I'm having trouble installing pygraphviz and I'm using Anaconda on macOS Monterey.
I already had graphviz on Anaconda. I then did
brew install graphviz
and then
pip install pygraphviz
but I keep getting this error:
Collecting pygraphviz
Using cached pygraphviz-1.7.zip (118 kB)
Building wheels for collected packages: pygraphviz
Building wheel for pygraphviz (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /Users/susiekim4/opt/anaconda3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/j5/z34rlnbj2l94p1hh0x_hkkjw0000gn/T/pip-install-zr2twxnl/pygraphviz_e78bc2c823034812a5ffbd6ef61160d7/setup.py'"'"'; __file__='"'"'/private/var/folders/j5/z34rlnbj2l94p1hh0x_hkkjw0000gn/T/pip-install-zr2twxnl/pygraphviz_e78bc2c823034812a5ffbd6ef61160d7/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/j5/z34rlnbj2l94p1hh0x_hkkjw0000gn/T/pip-wheel-4fuwg_2b
cwd: /private/var/folders/j5/z34rlnbj2l94p1hh0x_hkkjw0000gn/T/pip-install-zr2twxnl/pygraphviz_e78bc2c823034812a5ffbd6ef61160d7/
Complete output (71 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-3.8
creating build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/scraper.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/graphviz.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/agraph.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/testing.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
creating build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_unicode.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_scraper.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_readwrite.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_string.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_html.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_node_attributes.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_drawing.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_subgraph.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_close.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_edge_attributes.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_clear.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_layout.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_attribute_defaults.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_graph.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
running egg_info
writing pygraphviz.egg-info/PKG-INFO
writing dependency_links to pygraphviz.egg-info/dependency_links.txt
writing top-level names to pygraphviz.egg-info/top_level.txt
reading manifest file 'pygraphviz.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.png' under directory 'doc'
warning: no files found matching '*.txt' under directory 'doc'
warning: no files found matching '*.css' under directory 'doc'
warning: no previously-included files matching '*~' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '.svn' found anywhere in distribution
no previously-included directories found matching 'doc/build'
writing manifest file 'pygraphviz.egg-info/SOURCES.txt'
copying pygraphviz/graphviz.i -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/graphviz_wrap.c -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
running build_ext
building 'pygraphviz._graphviz' extension
creating build/temp.macosx-10.9-x86_64-3.8
creating build/temp.macosx-10.9-x86_64-3.8/pygraphviz
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/susiekim4/opt/anaconda3/include -arch x86_64 -I/Users/susiekim4/opt/anaconda3/include -arch x86_64 -I/Users/susiekim4/opt/anaconda3/include/python3.8 -c pygraphviz/graphviz_wrap.c -o build/temp.macosx-10.9-x86_64-3.8/pygraphviz/graphviz_wrap.o
pygraphviz/graphviz_wrap.c:1756:7: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
0, /* tp_print */
^
/Users/susiekim4/opt/anaconda3/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
^
/Users/susiekim4/opt/anaconda3/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
pygraphviz/graphviz_wrap.c:1923:7: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
0, /* tp_print */
^
/Users/susiekim4/opt/anaconda3/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
^
/Users/susiekim4/opt/anaconda3/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
pygraphviz/graphviz_wrap.c:2711:10: fatal error: 'graphviz/cgraph.h' file not found
#include "graphviz/cgraph.h"
^~~~~~~~~~~~~~~~~~~
2 warnings and 1 error generated.
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for pygraphviz
Running setup.py clean for pygraphviz
Failed to build pygraphviz
Installing collected packages: pygraphviz
Running setup.py install for pygraphviz ... error
ERROR: Command errored out with exit status 1:
command: /Users/susiekim4/opt/anaconda3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/j5/z34rlnbj2l94p1hh0x_hkkjw0000gn/T/pip-install-zr2twxnl/pygraphviz_e78bc2c823034812a5ffbd6ef61160d7/setup.py'"'"'; __file__='"'"'/private/var/folders/j5/z34rlnbj2l94p1hh0x_hkkjw0000gn/T/pip-install-zr2twxnl/pygraphviz_e78bc2c823034812a5ffbd6ef61160d7/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/j5/z34rlnbj2l94p1hh0x_hkkjw0000gn/T/pip-record-pnja99aw/install-record.txt --single-version-externally-managed --compile --install-headers /Users/susiekim4/opt/anaconda3/include/python3.8/pygraphviz
cwd: /private/var/folders/j5/z34rlnbj2l94p1hh0x_hkkjw0000gn/T/pip-install-zr2twxnl/pygraphviz_e78bc2c823034812a5ffbd6ef61160d7/
Complete output (71 lines):
running install
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-3.8
creating build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/scraper.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/graphviz.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/agraph.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/testing.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
creating build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_unicode.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_scraper.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_readwrite.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_string.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_html.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_node_attributes.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_drawing.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_subgraph.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_close.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_edge_attributes.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_clear.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_layout.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_attribute_defaults.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_graph.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
running egg_info
writing pygraphviz.egg-info/PKG-INFO
writing dependency_links to pygraphviz.egg-info/dependency_links.txt
writing top-level names to pygraphviz.egg-info/top_level.txt
reading manifest file 'pygraphviz.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.png' under directory 'doc'
warning: no files found matching '*.txt' under directory 'doc'
warning: no files found matching '*.css' under directory 'doc'
warning: no previously-included files matching '*~' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '.svn' found anywhere in distribution
no previously-included directories found matching 'doc/build'
writing manifest file 'pygraphviz.egg-info/SOURCES.txt'
copying pygraphviz/graphviz.i -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/graphviz_wrap.c -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
running build_ext
building 'pygraphviz._graphviz' extension
creating build/temp.macosx-10.9-x86_64-3.8
creating build/temp.macosx-10.9-x86_64-3.8/pygraphviz
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/susiekim4/opt/anaconda3/include -arch x86_64 -I/Users/susiekim4/opt/anaconda3/include -arch x86_64 -I/Users/susiekim4/opt/anaconda3/include/python3.8 -c pygraphviz/graphviz_wrap.c -o build/temp.macosx-10.9-x86_64-3.8/pygraphviz/graphviz_wrap.o
pygraphviz/graphviz_wrap.c:1756:7: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
0, /* tp_print */
^
/Users/susiekim4/opt/anaconda3/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
^
/Users/susiekim4/opt/anaconda3/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
pygraphviz/graphviz_wrap.c:1923:7: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
0, /* tp_print */
^
/Users/susiekim4/opt/anaconda3/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
^
/Users/susiekim4/opt/anaconda3/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
pygraphviz/graphviz_wrap.c:2711:10: fatal error: 'graphviz/cgraph.h' file not found
#include "graphviz/cgraph.h"
^~~~~~~~~~~~~~~~~~~
2 warnings and 1 error generated.
