ModuleNotFoundError: No module named in another submodule - python

I have read a couple of threads on StackOverflow but did not find any answer that has fixed my problem. I'm pretty new to Python and cannot figure out how does modeling system works. I do understand the difference between module and package, but that does not help me with my problem. Here goes:
Here's my project structure:
venv/
root/
commons/
config.py
main/
main.py
Here's my config.py:
class Config:
...
Here's my main.py
from commons.config import Config
...
when running (venv) python3 root/main/main.py I get ModuleNotFoundError: No module named 'config'. What am I doing wrong? It is a problem with my app? with my main.py? With the way I execute my main.py?
Execution is done using Python 3.9 on MacOS

The path to config.py is not added to the list of paths where the interpreter looks for modules and hence does find the config module.
A simple workaround is to change in main.py:
from commons.config import Config
to
from root.commons.config import Config
and execute main.py as a module in the project directory with
python -m root.main.main
When the file is executed as a module it will add the path from where it is executed to the paths the interpreter looks for modules and root.commons.config is a absolute reference from then on.

As #Iliya mentioned, the interpreter doesn't find the way to 'config' module.
You can modify your main.py to fix the issue:
import sys
sys.path.append("absolute_path_to_root")
from commons.config import Config
...
or
import os
import sys
# set the parent dir into python's search path
current = os.path.dirname(os.path.realpath(__file__))
parent = os.path.dirname(current)
sys.path.append(parent)
from commons.config import Config
...

After carefully browsing StackOverflow I finally managed to find a solution that works for me using setup.py.
Thank you #np8 for this answer

Related

Python, absolute/relative import not working as expected

I apologize for the millionth post about this topic.
I thought I had a good grip of the whole absolute/relative import mechanism - I even replied to a couple of questions about it myself - but I'm having a problem with it and I can't figure out how to solve it.
I'm using Python 3.8.0, this is my directory structure:
project_folder
scripts/
main.py
models/
__init__.py
subfolder00/
subfolder01/
some_script.py --> contains def for some_function
I need to import some_function from some_script.py when running main.py, so I tried:
1) relative import
# in main.py
from ..models.subfolder00.subfolder01.somescript import some_function
but when I run (from the scripts/ folder)
python main.py
this fails with error:
ImportError: attempted relative import with no known parent package
This was expected, because I'm running main.py directly as a script, so its _name_ is set to _main_ and relative imports are bound to fail.
However, I was expecting it to work when running (always from within the scripts folder):
python -m main
but I'm getting always the same error.
2) absolute import
I tried changing the import in main.py to:
# in main.py
from models.subfolder00.subfolder01.somescript import some_function
and running, this time from the main project folder:
python scripts/main.py
so that - I was assuming - the starting point for the absolute import would be the project folder itself, from which it could get to models/....
But now I'm getting the error:
ModuleNotFoundError: No module named 'models'
Why didn't it work when using the -m option in the case of relative import, and it's not working when using absolute ones either? Which is the correct way to do this?
I think quite likely you missed python's official doc ( that even come offline )
https://docs.python.org/3/tutorial/modules.html
you'll need a dummy __init__.py within your module, at same level of some_script.py
I think your "absolute" import may not have been absolute in the truest sense.
Prior to running the python scripts/main.py command, you would have needed to setup PYTHONPATH environment variable to include the path to project_folder.
Alternatively I do something like this in main.py:
import sys
import os
sys.path.append(os.path.join(os.path.dirname(os.path.abspath(__file__)),'..','models','subfolder00','subfolder01'))
from somescript import some_function
Maybe it is a little pedantic, but it makes sense to me.

