Python primitives
Python ships with primitives that allow you to do this more efficiently.
Use a generator to build substrings. A generator builds its member on the fly, so you never actually have them all in-memory. For your use case, you can use a generator expression:
substrings = (
mystring[i:i+j]
for i in range(0, len(mystring) - min_length + 1)
for j in range(min_length, len(mystring) - i + 1)
)
Use a pre-existing Counter implementation. Python comes with a dict-like container that counts its members: collections.Counter can directly digest your substring generator. Especially in newer version, this is much more efficient.
counts = collections.Counter(substrings)
You can exploit Python's lazy filters to only ever inspect one substring. The filter builtin or another generator generator expression can produce one result at a time without storing them all in memory.
for substring in filter(lambda key: counts[key] > 1, counts):
print(substring, 'occurs', counts[substring], 'times')
Nobody is using re! Time for an answer [ab]using the regular expression built-in module ;)
import re
Finding all the maximal substrings that are repeated
repeated_ones = set(re.findall(r"(.{4,})(?=.*\1)", mystring))
This matches the longest substrings which have at least a single repetition after (without consuming). So it finds all disjointed substrings that are repeated while only yielding the longest strings.
Finding all substrings that are repeated, including overlaps
mystring_overlap = "abcdeabcdzzzzbcde"
# In case we want to match both abcd and bcde
repeated_ones = set()
pos = 0
while True:
match = re.search(r"(.{4,}).*(\1)+", mystring_overlap[pos:])
if match:
repeated_ones.add(match.group(1))
pos += match.pos + 1
else:
break
This ensures that all --not only disjoint-- substrings which have repetition are returned. It should be much slower, but gets the work done.
If you want in addition to the longest strings that are repeated, all the substrings, then:
base_repetitions = list(repeated_ones)
for s in base_repetitions:
for i in range(4, len(s)):
repeated_ones.add(s[:i])
That will ensure that for long substrings that have repetition, you have also the smaller substring --e.g. "sample" and "ample" found by the re.search code; but also "samp", "sampl", "ampl" added by the above snippet.
Counting matches
Because (by design) the substrings that we count are non-overlapping, the count method is the way to go:
from __future__ import print_function
for substr in repeated_ones:
print("'%s': %d times" % (substr, mystring.count(substr)))
Results
Finding maximal substrings:
With the question's original mystring:
{'abcd', 'text', 'sample'}
with the mystring_overlap sample:
{'abcd'}
Finding all substrings:
With the question's original mystring:
{'abcd', 'ample', 'mple', 'sample', 'text'}
... and if we add the code to get all substrings then, of course, we get absolutely all the substrings:
{'abcd', 'ampl', 'ample', 'mple', 'samp', 'sampl', 'sample', 'text'}
with the mystring_overlap sample:
{'abcd', 'bcde'}
Future work
It's possible to filter the results of the finding all substrings with the following steps:
take a match "A"
check if this match is a substring of another match, call it "B"
if there is a "B" match, check the counter on that match "B_n"
if "A_n = B_n", then remove A
go to first step
It cannot happen that "A_n < B_n" because A is smaller than B (is a substring) so there must be at least the same number of repetitions.
If "A_n > B_n" it means that there is some extra match of the smaller substring, so it is a distinct substring because it is repeated in a place where B is not repeated.
Script (explanation where needed, in comments):
from collections import Counter
mystring = "abcdthisisatextwithsampletextforasampleabcd"
mystring_len = len(mystring)
possible_matches = []
matches = []
# Range `start_index` from 0 to 3 from the left, due to minimum char count of 4
for start_index in range(0, mystring_len-3):
# Start `end_index` at `start_index+1` and range it throughout the rest of
# the string
for end_index in range(start_index+1, mystring_len+1):
current_string = mystring[start_index:end_index]
if len(current_string) < 4: continue # Skip this interation, if len < 4
possible_matches.append(mystring[start_index:end_index])
for possible_match, count in Counter(possible_matches).most_common():