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /Users/susiekim4/opt/anaconda3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/j5/z34rlnbj2l94p1hh0x_hkkjw0000gn/T/pip-install-zr2twxnl/pygraphviz_e78bc2c823034812a5ffbd6ef61160d7/setup.py'"'"'; __file__='"'"'/private/var/folders/j5/z34rlnbj2l94p1hh0x_hkkjw0000gn/T/pip-install-zr2twxnl/pygraphviz_e78bc2c823034812a5ffbd6ef61160d7/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/j5/z34rlnbj2l94p1hh0x_hkkjw0000gn/T/pip-record-pnja99aw/install-record.txt --single-version-externally-managed --compile --install-headers /Users/susiekim4/opt/anaconda3/include/python3.8/pygraphviz Check the logs for full command output.
I've tried pip3 install, pip install cgraph, and the other solutions.
What am I missing?
You can use Homebrew to install graphviz first:
brew install graphviz
Check where it was installed with brew info graphviz.
$ brew info graphviz
graphviz: stable 2.50.0 (bottled), HEAD
Graph visualization software from AT&T and Bell Labs
https://www.graphviz.org/
/usr/local/Cellar/graphviz/2.50.0 (292 files, 6.9MB) *
...
In my case, it was installed in /usr/local/Cellar/graphviz/2.50.0.
Then run:
export GRAPHVIZ_DIR="/usr/local/Cellar/graphviz/<VERSION>"
pip install pygraphviz --global-option=build_ext --global-option="-I$GRAPHVIZ_DIR/include" --global-option="-L$GRAPHVIZ_DIR/lib"
where you set the GRAPHVIZ_DIR path and the <VERSION> with the version you got with brew info graphviz.
For me it worked using this:
python -m pip install \
--global-option=build_ext \
--global-option="-I$(brew --prefix graphviz)/include/" \
--global-option="-L$(brew --prefix graphviz)/lib/" \
pygraphviz
I copy /opt/homebrew/bin/dot to /usr/local/bin/dot, restart the visual studio code and done!
Command:
sudo cp /opt/homebrew/bin/dot /usr/local/bin/dot
Highly recommend the only solution that worked for me from azabraoo:
pip install --global-option=build_ext --global-option="-I$(brew --prefix graphviz)/include/" --global-option="-L$(brew --prefix graphviz)/lib/" pygraphviz
Related
I'm trying to install pygraphviz in order to get layouts for my network. However, I have trouble installing pygraphviz using pip install pygraphviz. I get the following lengthy error:
ERROR: Command errored out with exit status 1:
command: /opt/anaconda3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/w0/pv1mwphj1t552sml25d44bq40000gn/T/pip-install-dabvxss7/pygraphviz/setup.py'"'"'; __file__='"'"'/private/var/folders/w0/pv1mwphj1t552sml25d44bq40000gn/T/pip-install-dabvxss7/pygraphviz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/w0/pv1mwphj1t552sml25d44bq40000gn/T/pip-wheel-ktbtqll_
cwd: /private/var/folders/w0/pv1mwphj1t552sml25d44bq40000gn/T/pip-install-dabvxss7/pygraphviz/
Complete output (71 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-3.8
creating build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/scraper.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/graphviz.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/agraph.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/testing.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
creating build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_unicode.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_scraper.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_readwrite.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_string.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_html.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_node_attributes.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_drawing.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_subgraph.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_close.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_edge_attributes.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_clear.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_layout.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_attribute_defaults.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_graph.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
running egg_info
writing pygraphviz.egg-info/PKG-INFO
writing dependency_links to pygraphviz.egg-info/dependency_links.txt
writing top-level names to pygraphviz.egg-info/top_level.txt
reading manifest file 'pygraphviz.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.png' under directory 'doc'
warning: no files found matching '*.txt' under directory 'doc'
warning: no files found matching '*.css' under directory 'doc'
warning: no previously-included files matching '*~' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '.svn' found anywhere in distribution
no previously-included directories found matching 'doc/build'
writing manifest file 'pygraphviz.egg-info/SOURCES.txt'
copying pygraphviz/graphviz.i -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/graphviz_wrap.c -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
running build_ext
building 'pygraphviz._graphviz' extension
creating build/temp.macosx-10.9-x86_64-3.8
creating build/temp.macosx-10.9-x86_64-3.8/pygraphviz
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/include -arch x86_64 -I/opt/anaconda3/include -arch x86_64 -I/opt/anaconda3/include/python3.8 -c pygraphviz/graphviz_wrap.c -o build/temp.macosx-10.9-x86_64-3.8/pygraphviz/graphviz_wrap.o
pygraphviz/graphviz_wrap.c:1756:7: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
0, /* tp_print */
^
/opt/anaconda3/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
^
/opt/anaconda3/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
pygraphviz/graphviz_wrap.c:1923:7: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
0, /* tp_print */
^
/opt/anaconda3/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
^
/opt/anaconda3/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
pygraphviz/graphviz_wrap.c:2711:10: fatal error: 'graphviz/cgraph.h' file not found
#include "graphviz/cgraph.h"
^~~~~~~~~~~~~~~~~~~
2 warnings and 1 error generated.