Python can't import a module that I've created, but does it for the others [duplicate]

I am running Python 2.5.
This is my folder tree:
ptdraft/
nib.py
simulations/
life/
life.py
(I also have __init__.py in each folder, omitted here for readability)
How do I import the nib module from inside the life module? I am hoping it is possible to do without tinkering with sys.path.
Note: The main module being run is in the ptdraft folder.
You could use relative imports (python >= 2.5):
from ... import nib
(What’s New in Python 2.5) PEP 328: Absolute and Relative Imports
EDIT: added another dot '.' to go up two packages
I posted a similar answer also to the question regarding imports from sibling packages. You can see it here.
Solution without sys.path hacks
Summary
Wrap the code into one folder (e.g. packaged_stuff)
Create a setup.py script where you use setuptools.setup().
Pip install the package in editable state with pip install -e <myproject_folder>
Import using from packaged_stuff.modulename import function_name
Setup
I assume the same folder structure as in the question
.
└── ptdraft
├── __init__.py
├── nib.py
└── simulations
├── __init__.py
└── life
├── __init__.py
└── life.py
I call the . the root folder, and in my case it is located in C:\tmp\test_imports.
Steps
Add a setup.py to the root folder
--
The contents of the setup.py can be simply
from setuptools import setup, find_packages
setup(name='myproject', version='1.0', packages=find_packages())
Basically "any" setup.py would work. This is just a minimal working example.
Use a virtual environment
If you are familiar with virtual environments, activate one, and skip to the next step. Usage of virtual environments are not absolutely required, but they will really help you out in the long run (when you have more than 1 project ongoing..). The most basic steps are (run in the root folder)
Create virtual env
python -m venv venv
Activate virtual env
. venv/bin/activate (Linux) or ./venv/Scripts/activate (Win)
Deactivate virtual env
deactivate (Linux)
To learn more about this, just Google out "python virtualenv tutorial" or similar. You probably never need any other commands than creating, activating and deactivating.
Once you have made and activated a virtual environment, your console should give the name of the virtual environment in parenthesis
PS C:\tmp\test_imports> python -m venv venv
PS C:\tmp\test_imports> .\venv\Scripts\activate
(venv) PS C:\tmp\test_imports>
pip install your project in editable state
Install your top level package myproject using pip. The trick is to use the -e flag when doing the install. This way it is installed in an editable state, and all the edits made to the .py files will be automatically included in the installed package.
In the root directory, run
pip install -e . (note the dot, it stands for "current directory")
You can also see that it is installed by using pip freeze
(venv) PS C:\tmp\test_imports> pip install -e .
Obtaining file:///C:/tmp/test_imports
Installing collected packages: myproject
Running setup.py develop for myproject
Successfully installed myproject
(venv) PS C:\tmp\test_imports> pip freeze
myproject==1.0
Import by prepending mainfolder to every import
In this example, the mainfolder would be ptdraft. This has the advantage that you will not run into name collisions with other module names (from python standard library or 3rd party modules).
Example Usage
nib.py
def function_from_nib():
print('I am the return value from function_from_nib!')
life.py
from ptdraft.nib import function_from_nib
if __name__ == '__main__':
function_from_nib()
Running life.py
(venv) PS C:\tmp\test_imports> python .\ptdraft\simulations\life\life.py
I am the return value from function_from_nib!
Relative imports (as in from .. import mymodule) only work in a package.
To import 'mymodule' that is in the parent directory of your current module:
import os
import sys
import inspect
currentdir = os.path.dirname(os.path.abspath(inspect.getfile(inspect.currentframe())))
parentdir = os.path.dirname(currentdir)
sys.path.insert(0, parentdir)
import mymodule
edit: the __file__ attribute is not always given. Instead of using os.path.abspath(__file__) I now suggested using the inspect module to retrieve the filename (and path) of the current file
It seems that the problem is not related to the module being in a parent directory or anything like that.
