Related
My dataset is similar to the below:
data = [['Jane', 10,10.5,11,45,66,21,88,99,77,41,22], ['John',11,22,55,34,44,22,44,55,88,56,47],['Tom',23,32,43,12,11,44,77,85,99,45,63]]
df = pd.DataFrame(data, columns = ['Name', '09-Aug-21', 'Aug-21', '02-Sep-21', 'Sep-21', '18-Oct-21', 'Oct-21', '02-Nov-21','Nov-21','14-Dec-21', 'Dec-21', '15-Jan-22'])
df
How can I add columns to this which show the quarterly figure, which is an average of the preceding three months? Eg, suppose we started at adding a column after 'Dec-21' called Q4 2021 which took the average of the columns called 'Oct-21', 'Nov-21' and 'Dec-21'.
Will I need to create a function which takes the preceding three values and returns an average, and then concatenate this to my dataframe? It does not have to be directly after each period, eg I am also happy to add all of the Quarterly averages right at the end.
from datetime import datetime
def get_quarter_name(timestamp):
"""Convert '2021-12-01' to 'Q4-2021'
"""
return f"Q{timestamp.quarter}-{timestamp.year}"
# your data
data = [['Jane', 10,10.5,11,45,66,21,88,99,77,41,22], ['John',11,22,55,34,44,22,44,55,88,56,47],['Tom',23,32,43,12,11,44,77,85,99,45,63]]
df = pd.DataFrame(data, columns = ['Name', '09-Aug-21', 'Aug-21', '02-Sep-21', 'Sep-21', '18-Oct-21', 'Oct-21', '02-Nov-21','Nov-21','14-Dec-21', 'Dec-21', '15-Jan-22'])
# filter only relevant columns, which start with an alphabetical character
cols = [col for col in df.columns if not col[0].isdigit()]
# extract only relevant columns and transpose
df_T = df[cols].set_index("Name").T
# convert index values to dates
df_T.index = pd.Index([pd.Timestamp(datetime.strptime(d,'%b-%y').strftime('%Y-%m-%d')) for d in df_T.index])
# resample by Quarters and transpose again to original format
df_quarter = df_T.resample("Q").mean().T
# rename columns to quarter-like descriptions
df_quarter.columns = [get_quarter_name(col) for col in df_quarter.columns]
df_quarter is your final answer which you can merge back to original df
Output:
Q3-2021 Q4-2021
Name
Jane 27.75 53.666667
John 28.00 44.333333
Tom 22.00 58.000000
here is one way to do it
# Define your quarters month
q1=['Aug','Sep']
q2=['Oct','Nov']
q3=['Dec','Jan']
df['q1']=df[df.columns[(df.columns.str.contains(rf'|'.join(q1)) )]].mean(axis=1)
df['q2']=df[df.columns[(df.columns.str.contains(rf'|'.join(q2)) )]].mean(axis=1)
df['q3']=df[df.columns[(df.columns.str.contains(rf'|'.join(q3)) )]].mean(axis=1)
df
Name 09-Aug-21 Aug-21 02-Sep-21 Sep-21 18-Oct-21 Oct-21 02-Nov-21 Nov-21 14-Dec-21 Dec-21 15-Jan-22 q1 q2 q3
0 Jane 10 10.5 11 45 66 21 88 99 77 41 22 19.125 68.50 46.666667
1 John 11 22.0 55 34 44 22 44 55 88 56 47 30.500 41.25 63.666667
2 Tom 23 32.0 43 12 11 44 77 85 99 45 63 27.500 54.25 69.000000
This is kinda messy, but it SHOULD allow you to dynamically generate a column for each quarter (does not have the quarter year you could add that logic if you want).