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for pygraphviz
Running setup.py clean for pygraphviz
Failed to build pygraphviz
Installing collected packages: pygraphviz
Running setup.py install for pygraphviz ... error
ERROR: Command errored out with exit status 1:
command: /opt/anaconda3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/w0/pv1mwphj1t552sml25d44bq40000gn/T/pip-install-dabvxss7/pygraphviz/setup.py'"'"'; __file__='"'"'/private/var/folders/w0/pv1mwphj1t552sml25d44bq40000gn/T/pip-install-dabvxss7/pygraphviz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/w0/pv1mwphj1t552sml25d44bq40000gn/T/pip-record-p4ku8efv/install-record.txt --single-version-externally-managed --compile --install-headers /opt/anaconda3/include/python3.8/pygraphviz
cwd: /private/var/folders/w0/pv1mwphj1t552sml25d44bq40000gn/T/pip-install-dabvxss7/pygraphviz/
Complete output (71 lines):
running install
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-3.8
creating build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/scraper.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/graphviz.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/agraph.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/testing.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
creating build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_unicode.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_scraper.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_readwrite.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_string.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_html.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_node_attributes.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_drawing.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_subgraph.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_close.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_edge_attributes.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_clear.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_layout.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_attribute_defaults.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
copying pygraphviz/tests/test_graph.py -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz/tests
running egg_info
writing pygraphviz.egg-info/PKG-INFO
writing dependency_links to pygraphviz.egg-info/dependency_links.txt
writing top-level names to pygraphviz.egg-info/top_level.txt
reading manifest file 'pygraphviz.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.png' under directory 'doc'
warning: no files found matching '*.txt' under directory 'doc'
warning: no files found matching '*.css' under directory 'doc'
warning: no previously-included files matching '*~' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '.svn' found anywhere in distribution
no previously-included directories found matching 'doc/build'
writing manifest file 'pygraphviz.egg-info/SOURCES.txt'
copying pygraphviz/graphviz.i -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
copying pygraphviz/graphviz_wrap.c -> build/lib.macosx-10.9-x86_64-3.8/pygraphviz
running build_ext
building 'pygraphviz._graphviz' extension
creating build/temp.macosx-10.9-x86_64-3.8
creating build/temp.macosx-10.9-x86_64-3.8/pygraphviz
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/include -arch x86_64 -I/opt/anaconda3/include -arch x86_64 -I/opt/anaconda3/include/python3.8 -c pygraphviz/graphviz_wrap.c -o build/temp.macosx-10.9-x86_64-3.8/pygraphviz/graphviz_wrap.o
pygraphviz/graphviz_wrap.c:1756:7: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
0, /* tp_print */
^
/opt/anaconda3/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
^
/opt/anaconda3/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
pygraphviz/graphviz_wrap.c:1923:7: warning: 'tp_print' is deprecated [-Wdeprecated-declarations]
0, /* tp_print */
^
/opt/anaconda3/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here
Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
^
/opt/anaconda3/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
pygraphviz/graphviz_wrap.c:2711:10: fatal error: 'graphviz/cgraph.h' file not found
#include "graphviz/cgraph.h"
^~~~~~~~~~~~~~~~~~~
2 warnings and 1 error generated.
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /opt/anaconda3/bin/python -u -c
Does anyone know how to fix this issue. I've been going through a lot of stack overlfow threads, but nothing worked. Thanks for your suggestions!
PyGraphviz requires the graphviz library to be installed. The easiest way to do this is probably to use homebrew, as described in the macOS section of the PyGraphviz installation docs.
I had the same problem, however direct recommendations are not working properly.
So, the sequence is the following:
brew install graphviz
pip install --install-option="--include-path=/opt/local/include" --install-option="--library-path=/opt/local/lib" pygraphviz
The second — is how to force pip to find a correct path to header files after brew install.
Mac OS Big Sur update causing pip install requirements for django 1.11 with cffi error. How can I resolve this ?