You need to add the directory that contains ptdraft to PYTHONPATH
You said that import nib worked with you, that probably means that you added ptdraft itself (not its parent) to PYTHONPATH.
You can use OS depending path in "module search path" which is listed in sys.path .
So you can easily add parent directory like following
import sys
sys.path.insert(0,'..')
If you want to add parent-parent directory,
sys.path.insert(0,'../..')
This works both in python 2 and 3.
Don't know much about python 2.
In python 3, the parent folder can be added as follows:
import sys
sys.path.append('..')
...and then one is able to import modules from it
If adding your module folder to the PYTHONPATH didn't work, You can modify the sys.path list in your program where the Python interpreter searches for the modules to import, the python documentation says:
When a module named spam is imported, the interpreter first searches for a built-in module with that name. If not found, it then searches for a file named spam.py in a list of directories given by the variable sys.path. sys.path is initialized from these locations:
the directory containing the input script (or the current directory).
PYTHONPATH (a list of directory names, with the same syntax as the shell variable PATH).
the installation-dependent default.
After initialization, Python programs can modify sys.path. The directory containing the script being run is placed at the beginning of the search path, ahead of the standard library path. This means that scripts in that directory will be loaded instead of modules of the same name in the library directory. This is an error unless the replacement is intended.
Knowing this, you can do the following in your program:
import sys
# Add the ptdraft folder path to the sys.path list
sys.path.append('/path/to/ptdraft/')
# Now you can import your module
from ptdraft import nib
# Or just
import ptdraft
Here is an answer that's simple so you can see how it works, small and cross-platform.
It only uses built-in modules (os, sys and inspect) so should work
on any operating system (OS) because Python is designed for that.
Shorter code for answer - fewer lines and variables
from inspect import getsourcefile
import os.path as path, sys
current_dir = path.dirname(path.abspath(getsourcefile(lambda:0)))
sys.path.insert(0, current_dir[:current_dir.rfind(path.sep)])
import my_module # Replace "my_module" here with the module name.
sys.path.pop(0)
For less lines than this, replace the second line with import os.path as path, sys, inspect,
add inspect. at the start of getsourcefile (line 3) and remove the first line.
- however this imports all of the module so could need more time, memory and resources.
The code for my answer (longer version)
from inspect import getsourcefile
import os.path
import sys
current_path = os.path.abspath(getsourcefile(lambda:0))
current_dir = os.path.dirname(current_path)
parent_dir = current_dir[:current_dir.rfind(os.path.sep)]
sys.path.insert(0, parent_dir)
import my_module # Replace "my_module" here with the module name.
It uses an example from a Stack Overflow answer How do I get the path of the current
executed file in Python? to find the source (filename) of running code with a built-in tool.
from inspect import getsourcefile
from os.path import abspath
Next, wherever you want to find the source file from you just use:
abspath(getsourcefile(lambda:0))
My code adds a file path to sys.path, the python path list
because this allows Python to import modules from that folder.
After importing a module in the code, it's a good idea to run sys.path.pop(0) on a new line
when that added folder has a module with the same name as another module that is imported
later in the program. You need to remove the list item added before the import, not other paths.
If your program doesn't import other modules, it's safe to not delete the file path because
after a program ends (or restarting the Python shell), any edits made to sys.path disappear.
Notes about a filename variable
My answer doesn't use the __file__ variable to get the file path/filename of running
code because users here have often described it as unreliable. You shouldn't use it
for importing modules from parent folder in programs used by other people.
Some examples where it doesn't work (quote from this Stack Overflow question):
