Python poetry install failure - invalid hashes - python

I'm unsure exactly what information / context to provide with this post in order for it to be
properly answered - so if I can add more information please let me know.
Whilst trying to install a package I've had an error message as follows:
Invalid hashes (sha256:01d6b62184e55367ce7d770bd87d97a6cfaf783ff7ba8328e7473a339fe19807) for numpy (1.22.2)
I don't know how to go about troubleshooting this problem.
poetry --version
(install-check-clU745_7-py3.8) ➜ install_check poetry --version
Poetry version 1.1.12
poetry env info
Output of poetry env info:
(install-check-clU745_7-py3.8) ➜ install_check poetry env info
Virtualenv
Python: 3.8.12
Implementation: CPython
Path: /Users/user_name/Library/Caches/pypoetry/virtualenvs/install-check-clU745_7-py3.8
Valid: True
System
Platform: darwin
OS: posix
Python: /Users/user_name/.pyenv/versions/3.8.12
pyproject.toml
pyproject.toml config:
(install-check-clU745_7-py3.8) ➜ install_check cat pyproject.toml
[tool.poetry]
name = "install_check"
version = "0.1.0"
description = ""
authors = ["user_name <user_name#email_add.com>"]
[tool.poetry.dependencies]
python = "^3.8"
[tool.poetry.dev-dependencies]
pytest = "^5.2"
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"
Steps to reproduce
Here is an attempt to clearly outline a reproduction of this problem:
python --version
Python 3.8.12
which python
/Users/user_name/.pyenv/shims/python
poetry new install_check
Created package install_check in install_check
cd install_check
cat pyproject.toml| grep python
python = "^3.7"
# update pyproject.toml to 3.8 instead of 3.7.
cat pyproject.toml | grep python
python = "^3.8"
python --version
Python 3.8.12
poetry env use python3.8
which python3.8
/Users/user_name/.pyenv/shims/python3.8
poetry env use python3.8
poetry install
Updating dependencies
Resolving dependencies... (5.0s)
Writing lock file
Package operations: 8 installs, 0 updates, 0 removals
• Installing pyparsing (3.0.7)
• Installing attrs (21.4.0)
• Installing more-itertools (8.12.0)
• Installing packaging (21.3)
• Installing pluggy (0.13.1)
• Installing py (1.11.0)
• Installing wcwidth (0.2.5)
• Installing pytest (5.4.3)
Installing the current project: install_check (0.1.0)
Following this, after leaving and revisiting the directory to activate the env, I have:
(install-check-clU745_7-py3.8) ➜ install_check which python
/Users/user_name/Library/Caches/pypoetry/virtualenvs/install-check-clU745_7-py3.8/bin/python
(install-check-clU745_7-py3.8) ➜ install_check python --version
Python 3.8.12
Trying to add pandas then gives the following error:
(install-check-clU745_7-py3.8) ➜ install_check poetry add pandas
Using version ^1.4.0 for pandas
Updating dependencies
Resolving dependencies... (2.3s)
Writing lock file
Package operations: 5 installs, 0 updates, 0 removals
• Installing six (1.16.0)
• Installing numpy (1.22.2): Failed
RuntimeError