Running setup.py install for cffi ... error
ERROR: Command errored out with exit status 1:
command: /Users/axil/Documents/project/projectdotcom/projectdotcomenv_v2/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/gp/2f22kt6s75d8tf653xq_5rfh0000gn/T/pip-install-nsm19ufc/cffi_73cb07cbfd52456caf370009aa7e0938/setup.py'"'"'; __file__='"'"'/private/var/folders/gp/2f22kt6s75d8tf653xq_5rfh0000gn/T/pip-install-nsm19ufc/cffi_73cb07cbfd52456caf370009aa7e0938/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/gp/2f22kt6s75d8tf653xq_5rfh0000gn/T/pip-record-y3_9oop2/install-record.txt --single-version-externally-managed --compile --install-headers /Users/axil/Documents/project/projectdotcom/projectdotcomenv_v2/include/site/python3.8/cffi
cwd: /private/var/folders/gp/2f22kt6s75d8tf653xq_5rfh0000gn/T/pip-install-nsm19ufc/cffi_73cb07cbfd52456caf370009aa7e0938/
Complete output (65 lines):
running install
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-3.8
creating build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/backend_ctypes.py -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/error.py -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/setuptools_ext.py -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/cffi_opcode.py -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/vengine_gen.py -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/model.py -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/ffiplatform.py -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/api.py -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/vengine_cpy.py -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/commontypes.py -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/lock.py -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/recompiler.py -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/cparser.py -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/verifier.py -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/_cffi_include.h -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/parse_c_type.h -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/_embedding.h -> build/lib.macosx-10.9-x86_64-3.8/cffi
copying cffi/_cffi_errors.h -> build/lib.macosx-10.9-x86_64-3.8/cffi
running build_ext
building '_cffi_backend' extension
creating build/temp.macosx-10.9-x86_64-3.8
creating build/temp.macosx-10.9-x86_64-3.8/c
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch x86_64 -g -DUSE__THREAD -DHAVE_SYNC_SYNCHRONIZE -I/usr/local/Cellar/libffi/3.3/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/ffi -I/Users/axil/Documents/project/projectdotcom/projectdotcomenv_v2/include -I/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8 -c c/_cffi_backend.c -o build/temp.macosx-10.9-x86_64-3.8/c/_cffi_backend.o
c/_cffi_backend.c:4197:31: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
*p_printable_filename = PyText_AsUTF8(s);
^ ~~~~~~~~~~~~~~~~
c/_cffi_backend.c:5911:9: warning: 'ffi_prep_closure' is deprecated [-Wdeprecated-declarations]
if (ffi_prep_closure(closure, &cif_descr->cif,
^
/usr/local/Cellar/libffi/3.3/include/ffi.h:341:18: note: 'ffi_prep_closure' has been explicitly marked deprecated here
__attribute__((deprecated))
^
In file included from c/_cffi_backend.c:7370:
In file included from c/cffi1_module.c:20:
c/call_python.c:20:30: error: incomplete definition of type 'struct _is'
builtins = tstate->interp->builtins;
~~~~~~~~~~~~~~^
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/pystate.h:20:8: note: forward declaration of 'struct _is'
struct _is;
^
In file included from c/_cffi_backend.c:7370:
In file included from c/cffi1_module.c:20:
c/call_python.c:160:39: error: incomplete definition of type 'struct _is'
new1 = PyThreadState_GET()->interp->modules;
~~~~~~~~~~~~~~~~~~~~~~~~~~~^
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/pystate.h:20:8: note: forward declaration of 'struct _is'
struct _is;
^
In file included from c/_cffi_backend.c:7370:
In file included from c/cffi1_module.c:20:
c/call_python.c:249:63: error: incomplete definition of type 'struct _is'
if (externpy->reserved1 != PyThreadState_GET()->interp->modules) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~^
/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8/pystate.h:20:8: note: forward declaration of 'struct _is'
struct _is;
^
2 warnings and 3 errors generated.
error: command 'gcc' failed with exit status 1
I have the similarity problem.
maybe, your python's version is too high, you can change your python version to 3.6, it will be ok.
So I am setting up an old project it's Python 2 and Django 1 where I'm stuck with the installation of requirement.txt. This is the main error I'm getting while installing
Building wheel for MySQL-python (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /home/rehman/projects/cjs/bin/python2 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-KyvPG6/MySQL-python/setup.py'"'"'; __file__='"'"'/tmp/pip-install-KyvPG6/MySQL-python/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-jCT7NK
cwd: /tmp/pip-install-KyvPG6/MySQL-python/
Complete output (38 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.7
copying _mysql_exceptions.py -> build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/__init__.py -> build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/converters.py -> build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/connections.py -> build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/cursors.py -> build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/release.py -> build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/times.py -> build/lib.linux-x86_64-2.7/MySQLdb
creating build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/__init__.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/CR.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/FIELD_TYPE.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/ER.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/FLAG.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/REFRESH.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/CLIENT.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
running build_ext
building '_mysql' extension
creating build/temp.linux-x86_64-2.7
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Dversion_info=(1,2,5,'final',1) -D__version__=1.2.5 -I/usr/include/mariadb -I/usr/include/mariadb/mysql -I/usr/include/python2.7 -c _mysql.c -o build/temp.linux-x86_64-2.7/_mysql.o
In file included from _mysql.c:44:
/usr/include/mariadb/my_config.h:3:2: warning: #warning This file should not be included by clients, include only <mysql.h> [-Wcpp]