# Iterate until count is less than or equal to 1 because `Counter`'s
# `most_common` method lists them in order. Once 1 (or less) is hit, all
# others are the same or lower.
if count <= 1: break
matches.append((possible_match, count))
for match, count in matches:
print(f'\'{match}\' {count} times')
Output:
'abcd' 2 times
'text' 2 times
'samp' 2 times
'sampl' 2 times
'sample' 2 times
'ampl' 2 times
'ample' 2 times
'mple' 2 times
Here's a Python3 friendly solution:
from collections import Counter
min_str_length = 4
mystring = "abcdthisisatextwithsampletextforasampleabcd"
all_substrings =[mystring[start_index:][:end_index + 1] for start_index in range(len(mystring)) for end_index in range(len(mystring[start_index:]))]
counted_substrings = Counter(all_substrings)
not_counted_final_candidates = [item[0] for item in counted_substrings.most_common() if item[1] > 1 and len(item[0]) >= min_str_length]
counted_final_candidates = {item: counted_substrings[item] for item in not_counted_final_candidates}
print(counted_final_candidates)
Bonus: largest string
sub_sub_strings = [substring1 for substring1 in not_counted_final_candidates for substring2 in not_counted_final_candidates if substring1!=substring2 and substring1 in substring2 ]
largest_common_string = list(set(not_counted_final_candidates) - set(sub_sub_strings))
Everything as a function:
from collections import Counter
def get_repeated_strings(input_string, min_str_length = 2, calculate_largest_repeated_string = True ):
all_substrings = [input_string[start_index:][:end_index + 1]
for start_index in range(len(input_string))
for end_index in range(len(input_string[start_index:]))]
counted_substrings = Counter(all_substrings)
not_counted_final_candidates = [item[0]
for item in counted_substrings.most_common()
if item[1] > 1 and len(item[0]) >= min_str_length]
counted_final_candidates = {item: counted_substrings[item] for item in not_counted_final_candidates}
### This is just a bit of bonus code for calculating the largest repeating sting
if calculate_largest_repeated_string == True:
sub_sub_strings = [substring1 for substring1 in not_counted_final_candidates for substring2 in
not_counted_final_candidates if substring1 != substring2 and substring1 in substring2]
largest_common_strings = list(set(not_counted_final_candidates) - set(sub_sub_strings))
return counted_final_candidates, largest_common_strings
else:
return counted_final_candidates
Example:
mystring = "abcdthisisatextwithsampletextforasampleabcd"
print(get_repeated_strings(mystring, min_str_length= 4))
Output:
({'abcd': 2, 'text': 2, 'samp': 2, 'sampl': 2, 'sample': 2, 'ampl': 2, 'ample': 2, 'mple': 2}, ['abcd', 'text', 'sample'])
CODE:
pattern = "abcdthisisatextwithsampletextforasampleabcd"
string_more_4 = []
k = 4
while(k <= len(pattern)):
for i in range(len(pattern)):
if pattern[i:k+i] not in string_more_4 and len(pattern[i:k+i]) >= 4:
string_more_4.append( pattern[i:k+i])
k+=1
for i in string_more_4:
if pattern.count(i) >= 2:
print(i + " -> " + str(pattern.count(i)) + " times")
OUTPUT:
abcd -> 2 times
text -> 2 times
samp -> 2 times
ampl -> 2 times
mple -> 2 times
sampl -> 2 times
ample -> 2 times
sample -> 2 times
Hope this helps as my code length was short and it is easy to understand. Cheers!
This is in Python 2 because I'm not doing Python 3 at this time. So you'll have to adapt it to Python 3 yourself.
#!python2
# import module
from collections import Counter
# get the indices
def getIndices(length):
# holds the indices
specific_range = []; all_sets = []
# start building the indices
for i in range(0, length - 2):
# build a set of indices of a specific range
for j in range(1, length + 2):
specific_range.append([j - 1, j + i + 3])
# append 'specific_range' to 'all_sets', reset 'specific_range'
if specific_range[j - 1][1] == length:
all_sets.append(specific_range)
specific_range = []
break
# return all of the calculated indices ranges
return all_sets
# store search strings
tmplst = []; combos = []; found = []
# string to be searched
mystring = "abcdthisisatextwithsampletextforasampleabcd"
# mystring = "abcdthisisatextwithtextsampletextforasampleabcdtext"
# get length of string
length = len(mystring)
# get all of the indices ranges, 4 and greater
all_sets = getIndices(length)
# get the search string combinations
for sublst in all_sets:
for subsublst in sublst:
tmplst.append(mystring[subsublst[0]: subsublst[1]])
combos.append(tmplst)
tmplst = []
# search for matching string patterns
for sublst in all_sets:
for subsublst in sublst:
for sublstitems in combos:
if mystring[subsublst[0]: subsublst[1]] in sublstitems:
found.append(mystring[subsublst[0]: subsublst[1]])
# make a dictionary containing the strings and their counts
d1 = Counter(found)
# filter out counts of 2 or more and print them
for k, v in d1.items():
if v > 1:
print k, v
$ cat test.py
import collections
import sys
S = "abcdthisisatextwithsampletextforasampleabcd"
def find(s, min_length=4):
"""
Find repeated character sequences in a provided string.