Invalid hashes (sha256:01d6b62184e55367ce7d770bd87d97a6cfaf783ff7ba8328e7473a339fe19807) for numpy (1.22.2) using archive numpy-1.22.2-cp38-cp38-macosx_10_14_x86_64.whl. Expected one of sha256:03ae5850619abb34a879d5f2d4bb4dcd025d6d8fb72f5e461dae84edccfe129f, sha256:076aee5a3763d41da6bef9565fdf3cb987606f567cd8b104aded2b38b7b47abf, sha256:0b536b6840e84c1c6a410f3a5aa727821e6108f3454d81a5cd5900999ef04f89, sha256:15efb7b93806d438e3bc590ca8ef2f953b0ce4f86f337ef4559d31ec6cf9d7dd, sha256:168259b1b184aa83a514f307352c25c56af111c269ffc109d9704e81f72e764b, sha256:2638389562bda1635b564490d76713695ff497242a83d9b684d27bb4a6cc9d7a, sha256:3556c5550de40027d3121ebbb170f61bbe19eb639c7ad0c7b482cd9b560cd23b, sha256:4a176959b6e7e00b5a0d6f549a479f869829bfd8150282c590deee6d099bbb6e, sha256:515a8b6edbb904594685da6e176ac9fbea8f73a5ebae947281de6613e27f1956, sha256:55535c7c2f61e2b2fc817c5cbe1af7cb907c7f011e46ae0a52caa4be1f19afe2, sha256:59153979d60f5bfe9e4c00e401e24dfe0469ef8da6d68247439d3278f30a180f, sha256:60cb8e5933193a3cc2912ee29ca331e9c15b2da034f76159b7abc520b3d1233a, sha256:6767ad399e9327bfdbaa40871be4254d1995f4a3ca3806127f10cec778bd9896, sha256:76a4f9bce0278becc2da7da3b8ef854bed41a991f4226911a24a9711baad672c, sha256:8cf33634b60c9cef346663a222d9841d3bbbc0a2f00221d6bcfd0d993d5543f6, sha256:94dd11d9f13ea1be17bac39c1942f527cbf7065f94953cf62dfe805653da2f8f, sha256:aafa46b5a39a27aca566198d3312fb3bde95ce9677085efd02c86f7ef6be4ec7, sha256:badca914580eb46385e7f7e4e426fea6de0a37b9e06bec252e481ae7ec287082, sha256:d76a26c5118c4d96e264acc9e3242d72e1a2b92e739807b3b69d8d47684b6677.
at ~/Library/Application Support/pypoetry/venv/lib/python3.7/site-packages/poetry/installation/executor.py:632 in _download_link
628│ "Invalid hashes ({}) for {} using archive {}. Expected one of {}.".format(
629│ ", ".join(sorted(archive_hashes)),
630│ package,
631│ archive_path.name,
→ 632│ ", ".join(sorted(hashes)),
633│ )
634│ )
635│
636│ return archive
• Installing python-dateutil (2.8.2)
• Installing pytz (2021.3)
Failed to add packages, reverting the pyproject.toml file to its original content.
Attempt to solve
remove existing poetry installation
curl -sSL https://install.python-poetry.org | python3 - --uninstall
install specific poetry version
Trying to following this issue comment I installed with:
curl -sSL https://install.python-poetry.org | python3 - --version 1.1.8
Try creating another env like before (Still fails)
I'm still getting failures.
python --version
Python 3.8.12
poetry --version
Poetry version 1.1.8
poetry new install_check_2
Created package install_check_2 in install_check_2
cd install_check_2
Then within the newly created project:
poetry env use python3.8
Creating virtualenv install-check-2-1m3rSWN1-py3.8 in /Users/user_name/Library/Caches/pypoetry/virtualenvs
Using virtualenv: /Users/user_name/Library/Caches/pypoetry/virtualenvs/install-check-2-1m3rSWN1-py3.8
poetry install
Updating dependencies
Resolving dependencies... (4.9s)
Writing lock file
Package operations: 8 installs, 0 updates, 0 removals
• Installing pyparsing (3.0.7): Failed
AttributeError
'Link' object has no attribute 'is_absolute'
at ~/Library/Application Support/pypoetry/venv/lib/python3.8/site-packages/poetry/core/packages/file_dependency.py:33 in __init__
29│ self._path = path
30│ self._base = base or Path.cwd()
31│ self._full_path = path
32│
→ 33│ if not self._path.is_absolute():
34│ try:
35│ self._full_path = self._base.joinpath(self._path).resolve()
36│ except FileNotFoundError:
37│ raise ValueError("Directory {} does not exist".format(self._path))