data = [['Jane', 10,10.5,11,45,66,21,88,99,77,41,22], ['John',11,22,55,34,44,22,44,55,88,56,47],['Tom',23,32,43,12,11,44,77,85,99,45,63]]
df = pd.DataFrame(data, columns = ['Name', '09-Aug-21', 'Aug-21', '02-Sep-21', 'Sep-21', '18-Oct-21', 'Oct-21', '02-Nov-21','Nov-21','14-Dec-21', 'Dec-21', '15-Jan-22'])
columns_to_use = [column for column in df.columns if column[0].isalpha()]
df = df[columns_to_use]
df = df.melt(id_vars = 'Name')
df['variable'] = '01-' + df['variable']
df['variable'] = pd.to_datetime(df['variable'],infer_datetime_format=True)
df['Quarter'] = df['variable'].dt.quarter
df['Quarter_Avg'] = df.groupby(['Name', 'Quarter'])['value'].transform('mean')
df1 = df.groupby(['Name', 'Quarter'])['Quarter_Avg'].agg('mean').reset_index()
df1['Quarter'] = 'Quarter ' + df1['Quarter'].astype(str)
df1 = df1.pivot_table(index = 'Name', columns = 'Quarter', values = 'Quarter_Avg').reset_index()
df['variable'] = df['variable'].astype(str)
df['variable'] = df['variable'].apply(lambda x : '-'.join(x.split('-')[0:2]))
df = df.pivot_table(index = 'Name', columns = 'variable', values = 'value').reset_index()
df_final = df.merge(df1, on = 'Name')
df_final
A fair amount of steps but it gives you the expected result
from datetime import datetime
data = [['Jane', 10,10.5,11,45,66,21,88,99,77,41,22,22], ['John',11,22,55,34,44,22,44,55,88,56,47,47],['Tom',23,32,43,12,11,44,77,85,99,45,63,63]]
df = pd.DataFrame(data, columns = ['Name', '09-Aug-21', 'Aug-21', '02-Sep-21', 'Sep-21', '18-Oct-21', 'Oct-21', '02-Nov-21','Nov-21','14-Dec-21', 'Dec-21', '15-Jan-22', 'Jan-22'])
# Melt the data frame by date
meltedDF = df.melt(id_vars=["Name"], var_name=["Date"])
# Remove the dates that don't match the "Month-year" format
meltedDF = meltedDF[pd.to_datetime(meltedDF.Date, format='%b-%y', errors='coerce').notna()].reset_index(drop=True)
# Convert those dates to datetime objects
meltedDF["Date"] = pd.to_datetime(meltedDF.Date, format='%b-%y')
# Find the quarter that those dates fall into and add the year string to the that quarter
meltedDF["Quarter"] = "Q" + meltedDF.Date.dt.quarter.astype(str) + " " + meltedDF.Date.dt.year.astype(str)
# Group by the quarter and the person's name then get the mean of their values
meltedDF = meltedDF.groupby(["Quarter", "Name"], as_index=False).mean().round(1)
# Pivot the table's Quarter values to be column names
meltedDF = pd.pivot_table(meltedDF, index=['Name'], values=['value'], columns="Quarter")
# Combine the names and the Quarter total values
meltedDF = pd.concat([meltedDF.reset_index()["Name"], meltedDF.reset_index()["value"]], axis=1)
# Merge these values back into the original Dataframe
df = df.merge(meltedDF, left_on='Name', right_on='Name')
Output:
Name 09-Aug-21 Aug-21 02-Sep-21 Sep-21 18-Oct-21 Oct-21 02-Nov-21 Nov-21 14-Dec-21 Dec-21 15-Jan-22 Jan-22 Q1 2022 Q3 2021 Q4 2021
0 Jane 10 10.5 11 45 66 21 88 99 77 41 22 22 22.0 27.8 53.7
1 John 11 22.0 55 34 44 22 44 55 88 56 47 47 47.0 28.0 44.3
2 Tom 23 32.0 43 12 11 44 77 85 99 45 63 63 63.0 22.0 58.0
I have a data frame which looks like this:
student_id
session_id
reading_level_id
st_week
end_week
1
3334
3
3
3
1
3335
2
4
4
2
3335
2
2
2
2
3336
2
2
3
2
3337
2
3
3
2
3339
2
3
4
...
There are multiple session_id's, st_weeks and end_weeks for every student_id. Im trying to group the data by 'student_id' and I want to calculate the difference between the maximum(end_week) and the minimum (st_week) for each student.
Aiming for an output that would look something like this:
Student_id
Diff
1
1
2
2
....
I am relatively new to Python as well as Stack Overflow and have been trying to find an appropriate solution - any help is appreciated.
Using the data you shared, a simpler solution is possible:
Group by student_id, and pass False argument to the as_index parameter (this works for a dataframe, and returns a dataframe);
Next, use a named aggregation to get the `max week for end week and the min week for st_week for each group
Get the difference between max_wk and end_wk
Finally, keep only the required columns
(
df.groupby("student_id", as_index=False)
.agg(max_wk=("end_week", "max"), min_wk=("st_week", "min"))
.assign(Diff=lambda x: x["max_wk"] - x["min_wk"])
.loc[:, ["student_id", "Diff"]]
)
student_id Diff
0 1 1
1 2 2
There's probably a more efficient way to do this, but I broke this into separate steps for the grouping to get max and min values for each id, and then created a new column representing the difference. I used numpy's randint() function in this example because I didn't have access to a sample dataframe.
import pandas as pd
import numpy as np
# generate dataframe
df = pd.DataFrame(np.random.randint(0,100,size=(1200, 4)), columns=['student_id', 'session_id', 'st_week', 'end_week'])
# use groupby to get max and min for each student_id
max_vals = df.groupby(['student_id'], sort=False)['end_week'].max().to_frame()
min_vals = df.groupby(['student_id'], sort=False)['st_week'].min().to_frame()
# use join to put max and min back together in one dataframe
merged = min_vals.join(max_vals)
# use assign() to calculate difference as new column
merged = merged.assign(difference=lambda x: x.end_week - x.st_week).reset_index()
merged
student_id st_week end_week difference
0 40 2 99 97
1 23 5 74 69
2 78 9 93 84
3 11 1 97 96
4 97 24 88 64
... ... ... ... ...