Arguments:
s -- the string to be searched
min_length -- the minimum length of the sequences to be found
"""
counter = collections.defaultdict(int)
# A repeated sequence can't be longer than half the length of s
sequence_length = len(s) // 2
# populate counter with all possible sequences
while sequence_length >= min_length:
# Iterate over the string until the number of remaining characters is
# fewer than the length of the current sequence.
for i, x in enumerate(s[:-(sequence_length - 1)]):
# Window across the string, getting slices
# of length == sequence_length.
candidate = s[i:i + sequence_length]
counter[candidate] += 1
sequence_length -= 1
# Report.
for k, v in counter.items():
if v > 1:
print('{} {} times'.format(k, v))
return
if __name__ == '__main__':
try:
s = sys.argv[1]
except IndexError:
s = S
find(s)
$ python test.py
sample 2 times
sampl 2 times
ample 2 times
abcd 2 times
text 2 times
samp 2 times
ampl 2 times
mple 2 times
This is my approach to this problem:
def get_repeated_words(string, minimum_len):
# Storing count of repeated words in this dictionary
repeated_words = {}
# Traversing till last but 4th element
# Actually leaving `minimum_len` elements at end (in this case its 4)
for i in range(len(string)-minimum_len):
# Starting with a length of 4(`minimum_len`) and going till end of string
for j in range(i+minimum_len, len(string)):
# getting the current word
word = string[i:j]
# counting the occurrences of the word
word_count = string.count(word)
if word_count > 1:
# storing in dictionary along with its count if found more than once
repeated_words[word] = word_count
return repeated_words
if __name__ == '__main__':
mystring = "abcdthisisatextwithsampletextforasampleabcd"
result = get_repeated_words(mystring, 4)
This is how I would do it, but I don't know any other way:
string = "abcdthisisatextwithsampletextforasampleabcd"
l = len(string)
occurences = {}
for i in range(4, l):
for start in range(l - i):
substring = string[start:start + i]
occurences[substring] = occurences.get(substring, 0) + 1
for key in occurences.keys():
if occurences[key] > 1:
print("'" + key + "'", str(occurences[key]), "times")
Output:
'sample' 2 times
'ampl' 2 times
'sampl' 2 times
'ample' 2 times
'samp' 2 times
'mple' 2 times
'text' 2 times
Efficient, no, but easy to understand, yes.
Here is simple solution using the more_itertools library.
Given
import collections as ct
import more_itertools as mit
s = "abcdthisisatextwithsampletextforasampleabcd"
lbound, ubound = len("abcd"), len(s)
Code
windows = mit.flatten(mit.windowed(s, n=i) for i in range(lbound, ubound))
filtered = {"".join(k): v for k, v in ct.Counter(windows).items() if v > 1}
filtered
Output
{'abcd': 2,
'text': 2,
'samp': 2,
'ampl': 2,
'mple': 2,
'sampl': 2,
'ample': 2,
'sample': 2}
Details
The procedures are:
build sliding windows of varying sizes lbound <= n < ubound
count all occurrences and filter replicates
more_itertools is a third-party package installed by > pip install more_itertools.
s = 'abcabcabcdabcd'
d = {}
def get_repeats(s, l):
for i in range(len(s)-l):
ss = s[i: i+l]
if ss not in d:
d[ss] = 1
else:
d[ss] = d[ss]+1
return d
get_repeats(s, 3)

extract substring pattern

I have long file like 1200 sequences
>3fm8|A|A0JLQ2
CFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQLCGMGILPEHCIIDITSEGQVMLTP
QKNTRTFVNGSSVSSPIQLHHGDRILWGNNHFFRLNLP
>2ht9|A|A0JLT0
LATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDA
LYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYL
I want to read each possible pattern has cysteine in middle and has in the beginning five string and follow by other five string such as xxxxxCxxxxx
the output should be like this:
QDIQLCGMGIL
ILPEHCIIDIT
TISDNCVVIFS
FSKTSCSYCTM
this is the pogram only give position of C . it is not work like what I want
pos=[]
def find(ch,string1):
for i in range(len(string1)):
if ch == string1[i]:
pos.append(i)
return pos
z=find('C','AWERQRTCWERTYCTAAAACTTCTTT')
print z
You need to return outside the loop, you are returning on the first match so you only ever get a single character in your list:
def find(ch,string1):
pos = []
for i in range(len(string1)):
if ch == string1[i]:
pos.append(i)
return pos # outside
You can also use enumerate with a list comp in place of your range logic:
def indexes(ch, s1):
return [index for index, char in enumerate(s1)if char == ch and 5 >= index <= len(s1) - 6]
Each index in the list comp is the character index and each char is the actual character so we keep each index where char is equal to ch.
If you want the five chars that are both sides:
In [24]: s="CFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQLCGMGILPEHCIIDITSEGQVMLTP QKNTRTFVNGSSVSSPIQLHHGDRILWGNNHFFRLNLP"
In [25]: inds = indexes("C",s)
In [26]: [s[i-5:i+6] for i in inds]
Out[26]: ['QDIQLCGMGIL', 'ILPEHCIIDIT']
I added checking the index as we obviously cannot get five chars before C if the index is < 5 and the same from the end.