There are several issue reports about invalid hashes. One common cause is running multiple Poetry instances simultaneously; another is aborted downloads (e.g. ^C). Poetry should be fixed to make corruption less likely to happen in such cases, and perhaps to try downloading corrupted files again automatically.
Until then, the workaround is to remove the offending file from the cache and let Poetry download a fresh copy.
You can find the full path to the offending file like this:
$ find ~/.cache/pypoetry -name numpy-1.22.2-cp38-cp38-macosx_10_14_x86_64.whl
Or, for the lazy, just blow away the entire cache:
$ rm -rf ~/.cache/pypoetry

I ctrl-C'd during a poetry install, which caused one of the cached wheels to partially download and have a hash that didn't match what was on PyPI.
On macOS with Poetry 1.1.13, the only method that worked for me was Yihua Zhou's comment:
rm -r ~/Library/Caches/pypoetry/cache
rm -r ~/Library/Caches/pypoetry/artifacts

Maybe this is a solution:
poetry cache clear . --all
rm poetry.lock
poetry install
https://github.com/python-poetry/poetry/issues/4523#issuecomment-923155835

If you're doing this in a Docker image, in addition to the answers above I also had to do:
docker builder prune
This could be necessary if taking using some of the more recent docker build caching features in the Dockerfile such as:
RUN --mount=type=cache,target=$POETRY_CACHE_DIR/cache \
--mount=type=cache,target=$POETRY_CACHE_DIR/artifacts \
poetry install
This is because the poetry cache is on the host file system and needs to be cleared for same reason as the answers above.

Related

Poetry install on an existing project Error "does not contain any element"

I am using Poetry for the first time.
I have a very simple project. Basically
a_project
|
|--test
| |---test_something.py
|
|-script_to_test.py
From a project I do poetry init and then poetry install
I get the following
poetry install
Updating dependencies
Resolving dependencies... (0.5s)
Writing lock file
Package operations: 7 installs, 0 updates, 0 removals
• Installing attrs (22.2.0)
• Installing exceptiongroup (1.1.0)
• Installing iniconfig (2.0.0)
• Installing packaging (23.0)
• Installing pluggy (1.0.0)
• Installing tomli (2.0.1)
• Installing pytest (7.2.1)
/home/me/MyStudy/2023/pyenv_practice/dos/a_project/a_project does not contain any element
after this I can run poetry run pytest without problem but what does that error message mean?
This is probably because Poetry tries to install your project but does not find it (there’s no a_project module inside your directory). You can tell it not to install the root project with --no-root:
poetry install --no-root
As of today there is no way to configure this to be the default (see this issue).
My issue got away after pointed correct interpreter in PyCharm. Poetry makes project environment in its own directories and PyCharm didn't link that correct.
I've added new environment in PyCharm and select poetary's just created enviroment in dialogs.
Check if your pyproject.toml contains something like:
[tool.poetry]
packages = [{include = "a_project"}]
Removing the line with packages = [{include = "a_project"}] helped in my case and should avoid including the root project. See documentation here.
create a dir with_your_package_name that u find in the file and an empty __init__.py in project root
delete the poetry.lock and install again

How to install scripts from pyproject.toml?