• it can't be found on some platforms • it sometimes isn't the full file path
py2exe doesn't have a __file__ attribute, but there is a workaround
When you run from IDLE with execute() there is no __file__ attribute
OS X 10.6 where I get NameError: global name '__file__' is not defined
Here is more generic solution that includes the parent directory into sys.path (works for me):
import os.path, sys
sys.path.append(os.path.join(os.path.dirname(os.path.realpath(__file__)), os.pardir))
The pathlib library (included with >= Python 3.4) makes it very concise and intuitive to append the path of the parent directory to the PYTHONPATH:
import sys
from pathlib import Path
sys.path.append(str(Path('.').absolute().parent))
In a Jupyter Notebook (opened with Jupyter LAB or Jupyter Notebook)
As long as you're working in a Jupyter Notebook, this short solution might be useful:
%cd ..
import nib
It works even without an __init__.py file.
I tested it with Anaconda3 on Linux and Windows 7.
I found the following way works for importing a package from the script's parent directory. In the example, I would like to import functions in env.py from app.db package.
.
└── my_application
└── alembic
└── env.py
└── app
├── __init__.py
└── db
import os
import sys
currentdir = os.path.dirname(os.path.realpath(__file__))
parentdir = os.path.dirname(currentdir)
sys.path.append(parentdir)
Above mentioned solutions are also fine. Another solution to this problem is
If you want to import anything from top level directory. Then,
from ...module_name import *
Also, if you want to import any module from the parent directory. Then,
from ..module_name import *
Also, if you want to import any module from the parent directory. Then,
from ...module_name.another_module import *
This way you can import any particular method if you want to.
Two line simplest solution
import os, sys
sys.path.insert(0, os.getcwd())
If parent is your working directory and you want to call another child modules from child scripts.
You can import all child modules from parent directory in any scripts and execute it as
python child_module1/child_script.py
For me the shortest and my favorite oneliner for accessing to the parent directory is:
sys.path.append(os.path.dirname(os.getcwd()))
or:
sys.path.insert(1, os.path.dirname(os.getcwd()))
os.getcwd() returns the name of the current working directory, os.path.dirname(directory_name) returns the directory name for the passed one.
Actually, in my opinion Python project architecture should be done the way where no one module from child directory will use any module from the parent directory. If something like this happens it is worth to rethink about the project tree.
Another way is to add parent directory to PYTHONPATH system environment variable.
Though the original author is probably no longer looking for a solution, but for completeness, there one simple solution. It's to run life.py as a module like this:
cd ptdraft
python -m simulations.life.life
This way you can import anything from nib.py as ptdraft directory is in the path.
I think you can try this in that specific example, but in python 3.6.3
import sys
sys.path.append('../')
same sort of style as the past answer - but in fewer lines :P
import os,sys
parentdir = os.path.dirname(__file__)
sys.path.insert(0,parentdir)
file returns the location you are working in
In a Linux system, you can create a soft link from the "life" folder to the nib.py file. Then, you can simply import it like:
import nib
I have a solution specifically for git-repositories.
First I used sys.path.append('..') and similar solutions. This causes especially problems if you are importing files which are themselves importing files with sys.path.append('..').
I then decided to always append the root directory of the git repository. In one line it would look like this:
sys.path.append(git.Repo('.', search_parent_directories=True).working_tree_dir)
Or in more details like this:
import os
import sys
import git
def get_main_git_root(path):
main_repo_root_dir = git.Repo(path, search_parent_directories=True).working_tree_dir
return main_repo_root_dir
main_repo_root_dir = get_main_git_root('.')
sys.path.append(main_repo_root_dir)
For the original question: Based on what the root directory of the repository is, the import would be
import ptdraft.nib
or
import nib
Our folder structure:
/myproject
project_using_ptdraft/
main.py
ptdraft/
__init__.py
nib.py