You can do it all in a single function, yielding a slice when you find a match:
def find(ch, s):
ln = len(s)
for i, char in enumerate(s):
if ch == char and 5 <= i <= ln - 6:
yield s[i- 5:i + 6]
Where presuming the data in your question is actually two lines from yoru file like:
s="""">3fm8|A|A0JLQ2CFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQLCGMGILPEHCIIDITSEGQVMLTPQKNTRTFVNGSSVSSPIQLHHGDRILWGNNHFFRLNLP
>2ht9|A|A0JLT0LATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCY"""
Running:
for line in s.splitlines():
print(list(find("C" ,line)))
would output:
['0JLQ2CFLVNL', 'QDIQLCGMGIL', 'ILPEHCIIDIT']
['TISDNCVVIFS', 'FSKTSCSYCTM', 'TSCSYCTMAKK']
Which gives six matches not four as your expected output suggest so I presume you did not include all possible matches.
You can also speed up the code using str.find, starting at the last match index + 1 for each subsequent match
def find(ch, s):
ln, i = len(s) - 6, s.find(ch)
while 5 <= i <= ln:
yield s[i - 5:i + 6]
i = s.find(ch, i + 1)
Which will give the same output. Of course if the strings cannot overlap you can start looking for the next match much further in the string each time.
My solution is based on regex, and shows all possible solutions using regex and while loop. Thanks to #Smac89 for improving it by transforming it into a generator:
import re
string = """CFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQLCGMGILPEHCIIDITSEGQVMLTPQKNTRTFVNGSSVSSPIQLHHGDRILWGNNHFFRLNLP
LATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDA LYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYL"""
# Generator
def find_cysteine2(string):
# Create a loop that will utilize regex multiple times
# in order to capture matches within groups
while True:
# Find a match
data = re.search(r'(\w{5}C\w{5})',string)
# If match exists, let's collect the data
if data:
# Collect the string
yield data.group(1)
# Shrink the string to not include
# the previous result
location = data.start() + 1
string = string[location:]
# If there are no matches, stop the loop
else:
break
print [x for x in find_cysteine2(string)]
# ['QDIQLCGMGIL', 'ILPEHCIIDIT', 'TISDNCVVIFS', 'FSKTSCSYCTM', 'TSCSYCTMAKK']

formatting list to convert into string

Here is my question
count += 1
num = 0
num = num + 1
obs = obs_%d%(count)
mag = mag_%d%(count)
while num < 4:
obsforsim = obs + mag
mylist.append(obsforsim)
for index in mylist:
print index
The above code gives the following results
obs1 = mag1
obs2 = mag2
obs3 = mag3
and so on.
obsforrbd = parentV = {0},format(index)
cmds.dynExpression(nPartilce1,s = obsforrbd,c = 1)
However when i run the code above it only gives me
parentV = obs3 = mag3
not the whole list,it only gives me the last element of the list why is that..??
Thanks.
I'm having difficulty interpreting your question, so I'm just going to base this on the question title.
Let's say you have a list of items (they could be anything, numbers, strings, characters, etc)
myList = [1,2,3,4,"abcd"]
If you do something like:
for i in myList:
print(i)
you will get:
1
2
3
4
"abcd"
If you want to convert this to a string:
myString = ' '.join(myList)
should have:
print(myString)
>"1 2 3 4 abcd"
Now for some explanation:
' ' is a string in python, and strings have certain methods associated with them (functions that can be applied to strings). In this instance, we're calling the .join() method. This method takes a list as an argument, and extracts each element of the list, converts it to a string representation and 'joins' it based on ' ' as a separator. If you wanted a comma separated list representation, just replace ' ' with ','.
I think your indentations wrong ... it should be
while num < 4:
obsforsim = obs + mag
mylist.append(obsforsim)
for index in mylist:
but Im not sure if thats your problem or not
the reason it did not work before is
while num < 4:
obsforsim = obs + mag
#does all loops before here
mylist.append(obsforsim) #appends only last
The usual pythonic way to spit out a list of numbered items would be either the range function:
results = []
for item in range(1, 4):
results.append("obs%i = mag_%i" % (item, item))
> ['obs1 = mag_1', 'obs2 = mag_2', 'ob3= mag_3']
and so on (note in this example you have to pass in the item variable twice to get it to register twice.
If that's to be formatted into something like an expression you could use
'\n'.join(results)
as in the other example to create a single string with the obs = mag pairs on their own lines.
Finally, you can do all that in one line with a list comprehension.
'\n'.join([ "obs%i = mag_%i" % (item, item) for item in range (1, 4)])
As other people have pointed out, while loops are dangerous - its easier to use range

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