I have this snippet in my pyproject.toml
[tool.poetry.scripts]
devel = "uvicorn api:app --reload"
prod = "uvicorn api:app"
I install it as mentioned in poetry documentation
(wowtcg-tracker-api-dIKBwUYp-py3.10) bastakka#Karel-NTB:/m/c/U/b/D/P/I/w/wowtcg-tracker-api (main↓2|✚9…9)
» poetry install
Installing dependencies from lock file
Package operations: 38 installs, 0 updates, 0 removals
• Installing idna (3.3)
...
• Installing yapf (0.32.0)
(wowtcg-tracker-api-dIKBwUYp-py3.10) bastakka#Karel-NTB:/m/c/U/b/D/P/I/w/wowtcg-tracker-api (main↓2|✚9…9)
»
But there were no scripts generated from this command.
Poetry can't run them
…-tracker-api-dIKBwUYp-py3.10) bastakka#Karel-NTB:/m/c/U/b/D/P/I/w/wowtcg-tracker-api (main↓2|✚9…9)
» poetry run prod
ModuleOrPackageNotFound
No file/folder found for package wowtcg-tracker-api
at ~/.poetry/lib/poetry/_vendor/py3.10/poetry/core/masonry/utils/module.py:63 in __init__
59│ "from": str(src.relative_to(self._path)),
60│ }
61│ ]
62│ else:
→ 63│ raise ModuleOrPackageNotFound(
64│ "No file/folder found for package {}".format(name)
65│ )
66│
67│ for package in packages:
…-tracker-api-dIKBwUYp-py3.10) bastakka#Karel-NTB:/m/c/U/b/D/P/I/w/wowtcg-tracker-api (main↓2|✚9…9)
»
And there are none in the venv bin either
…-tracker-api-dIKBwUYp-py3.10) bastakka#Karel-NTB:/m/c/U/b/D/P/I/w/wowtcg-tracker-api (main↓2|✚9…9)
» ls /home/bastakka/.cache/pypoetry/virtualenvs/wowtcg-tracker-api-dIKBwUYp-py3.10/bin
activate dotenv* pip* pyreverse* watchgod*
activate.csh epylint* pip3* python# wheel*
activate.fish get_objgraph* pip-3.10* python3# wheel3*
activate.nu httpx* pip3.10* python3.10# wheel-3.10*
activate.ps1 isort* prisma* symilar* wheel3.10*
activate_this.py isort-identify-imports* prisma-client-py* undill* yapf*
deactivate.nu normalizer* pylint* uvicorn* yapf-diff*
…-tracker-api-dIKBwUYp-py3.10) bastakka#Karel-NTB:/m/c/U/b/D/P/I/w/wowtcg-tracker-api (main↓2|✚9…9)
»
Am I missing something needed or doing something wrong?
tool.poetry.scripts is used for "scripts or executables that will be installed when installing the package". You'd have to drop the poetry run prefix to run them.
For development scripts I'd recommend something like taskipy. e.g.
# pyproject.toml
[tool.taskipy.tasks]
devel = "uvicorn api:app --reload"
prod = "uvicorn api:app"
Then you can run something like poetry run task devel

How to add kaleido package to poetry.lock file?

When attempting to install "kaleido" via Poetry, I receive the following error message:
~ poetry add kaleido
Using version ^0.2.1 for kaleido
Updating dependencies
Resolving dependencies... (3.1s)
Package operations: 1 install, 0 updates, 0 removals
• Installing kaleido (0.2.1.post1): Failed
RuntimeError
Unable to find installation candidates for kaleido (0.2.1.post1)
at ~/.poetry/lib/poetry/installation/chooser.py:72 in choose_for
68│
69│ links.append(link)
70│
71│ if not links:
→ 72│ raise RuntimeError(
73│ "Unable to find installation candidates for {}".format(package)
74│ )
75│
76│ # Get the best link
However, the "kaleido" appears in the poetry.lock file:
[[package]]
name = "kaleido"
version = "0.2.1.post1"
description = "Static image export for web-based visualization libraries with zero dependencies"
category = "main"
optional = false
python-versions = "*"
If I try to export an image, I unsurprisingly receive the following error message:
ValueError:
Image export using the "kaleido" engine requires the kaleido package,
which can be installed using pip:
$ pip install -U kaleido
Does anyone know how to install this package via poetry (or amend the .lock file to do it manually)?
Firstly try to use a master version of poetry as advised in Github issue
or upgrade it to the latest version
pip3 install --upgrade poetry
Then try to install with kaleido with locked version:
poetry add kaleido==0.2.1
That worked in my case.