#warning This file should not be included by clients, include only <mysql.h>
^~~~~~~
In file included from _mysql.c:46:
/usr/include/mariadb/mysql.h:444:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
MYSQL_CLIENT_PLUGIN_HEADER
^~~~~~~~~~~~~~~~~~~~~~~~~~
_mysql.c: In function ‘_mysql_ConnectionObject_ping’:
_mysql.c:2005:41: error: ‘MYSQL’ {aka ‘struct st_mysql’} has no member named ‘reconnect’
if ( reconnect != -1 ) self->connection.reconnect = reconnect;
^
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for MySQL-python
Running setup.py clean for MySQL-python
Building wheel for torctl (setup.py) ... done
Created wheel for torctl: filename=torctl-0.2-py2-none-any.whl size=67317 sha256=3cfc42c3313ca9a9b220dc844f65156a0134bb5c7f63dba0327fefe57fb64705
Stored in directory: /tmp/pip-ephem-wheel-cache-M4548v/wheels/c4/3a/87/1d604378e37b4c4d4c07b26c7866955102de8d824553cec0ec
Successfully built torctl
Failed to build MySQL-python
Installing collected packages: Django, pycrypto, six, ecdsa, paramiko, Fabric, GeoIP, Markdown, MySQL-python, Pillow, Unidecode, amqp, anyjson, beautifulsoup4, billiard, pytz, kombu, celery, colorama, configobj, django-celery, django-filter, django-mailchimp-v1.3, djangorestframework, httplib2, uritemplate, pyasn1, rsa, pyasn1-modules, oauth2client, google-api-python-client, html5lib, meld3, mysql-connector, oauth2, python-Levenshtein, python-dateutil, redis, requests, stripe, supervisor, urllib3, vine, pyyaml, ua-parser, user-agents, django-user-agents, contextlib2, raven, enum34, ipaddress, pycparser, cffi, cryptography, PyOpenSSL, ndg-httpsclient, pycryptodomex, future, pyjwkest, python-openid, oauthlib, requests-oauthlib, PyJWT, social-auth-core, social-auth-app-django, django-js-asset, django-ckeditor, django-compat, django-hijack, django-hijack-admin, torctl
Running setup.py install for MySQL-python ... error
ERROR: Command errored out with exit status 1:
command: /home/rehman/projects/cjs/bin/python2 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-KyvPG6/MySQL-python/setup.py'"'"'; __file__='"'"'/tmp/pip-install-KyvPG6/MySQL-python/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-nSvXLQ/install-record.txt --single-version-externally-managed --compile --install-headers /home/rehman/projects/cjs/include/site/python2.7/MySQL-python
cwd: /tmp/pip-install-KyvPG6/MySQL-python/
Complete output (38 lines):
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.7
copying _mysql_exceptions.py -> build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/__init__.py -> build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/converters.py -> build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/connections.py -> build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/cursors.py -> build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/release.py -> build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/times.py -> build/lib.linux-x86_64-2.7/MySQLdb
creating build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/__init__.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/CR.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/FIELD_TYPE.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/ER.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/FLAG.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/REFRESH.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/CLIENT.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
running build_ext
building '_mysql' extension
creating build/temp.linux-x86_64-2.7
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Dversion_info=(1,2,5,'final',1) -D__version__=1.2.5 -I/usr/include/mariadb -I/usr/include/mariadb/mysql -I/usr/include/python2.7 -c _mysql.c -o build/temp.linux-x86_64-2.7/_mysql.o
In file included from _mysql.c:44:
/usr/include/mariadb/my_config.h:3:2: warning: #warning This file should not be included by clients, include only <mysql.h> [-Wcpp]
#warning This file should not be included by clients, include only <mysql.h>
^~~~~~~
In file included from _mysql.c:46:
/usr/include/mariadb/mysql.h:444:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
MYSQL_CLIENT_PLUGIN_HEADER
^~~~~~~~~~~~~~~~~~~~~~~~~~
_mysql.c: In function ‘_mysql_ConnectionObject_ping’:
_mysql.c:2005:41: error: ‘MYSQL’ {aka ‘struct st_mysql’} has no member named ‘reconnect’
if ( reconnect != -1 ) self->connection.reconnect = reconnect;
^
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /home/rehman/projects/comparedjs/bin/python2 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-KyvPG6/MySQL-python/setup.py'"'"'; __file__='"'"'/tmp/pip-install-KyvPG6/MySQL-python/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-nSvXLQ/install-record.txt --single-version-externally-managed --compile --install-headers /home/rehman/projects/cjs/include/site/python2.7/MySQL-python Check the logs for full command output.
This is requirement.txt
Django==1.9.7
Fabric==1.11.1
GeoIP==1.3.2
Markdown==2.6.6
MySQL-python==1.2.5
Pillow==3.3.0
Unidecode==0.04.19
amqp==1.4.9
anyjson==0.3.3
argparse==1.2.1
beautifulsoup4==4.2.1
billiard==3.3.0.22
celery==3.1.18
colorama==0.2.5
configobj
django-celery==3.1.17
django-filter==0.13.0
django-mailchimp-v1.3==1.4.0
djangorestframework==3.4.1
google-api-python-client==1.6.2
html5lib==0.999
httplib2==0.10.3
kombu==3.0.37
#newspaper == 0.1.0.7
meld3==1.0.2
mysql-connector
oauth2
oauth2client
#pyinotify
#pyserial
python-Levenshtein
python-dateutil
redis
requests==2.9.1
six==1.10.0
#ssh-import-id
stripe==1.46.0
supervisor==3.2.1
git+https://github.com/aaronsw/pytorctl.git
uritemplate==3.0.0
urllib3==1.7.1
vine==1.1.3
wsgiref==0.1.2
#zope.interface==4.0.5
pyyaml
ua-parser
user-agents
django-user-agents
raven
pyasn1
ndg-httpsclient
pyjwkest
social-auth-app-django
social-auth-core
django-ckeditor==5.4.0
django-hijack
django-hijack-admin
What I searched and got a clue that its somewhat related to the wheel, it's causing the issue and by this link I get to know that I need to download a .whl file and extract it manually for MySQL-python so I found 2 files through this link and when I try to execute .whl file by pip install MySQL_python-1.2.5-cp27-none-win32.whl it's giving me error ERROR: MySQL_python-1.2.5-cp27-none-win_amd64.whl is not a supported wheel on this platform.
I eventually figured out its for Windows platform. So if mysql-python is for Windows platform what do I install for Linux? I am using Debian 10.
Simply install mysqlclient instead of MySQL-python, it's a drop-in replacement that's more maintained.
Note: This problem is not covered in any of these posts: 1, 2, 3.