simulations/
__init__.py
life/
__init__.py
life.py
The way I understand this is to have a package-centric view.
The package root is ptdraft, since it's the top most level that contains __init__.py
All the files within the package can use absolute paths (that are relative to package root) for imports, for example
in life.py, we have simply:
import ptdraft.nib
However, to run life.py for package dev/testing purposes, instead of python life.py, we need to use:
cd /myproject
python -m ptdraft.simulations.life.life
Note that we didn't need to fiddle with any path at all at this point.
Further confusion is when we complete the ptdraft package, and we want to use it in a driver script, which is necessarily outside of the ptdraft package folder, aka project_using_ptdraft/main.py, we would need to fiddle with paths:
import sys
sys.path.append("/myproject") # folder that contains ptdraft
import ptdraft
import ptdraft.simulations
and use python main.py to run the script without problem.
Helpful links:
https://tenthousandmeters.com/blog/python-behind-the-scenes-11-how-the-python-import-system-works/ (see how __init__.py can be used)
https://chrisyeh96.github.io/2017/08/08/definitive-guide-python-imports.html#running-package-initialization-code
https://stackoverflow.com/a/50392363/2202107
https://stackoverflow.com/a/27876800/2202107
Work with libraries.
Make a library called nib, install it using setup.py, let it reside in site-packages and your problems are solved.
You don't have to stuff everything you make in a single package. Break it up to pieces.
I had a problem where I had to import a Flask application, that had an import that also needed to import files in separate folders. This is partially using Remi's answer, but suppose we had a repository that looks like this:
.
└── service
└── misc
└── categories.csv
└── test
└── app_test.py
app.py
pipeline.py
Then before importing the app object from the app.py file, we change the directory one level up, so when we import the app (which imports the pipeline.py), we can also read in miscellaneous files like a csv file.
import os,sys,inspect
currentdir = os.path.dirname(os.path.abspath(inspect.getfile(inspect.currentframe())))
parentdir = os.path.dirname(currentdir)
sys.path.insert(0,parentdir)
os.chdir('../')
from app import app
After having imported the Flask app, you can use os.chdir('./test') so that your working directory is not changed.
It's seems to me that you don't really need to import the parent module. Let's imagine that in nib.py you have func1() and data1, you need to use in life.py
nib.py
import simulations.life.life as life
def func1():
pass
data1 = {}
life.share(func1, data1)
life.py
func1 = data1 = None
def share(*args):
global func1, data1
func1, data1 = args
And now you have the access to func1 and data in life.py. Of course you have to be careful to populate them in life.py before you try to use them,
I made this library to do this.
https://github.com/fx-kirin/add_parent_path
# Just add parent path
add_parent_path(1)
# Append to syspath and delete when the exist of with statement.
with add_parent_path(1):
# Import modules in the parent path
pass
This is the simplest solution that works for me:
from ptdraft import nib
After removing some sys path hacks, I thought it might be valuable to add
My preferred solution.
Note: this is a frame challenge - it's not necessary to do in-code.
Assuming a tree,
project
└── pkg
└── test.py
Where test.py contains
import sys, json; print(json.dumps(sys.path, indent=2))
Executing using the path only includes the package directory
python pkg/test.py
[
"/project/pkg",
...
]
But using the module argument includes the project directory
python -m pkg.test
[
"/project",
...
]
Now, all imports can be absolute, from the project directory. No further skullduggery required.
Although it is against all rules, I still want to mention this possibility:
You can first copy the file from the parent directory to the child directory. Next import it and subsequently remove the copied file:
for example in life.py:
import os
import shutil
shutil.copy('../nib.py', '.')
import nib
os.remove('nib.py')
# now you can use it just fine:
nib.foo()
Of course there might arise several problems when nibs tries to import/read other files with relative imports/paths.
This works for me to import things from a higher folder.
import os
os.chdir('..')