nrfutil - "ImportError: No module named main" on Nixos

I'm using the tool nrfutil which is implemented in Python. To be able to use it under NixOS I was using a default.nix file, that installed nrfutil into a venv. This worked for some time very well. (The last build on the build server using Nix within an alpine container could build the software I'm working on 11 days ago successfully.) When I do exactly the same things (i.e. restarting the CI server build without changes), the build fails now complaining about pip being incorrect:
$ nix-shell
New python executable in /home/matthias/source/tbconnect/bootloader/.venv/bin/python2.7
Not overwriting existing python script /home/matthias/source/tbconnect/bootloader/.venv/bin/python (you must use /home/matthias/source/tbconnect/bootloader/.venv/bin/python2.7)
Installing pip, wheel...
done.
Traceback (most recent call last):
File "/home/matthias/source/tbconnect/bootloader/.venv/bin/pip", line 6, in <module>
from pip._internal.main import main
ImportError: No module named main
To me it seems that the module main should exist:
$ ls -l .venv/lib/python2.7/site-packages/pip/_internal/main.py
-rw-r--r-- 1 matthias matthias 1359 10月 15 12:27 .venv/lib/python2.7/site-packages/pip/_internal/main.py
I'm not very much into the Python environment, so I don't know any further. Has somebody any pointer for me where to continue debugging? How is Python resolving modules? Why doesn't it find the module, that seems to be present to me?
This is my default.nix that I use to install pip:
with import <nixpkgs> {};
with pkgs.python27Packages;
stdenv.mkDerivation {
name = "impurePythonEnv";
buildInputs = [
automake
autoconf
gcc-arm-embedded-7
# these packages are required for virtualenv and pip to work:
#
python27Full
python27Packages.virtualenv
python27Packages.pip
# the following packages are related to the dependencies of your python
# project.
# In this particular example the python modules listed in the
# requirements.txt require the following packages to be installed locally
# in order to compile any binary extensions they may require.
#
taglib
openssl
git
stdenv
zlib ];
src = null;
shellHook = ''
# set SOURCE_DATE_EPOCH so that we can use python wheels
SOURCE_DATE_EPOCH=$(date +%s)
virtualenv --no-setuptools .venv
export PATH=$PWD/.venv/bin:$PATH
#pip install nrfutil
pip help
# the following is required to build micro_ecc_lib_nrf52.a in the SDK
export GNU_INSTALL_ROOT="${gcc-arm-embedded-7}/bin/"
unset CC
'';
}
I replaced pip install nrfutil with pip help to make sure the problem is not the package I try to install itself.
I'm still using python 2.7 as the nrfutil still is not fit for Python 3.
Anyway replacing python27 with python37 did not change the error I get when trying to start pip.)
NixOS version used locally is 19.09. Nix in the CI docker container is nixos/nix:latest which is the nix package manager on Alpine Linux.
Update:
Actually it works when I replace the call to pip install nrfutil with python2.7 -m pip install nrfutil. This actually confuses me even more. python2.7 is exactly the binary that is in the shebang of pip:
[nix-shell:~/source/tbconnect/bootloader]$ type python2.7
python2.7 is /home/matthias/source/tbconnect/bootloader/.venv/bin/python2.7
[nix-shell:~/source/tbconnect/bootloader]$ type pip
pip is /home/matthias/source/tbconnect/bootloader/.venv/bin/pip
[nix-shell:~/source/tbconnect/bootloader]$ head --lines 2 .venv/bin/pip
#!/home/matthias/source/tbconnect/bootloader/.venv/bin/python2.7
# -*- coding: utf-8 -*-
Update 2:
I found out that another way to fix the problem is to edit .venv/bin/pip. This script tried the following import:
from pip._internal.main import main
Which I think is the new module path starting with pip 19.3. But I still have pip 19.2. When I change this line to:
from pip._internal import main
Running pip by typing pip is working.
The thing is I have no idea why the pip script is trying to load the new module path while NixOS still has the old version of pip.
I also opened an issue for NixOS on GitHub: https://github.com/NixOS/nixpkgs/issues/71178
I got your shell derivation to work by dropping the Python27Packages.pip,
(nix-shell) 2d [azul:/tmp/lixo12333] $
>>> pip list
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
Package Version
---------------- -------
behave 1.2.6
Click 7.0
crcmod 1.7
ecdsa 0.13.3
enum34 1.1.6
future 0.18.2
intelhex 2.2.1
ipaddress 1.0.23
libusb1 1.7.1
linecache2 1.0.0
nrfutil 5.2.0
parse 1.12.1
parse-type 0.5.2
pc-ble-driver-py 0.11.4
piccata 1.0.1
pip 19.3.1
protobuf 3.10.0
pyserial 3.4
pyspinel 1.0.0a3
PyYAML 4.2b4
setuptools 41.6.0
six 1.12.0
tqdm 4.37.0
traceback2 1.4.0
virtualenv 16.4.3
wheel 0.33.6
wrapt 1.11.2
(nix-shell) 2d [azul:/tmp/lixo12333] $
and my default.nix
with import <nixpkgs> {};
with pkgs.python27Packages;
stdenv.mkDerivation {
name = "impurePythonEnv";
buildInputs = [
automake
autoconf
gcc-arm-embedded-7
# these packages are required for virtualenv and pip to work:
#
python27Full
python27Packages.virtualenv
# the following packages are related to the dependencies of your python
# project.
# In this particular example the python modules listed in the
# requirements.txt require the following packages to be installed locally
# in order to compile any binary extensions they may require.
#
taglib
openssl
git
stdenv
zlib ];
src = null;
shellHook = ''
# set SOURCE_DATE_EPOCH so that we can use python wheels
SOURCE_DATE_EPOCH=$(date +%s)
virtualenv .venv
export PATH=$PWD/.venv/bin:$PATH
pip install nrfutil
#pip help
# the following is required to build micro_ecc_lib_nrf52.a in the SDK
export GNU_INSTALL_ROOT="${gcc-arm-embedded-7}/bin/"
unset CC
'';
}