The aim is to get PyGraphviz installed to work with visualualization tools provided by python-weka-wrapper. I just couldn't install PyGraphviz. The following is the error I get when trying from pip
$ sudo pip install git+git://github.com/pygraphviz/pygraphviz.git
Password:
The directory '/Users/Ebe/Library/Caches/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
The directory '/Users/Ebe/Library/Caches/pip' or its parent directory is not owned by the current user and caching wheels has been disabled. check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
Collecting git+git://github.com/pygraphviz/pygraphviz.git
Cloning git://github.com/pygraphviz/pygraphviz.git to /tmp/pip-rMp2aK-build
Installing collected packages: pygraphviz
Running setup.py install for pygraphviz ... error
Complete output from command /opt/local/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -u -c "import setuptools, tokenize;__file__='/tmp/pip-rMp2aK-build/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-CrnqPI-record/install-record.txt --single-version-externally-managed --compile:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/setuptools/dist.py:282: UserWarning: Normalizing '1.4.dev' to '1.4.dev0'
normalized_version,
running install
Trying pkg-config
include_dirs=/opt/local/include/graphviz
library_dirs=/opt/local/lib
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-2.7
creating build/lib.macosx-10.9-x86_64-2.7/pygraphviz
copying pygraphviz/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz
copying pygraphviz/agraph.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz
copying pygraphviz/graphviz.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz
copying pygraphviz/release.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz
copying pygraphviz/version.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz
creating build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
copying pygraphviz/tests/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
copying pygraphviz/tests/test.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
copying pygraphviz/tests/test_attribute_defaults.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
copying pygraphviz/tests/test_attributes.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
copying pygraphviz/tests/test_clear.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
copying pygraphviz/tests/test_drawing.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
copying pygraphviz/tests/test_edge_attributes.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
copying pygraphviz/tests/test_graph.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
copying pygraphviz/tests/test_html.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
copying pygraphviz/tests/test_layout.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
copying pygraphviz/tests/test_node_attributes.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
copying pygraphviz/tests/test_readwrite.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
copying pygraphviz/tests/test_string.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
copying pygraphviz/tests/test_subgraph.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
copying pygraphviz/tests/test_unicode.py -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz/tests
running egg_info
creating pygraphviz.egg-info
writing pygraphviz.egg-info/PKG-INFO
writing top-level names to pygraphviz.egg-info/top_level.txt
writing dependency_links to pygraphviz.egg-info/dependency_links.txt
writing manifest file 'pygraphviz.egg-info/SOURCES.txt'
warning: manifest_maker: standard file '-c' not found
reading manifest file 'pygraphviz.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*~' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '.svn' found anywhere in distribution
no previously-included directories found matching 'doc/build'
writing manifest file 'pygraphviz.egg-info/SOURCES.txt'
copying pygraphviz/graphviz.i -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz
copying pygraphviz/graphviz_wrap.c -> build/lib.macosx-10.9-x86_64-2.7/pygraphviz
running build_ext
building 'pygraphviz._graphviz' extension
creating build/temp.macosx-10.9-x86_64-2.7
creating build/temp.macosx-10.9-x86_64-2.7/pygraphviz
/usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/local/include/graphviz -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c pygraphviz/graphviz_wrap.c -o build/temp.macosx-10.9-x86_64-2.7/pygraphviz/graphviz_wrap.o
pygraphviz/graphviz_wrap.c:2987:10: fatal error: 'graphviz/cgraph.h' file not found
#include "graphviz/cgraph.h"
^
1 error generated.
error: command '/usr/bin/clang' failed with exit status 1
----------------------------------------
Command "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -u -c "import setuptools, tokenize;__file__='/tmp/pip-rMp2aK-build/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-CrnqPI-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-rMp2aK-build/
Graphviz was installed with the help of MacPorts. It's path is clear in the above result
include_dirs=/opt/local/include/graphviz
library_dirs=/opt/local/lib
The graphviz/cgraph.h is also present. So what's going wrong with the installation.
I tried everything in the net, but nothing seems to work. Here is a full list of what I tried.
Installing from git:
sudo pip install git+git://github.com/pygraphviz/pygraphviz.git
Installing from setup.py from package source:
sudo python setup.py install
Installing with include and library paths along win command line:
sudo python setup.py install --include-path=/opt/local/include/graphviz --library-path=/opt/local/lib/graphviz
Each one of them throws the same error.
What should I do?
Try using instead: include_dirs=/opt/local/include
This works fine for me:
pip install --global-option=build_ext --global-option="-I/opt/local/include/" --global-option="-L/opt/local/lib" PyGraphviz
Reference: python pip specify a library directory and an include directory
This works fine for me:
pip install --install-option="--include-path=/usr/local/include/" --install-option="--library-path=/usr/local/lib/" pygraphviz
Reference: PyGraphvizをmacOSにインストールする
I am having following issue when installing mitmproxy through pip.
I have tried other fixed related to egg error. Here on stack overflow.
Can't install via pip because of egg_info error
pip install matplotlib fails: 'cannot build package freetype; "python setup.py egg_info" failed with error code 1'
104:bin user129856$ sudo pip install mitmproxy
The directory '/Users/alokchoudhary/Library/Caches/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
The directory '/Users/alokchoudhary/Library/Caches/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
Collecting mitmproxy
/Library/Python/2.7/site-packages/pip-7.1.0-py2.7.egg/pip/_vendor/requests/packages/urllib3/util/ssl_.py:90: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. For more information, see https://urllib3.readthedocs.org/en/latest/security.html#insecureplatformwarning.
InsecurePlatformWarning
Downloading mitmproxy-0.12.1.tar.gz (6.5MB)
100% |████████████████████████████████| 6.5MB 18kB/s
Collecting pyperclip>=1.5.8 (from mitmproxy)
Downloading pyperclip-1.5.11.zip
Collecting pyasn1>0.1.2 (from mitmproxy)
Downloading pyasn1-0.1.8.tar.gz (75kB)
100% |████████████████████████████████| 77kB 827kB/s
Collecting tornado>=4.0.2 (from mitmproxy)
Downloading tornado-4.2.tar.gz (433kB)
100% |████████████████████████████████| 434kB 260kB/s
Collecting lxml>=3.3.6 (from mitmproxy)
Downloading lxml-3.4.4.tar.gz (3.5MB)
100% |████████████████████████████████| 3.5MB 32kB/s
Collecting netlib<0.13,>=0.12 (from mitmproxy)
Downloading netlib-0.12.1.tar.gz (64kB)
100% |████████████████████████████████| 65kB 729kB/s
Complete output from command python setup.py egg_info:
warning: no files found matching 'OpenSSL/RATIONALE'
warning: no previously-included files found matching 'leakcheck'
warning: no previously-included files matching '*.py' found under directory 'leakcheck'
warning: no previously-included files matching '*.pem' found under directory 'leakcheck'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
no previously-included directories found matching 'doc/_build'
zip_safe flag not set; analyzing archive contents...