Relative imports in python with local ang global libraries

My apps are organized like this:
apps/
code/
libglobal/
funglobal.py
tests/
project/
liblocal/
funlocal.py
main.py
In main.py I have:
import liblocal.funlocal
In funlocal.py I try to import funglobal.py with:
from ....code.libglobal import funglobal
When I run
python3 -B tests/project/main.py
I get an error:
from ....code.libglobal import funglobal
ValueError: attempted relative import beyond top-level package
I have read a lot of information about relative imports with python3 and still don't find how to solve this error without changing the apps organization radically. Any solution?
As the script being executed has its __name__ set as __main__ and defines itself to be on the top level of the package, it refuses to recognize scripts in sibling directories.
You can fix this with a sys.path hack:
import sys, os
sys.path.insert(0, os.path.abspath('../..'))
or an interseting alternative with setuptools is presented in this answer.
Have you a __init__.py script in each folder ?
If no, you should create an empty script named __init__.py in each folder.

ImportError: No module named - Python

I have a python application with the following directory structure:
src
|
+---- main
|
+---- util
|
+---- gen_py
|
+---- lib
In the package main, I have a python module named MyServer.py which has an import statement like:
from gen_py.lib import MyService
In order for this statement to work, I placed the following line at the beginning of MyServer.py:
import sys
sys.path.append('../gen_py/lib')
When I run MyServer.py in the terminal, I get the following error:
ImportError: No module named gen_py.lib
What I am missing here?
Your modification of sys.path assumes the current working directory is always in main/. This is not the case. Instead, just add the parent directory to sys.path:
import sys
import os.path
sys.path.append(os.path.join(os.path.dirname(__file__), '..'))
import gen_py.lib
Don't forget to include a file __init__.py in gen_py and lib - otherwise, they won't be recognized as Python modules.
For the Python module import to work, you must have "src" in your path, not "gen_py/lib".
When processing an import like import gen_py.lib, it looks for a module gen_py, then looks for a submodule lib.
As the module gen_py won't be in "../gen_py/lib" (it'll be in ".."), the path you added will do nothing to help the import process.
Depending on where you're running it from, try adding the relative path to the "src" folder. Perhaps it's sys.path.append('..'). You might also have success running the script while inside the src folder directly, via relative paths like python main/MyServer.py
from ..gen_py.lib import MyService
or
from main.gen_py.lib import MyService
Make sure you have a (at least empty) __init__.py file on each directory.
make sure to include __init__.py, which makes Python know that those directories containpackages
This is if you are building a package and you are finding error in imports. I learnt it the hard way.The answer isn't to add the package to python path or to do it programatically (what if your module gets installed and your command adds it again?) thats a bad way.
The right thing to do is:
1) Use virtualenv pyvenv-3.4 or something similar
2) Activate the development mode - $python setup.py develop
Make sure if root project directory is coming up in sys.path output.
If not, please add path of root project directory to sys.path.

something wrong with my pythonpath

I know this is a dumb question but i'm stumped. My directory structure used to look like this:
-src
|
-module.py
-program.py
when this what my directory structure, I referenced module from program and all was well.
I've since changed my directory structure to this:
-src
|
-__init.py
-module.py
|
-programDir
|
-__init.py
-program.py
now, of course, I can't reach the module from program. How can I reference src as a package. I tried to create an
__init__.py
file in the src directory, but no luck.
Moar deets:
import statements i've tried in program.py:
import module
and
from src import module
the first one worked when the other module and program were in the same directory.
error i'm getting:
ImportError: No module named module
and just for the record: No, my module and program are not called module OR program
update: I've tried this in my program.py file:
from ...src import module
and
from ..src import module
both are giving me:
ValueError: Attempted relative import in non-package
For starters, I recommend reading the entry Modifying Python's Search Path in the docs.
It might be frowned upon by some, but if you wish to modify the PYTHONPATH from within your program, according to the documentation's standard modules entry you can use the sys.path.append method:
import sys
sys.path.append('..')
import module
Couldn't you use PEP 328 to solve this?
If you run program.py directly, with python program.py or with #!, then module.py's directory should be in the PYTHONPATH for import module to work. This can be achieved using a helper shell script that's kept in programDir, for instance, and looks something like:
#!/bin/bash
script_dir=`dirname $0`
# Add the script's parent directory to the PYTHONPATH
export PYTHONPATH=$PYTHONPATH:$script_dir/..
python $script_dir/program.py
Another, probably better, way would be to have program.py export a "main()" function, and create a helper python script at src/program that looks like:
#!/usr/bin/env python
from programDir.program import main
main()
In this case, you can use relative imports in src/programDir/program.py, so this should work:
from .. import module
The first one worked because Python's sys.path's first entry is '' which means it will look for module names in the current working directory from which you've executed the Python interpreter.
The issue you seem to have is that the directory located at src is not set on your PYTHONPATH. So, you can do is set the PYTHONPATH environment variable explicitly.
Here's an example using bash:
export PYTHONPATH=PATH_TO_SRC:${PYTHONPATH}
then run your program as normal
Another approach is that you can explicitly set sys.path by appending to it upon execution of your program.
So, in your program.py, you would have:
if __name__ == '__main__':
import os
import sys
sys.path.append(os.path.dirname(os.path.dirname(__file__)))
your_main_function()
Lastly, for serious python development, you should consider virtualenv and virtualenvwrapper as it will take care of most of these things for you.
You need to add __init__.py to /programDir to interpret the directory as a package. Once a package, you can import the package's contents.
So, in your case, if /src is on the PYTHONPATH, from module.py you can import program.py with from programDir import program.
If you use program as part of a package, in another python module, such as
import src.programDir.program as p
p.some_method()
you can use relative import in program.py, assuming you are creating a package with src (__init__.py in both src and programDir)
from .. import module
If not, for example you are calling program.py from the command line, you must add the directory containing src to your search path either by modifying sys.path or the PYTHONPATH env var, before importing.

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