Minimal working example for conda package build

I am trying to look into conda for python package/virtual environments management. However, I can't seem to be able to build my own conda package. Could somebody help me to construct a minimal working example?
First of all some directory structure:
- src/
|- foo1.py
|- foo2.py
- conda-build/
|- meta.yaml
- setup.py
Running python setup.py install installs the packages using pip. Now if I try to cd to the conda-build directory and run conda build . I get the following output
Removing old build directory
Removing old work directory
BUILD START: example_pkg-0.5.1-abc
Fetching package metadata: ......
Solving package specifications: .
The following NEW packages will be INSTALLED:
pip: 6.1.1-py34_0
python: 3.4.3-0
setuptools: 15.0-py34_0
Linking packages ...
[ COMPLETE ]|##################################################| 100%
Removing old work directory
Copying C:\some\path\ to C:\Anaconda3\conda-bld\work
Package: example_pkg-0.5.1-abc
source tree in: C:\Anaconda3\conda-bld\work
number of files: 0
Fixing permissions
Fixing permissions
BUILD END: example_pkg-0.5.1-abc
Nothing to test for: example_pkg-0.5.1-abc
# If you want to upload this package to binstar.org later, type:
#
# $ binstar upload C:\Anaconda3\conda-bld\win-64\example_pkg-0.5.1- abc.tar.bz2
#
# To have conda build upload to binstar automatically, use
# $ conda config --set binstar_upload yes
I can indeed find the package in the directory C:\Anaconda3\conda-bld\win-64 but the package does not seem to contain any files. I can install the package using conda install --use-local .\example_pkg-0.5.1-abc.tar.bz2 and then it is listed by conda list, however I cannot import it in Python. This is my meta.yaml:
package:
name: example_pkg
version: "0.5.1"
source:
path: ../src
build:
number: 1
string: abc
script: python setup.py install
requirements:
build:
- python
run:
- python
Any help is greatly appreciated! :)
Looks like there's an issue where build/script doesn't work on Windows. Until that PR is merged, you should just create a bld.bat with
python setup.py install
if errorlevel 1 exit 1
and put it in the conda recipe.

Categories