Installed /private/tmp/pip-build-wOHXdq/netlib/.eggs/pyOpenSSL-0.15.1-py2.7.egg
Searching for cffi
Reading https://pypi.python.org/simple/cffi/
Best match: cffi 1.1.2
Downloading https://pypi.python.org/packages/source/c/cffi/cffi-1.1.2.tar.gz#md5=ca6e6c45b45caa87aee9adc7c796eaea
Processing cffi-1.1.2.tar.gz
Writing /tmp/easy_install-_e2qwn/cffi-1.1.2/setup.cfg
Running cffi-1.1.2/setup.py -q bdist_egg --dist-dir /tmp/easy_install-_e2qwn/cffi-1.1.2/egg-dist-tmp-382ExN
c/_cffi_backend.c:13:10: fatal error: 'ffi.h' file not found
#include <ffi.h>
^
1 error generated.
Traceback (most recent call last):
File "<string>", line 20, in <module>
File "/private/tmp/pip-build-wOHXdq/netlib/setup.py", line 87, in <module>
"install": CFFIInstall,
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/core.py", line 112, in setup
_setup_distribution = dist = klass(attrs)
File "build/bdist.macosx-10.10-intel/egg/setuptools/dist.py", line 268, in __init__
File "build/bdist.macosx-10.10-intel/egg/setuptools/dist.py", line 313, in fetch_build_eggs
File "build/bdist.macosx-10.10-intel/egg/pkg_resources/__init__.py", line 836, in resolve
File "build/bdist.macosx-10.10-intel/egg/pkg_resources/__init__.py", line 1081, in best_match
File "build/bdist.macosx-10.10-intel/egg/pkg_resources/__init__.py", line 1093, in obtain
File "build/bdist.macosx-10.10-intel/egg/setuptools/dist.py", line 380, in fetch_build_egg
File "build/bdist.macosx-10.10-intel/egg/setuptools/command/easy_install.py", line 629, in easy_install
File "build/bdist.macosx-10.10-intel/egg/setuptools/command/easy_install.py", line 659, in install_item
File "build/bdist.macosx-10.10-intel/egg/setuptools/command/easy_install.py", line 842, in install_eggs
File "build/bdist.macosx-10.10-intel/egg/setuptools/command/easy_install.py", line 1070, in build_and_install
File "build/bdist.macosx-10.10-intel/egg/setuptools/command/easy_install.py", line 1058, in run_setup
distutils.errors.DistutilsError: Setup script exited with error: command 'cc' failed with exit status 1
----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /private/tmp/pip-build-wOHXdq/netlib
Updated after first response for libffi:
After Installing libffi, it started breaking on libxml. I found the lxml on pip.
and its break again and looking for libxml :(
104:~ user2368563$ brew install libxml
Error: No available formula for libxml
Searching formulae...
libxml++ libxml2 libxmlsec1
Searching taps...
homebrew/versions/libxml278
104:~ user2368563$ brew install libxml2
Warning: libxml2-2.9.2 already installed
104:bin user2368563$ sudo pip install lxml
The directory '/Users/alokchoudhary/Library/Caches/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
The directory '/Users/alokchoudhary/Library/Caches/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
Collecting lxml
/Library/Python/2.7/site-packages/pip-7.1.0-py2.7.egg/pip/_vendor/requests/packages/urllib3/util/ssl_.py:90: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. For more information, see https://urllib3.readthedocs.org/en/latest/security.html#insecureplatformwarning.
InsecurePlatformWarning
Downloading lxml-3.4.4.tar.gz (3.5MB)
100% |████████████████████████████████| 3.5MB 116kB/s
Installing collected packages: lxml
Running setup.py install for lxml
Complete output from command /usr/bin/python -c "import setuptools, tokenize;__file__='/private/tmp/pip-build-bDtXaT/lxml/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-gmvCN9-record/install-record.txt --single-version-externally-managed --compile:
/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'bugtrack_url'
warnings.warn(msg)
Building lxml version 3.4.4.
Building without Cython.
Using build configuration of libxslt 1.1.28
running install
running build
running build_py
creating build
creating build/lib.macosx-10.10-intel-2.7
creating build/lib.macosx-10.10-intel-2.7/lxml
copying src/lxml/__init__.py -> build/lib.macosx-10.10-intel-2.7/lxml
copying src/lxml/_elementpath.py -> build/lib.macosx-10.10-intel-2.7/lxml
copying src/lxml/builder.py -> build/lib.macosx-10.10-intel-2.7/lxml
copying src/lxml/cssselect.py -> build/lib.macosx-10.10-intel-2.7/lxml
copying src/lxml/doctestcompare.py -> build/lib.macosx-10.10-intel-2.7/lxml
copying src/lxml/ElementInclude.py -> build/lib.macosx-10.10-intel-2.7/lxml
copying src/lxml/pyclasslookup.py -> build/lib.macosx-10.10-intel-2.7/lxml
copying src/lxml/sax.py -> build/lib.macosx-10.10-intel-2.7/lxml
copying src/lxml/usedoctest.py -> build/lib.macosx-10.10-intel-2.7/lxml
creating build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/__init__.py -> build/lib.macosx-10.10-intel-2.7/lxml/includes
creating build/lib.macosx-10.10-intel-2.7/lxml/html
copying src/lxml/html/__init__.py -> build/lib.macosx-10.10-intel-2.7/lxml/html
copying src/lxml/html/_diffcommand.py -> build/lib.macosx-10.10-intel-2.7/lxml/html
copying src/lxml/html/_html5builder.py -> build/lib.macosx-10.10-intel-2.7/lxml/html
copying src/lxml/html/_setmixin.py -> build/lib.macosx-10.10-intel-2.7/lxml/html
copying src/lxml/html/builder.py -> build/lib.macosx-10.10-intel-2.7/lxml/html
copying src/lxml/html/clean.py -> build/lib.macosx-10.10-intel-2.7/lxml/html
copying src/lxml/html/defs.py -> build/lib.macosx-10.10-intel-2.7/lxml/html
copying src/lxml/html/diff.py -> build/lib.macosx-10.10-intel-2.7/lxml/html
copying src/lxml/html/ElementSoup.py -> build/lib.macosx-10.10-intel-2.7/lxml/html
copying src/lxml/html/formfill.py -> build/lib.macosx-10.10-intel-2.7/lxml/html
copying src/lxml/html/html5parser.py -> build/lib.macosx-10.10-intel-2.7/lxml/html
copying src/lxml/html/soupparser.py -> build/lib.macosx-10.10-intel-2.7/lxml/html
copying src/lxml/html/usedoctest.py -> build/lib.macosx-10.10-intel-2.7/lxml/html
creating build/lib.macosx-10.10-intel-2.7/lxml/isoschematron
copying src/lxml/isoschematron/__init__.py -> build/lib.macosx-10.10-intel-2.7/lxml/isoschematron
copying src/lxml/lxml.etree.h -> build/lib.macosx-10.10-intel-2.7/lxml
copying src/lxml/lxml.etree_api.h -> build/lib.macosx-10.10-intel-2.7/lxml
copying src/lxml/includes/c14n.pxd -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/config.pxd -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/dtdvalid.pxd -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/etreepublic.pxd -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/htmlparser.pxd -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/relaxng.pxd -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/schematron.pxd -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/tree.pxd -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/uri.pxd -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/xinclude.pxd -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/xmlerror.pxd -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/xmlparser.pxd -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/xmlschema.pxd -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/xpath.pxd -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/xslt.pxd -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/etree_defs.h -> build/lib.macosx-10.10-intel-2.7/lxml/includes
copying src/lxml/includes/lxml-version.h -> build/lib.macosx-10.10-intel-2.7/lxml/includes
creating build/lib.macosx-10.10-intel-2.7/lxml/isoschematron/resources
creating build/lib.macosx-10.10-intel-2.7/lxml/isoschematron/resources/rng
copying src/lxml/isoschematron/resources/rng/iso-schematron.rng -> build/lib.macosx-10.10-intel-2.7/lxml/isoschematron/resources/rng
creating build/lib.macosx-10.10-intel-2.7/lxml/isoschematron/resources/xsl
copying src/lxml/isoschematron/resources/xsl/RNG2Schtrn.xsl -> build/lib.macosx-10.10-intel-2.7/lxml/isoschematron/resources/xsl
copying src/lxml/isoschematron/resources/xsl/XSD2Schtrn.xsl -> build/lib.macosx-10.10-intel-2.7/lxml/isoschematron/resources/xsl
creating build/lib.macosx-10.10-intel-2.7/lxml/isoschematron/resources/xsl/iso-schematron-xslt1
copying src/lxml/isoschematron/resources/xsl/iso-schematron-xslt1/iso_abstract_expand.xsl -> build/lib.macosx-10.10-intel-2.7/lxml/isoschematron/resources/xsl/iso-schematron-xslt1
copying src/lxml/isoschematron/resources/xsl/iso-schematron-xslt1/iso_dsdl_include.xsl -> build/lib.macosx-10.10-intel-2.7/lxml/isoschematron/resources/xsl/iso-schematron-xslt1
copying src/lxml/isoschematron/resources/xsl/iso-schematron-xslt1/iso_schematron_message.xsl -> build/lib.macosx-10.10-intel-2.7/lxml/isoschematron/resources/xsl/iso-schematron-xslt1
copying src/lxml/isoschematron/resources/xsl/iso-schematron-xslt1/iso_schematron_skeleton_for_xslt1.xsl -> build/lib.macosx-10.10-intel-2.7/lxml/isoschematron/resources/xsl/iso-schematron-xslt1
copying src/lxml/isoschematron/resources/xsl/iso-schematron-xslt1/iso_svrl_for_xslt1.xsl -> build/lib.macosx-10.10-intel-2.7/lxml/isoschematron/resources/xsl/iso-schematron-xslt1
copying src/lxml/isoschematron/resources/xsl/iso-schematron-xslt1/readme.txt -> build/lib.macosx-10.10-intel-2.7/lxml/isoschematron/resources/xsl/iso-schematron-xslt1
running build_ext
building 'lxml.etree' extension
creating build/temp.macosx-10.10-intel-2.7
creating build/temp.macosx-10.10-intel-2.7/src
creating build/temp.macosx-10.10-intel-2.7/src/lxml
cc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -arch i386 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch i386 -pipe -I/usr/include/libxml2 -I/private/tmp/pip-build-bDtXaT/lxml/src/lxml/includes -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c src/lxml/lxml.etree.c -o build/temp.macosx-10.10-intel-2.7/src/lxml/lxml.etree.o -w -flat_namespace
In file included from src/lxml/lxml.etree.c:239:
/private/tmp/pip-build-bDtXaT/lxml/src/lxml/includes/etree_defs.h:14:10: fatal error: 'libxml/xmlversion.h' file not found
#include "libxml/xmlversion.h"
^
1 error generated.
error: command 'cc' failed with exit status 1
----------------------------------------
Command "/usr/bin/python -c "import setuptools, tokenize;__file__='/private/tmp/pip-build-bDtXaT/lxml/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-gmvCN9-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/tmp/pip-build-bDtXaT/lxml
If you read through your log carefully you might spot this line:
c/_cffi_backend.c:13:10: fatal error: 'ffi.h' file not found
The "fatal error" part is especially important. :)
This means that the ffi headers couldn't be located by your compiler. I'm not sure how to do it since I'm not a Mac user but maybe homebrew could help you, or Google. To me it seems like you should install homebrew and then just run:
brew install libffi
Then try pip again.
Edit
The full list of dependencies are:
python
libffi
libssl
libxml2
libxslt1
So you'll need all those, and their headers, if you want to continue down this path.
An easier solution is to download pre-built binaries for your Mac, from mitmproxy.org (OSX Mountain Lion and later). I found this info in the installation docs.