95 54 0 96 96
96 18 0 99 99
97 8 18 97 79
98 75 21 97 76
99 33 14 93 79
You can create a custom function and apply it to a group-by over students:
def week_diff(g):
return g.end_week.max() - g.st_week.min()
df.groupby("student_id").apply(week_diff)
Result:
student_id
1 1
2 2
dtype: int64
I would like to average certain column values depending on whether a condition is met in another column. Specifically, if column 1 in the below dataframe is < 1700, I want to include the corresponding value in that row from column 51 in my average calculation. And if column 2 < 1700, I want to also include the value in that row from column 52 in my average calculation.
So, for row 0, the new calculated column for that row would be 64 (average of 65 & 63). For row 1, the average would be just 80 (column 51 value) since neither columns 2 nor 3 were less than 1700 and hence not included in the average calculation.
This is a simplified example as my actual dataframe has about 10 columns for conditions with 10 corresponding columns of values to average.
As a potential complexity, the column headers are numbers rather than traditional text labels and do not refer to the order of that column in the dataframe since I've excluded certain columns when I imported the csv file. In other words, column 51 isn't the 51st column in the dataframe.
When I run the below code I'm getting the following error:
ValueError: ("No axis named 1 for object type ",
'occurred at index 0')
Is there a more efficient way to code this and avoid this error? Thanks for your help!
import pandas as pd
import numpy as np
test_df = pd.DataFrame({1:[1600,1600,1600,1700,1800],2:[1500,2000,1400,1500,2000],
3:[2000,2000,2000,2000,2000],51:[65,80,75,80,75],52:[63,82,85,85,75],53:[83,80,75,76,78]})
test_df
1 2 3 51 52 53
0 1600 1500 2000 65 63 83
1 1600 2000 2000 80 82 80
2 1600 1400 2000 75 85 75
3 1700 1500 2000 80 85 76
4 1800 2000 2000 75 75 78
def calc_mean_based_on_conditions(row):
list_of_columns_to_average = []
for i in range(1,4):
if row[i] < 1700:
list_of_columns_to_average.append(i+50)
if not list_of_columns_to_average:
return np.nan
else:
return row[(list_of_columns_to_average)].mean(axis=1)
test_df['MeanValue'] = test_df.apply(calc_mean_based_on_conditions, axis=1)
Something very relevant (supporting int as column names)- https://github.com/theislab/anndata/issues/31
Due to this bug/issue, I converted the column names to type string:
test_df = pd.DataFrame({'1':[1600,1600,1600,1700,1800],'2':[1500,2000,1400,1500,2000],
'3':[2000,2000,2000,2000,2000],'51':[65,80,75,80,75],'52':[63,82,85,85,75],'53':
[83,80,75,76,78]})
Created a new dataframe - new_df to meet out requirements
new_df = test_df[['1', '2', '3']].where(test_df[['1','2','3']]<1700).notnull()
new_df now looks like this
1 2 3
0 True True False
1 True False False
2 True True False
3 False True False
4 False False False
Then simply rename the column and check using 'where'
new_df = new_df.rename(columns={"1": "51", "2":"52", "3":"53"})
test_df['mean_value'] = test_df[['51', '52', '53']].where(new_df).mean(axis=1)
This should give you the desired output -
1 2 3 51 52 53 mean_value
0 1600 1500 2000 65 63 83 64.0
1 1600 2000 2000 80 82 80 80.0
2 1600 1400 2000 75 85 75 80.0
3 1700 1500 2000 80 85 76 85.0
4 1800 2000 2000 75 75 78 NaN
I deleted my other answer because it was going down the wrong path. What you want to do is generate a mask of your conditional columns, then use that mask to apply a function to other columns. In this case, 1 corresponds to 51, 2 to 52, etc.
import pandas as pd
import numpy as np
test_df = pd.DataFrame({1:[1600,1600,1600,1700,1800],2:[1500,2000,1400,1500,2000],
3:[2000,2000,2000,2000,2000],51:[65,80,75,80,75],52:[63,82,85,85,75],53:[83,80,75,76,78]})
test_df
1 2 3 51 52 53
0 1600 1500 2000 65 63 83
1 1600 2000 2000 80 82 80
2 1600 1400 2000 75 85 75
3 1700 1500 2000 80 85 76
4 1800 2000 2000 75 75 78
# create dictionary to map columns to one another
l1=list(range(1,4))
l2=list(range(50,54))
d = {k:v for k,v in zip(l1,l2)}
d
{1: 51, 2: 52, 3: 53}
temp=test_df[l1] > 1700 # Subset initial dataframe, generate mask
for _, row in temp.iterrows(): #iterate through subsetted data
list_of_columns_for_mean=list() # list of columns for later computation
for k, v in d.items(): #iterate through each k:v and evaluate conditional for each row
if row[k]:
list_of_columns_for_mean.append(v)
# the rest should be pretty easy to figure out
This is not an elegant solution, but it is a solution. Unfortunately, I've run out of time to dedicate to it, but hopefully this gets you pointed in a better direction.
There is probably a better, vectorized way to do this, but you could do it without the function
import numpy as np
import pandas as pd
from collections import defaultdict
test_df = pd.DataFrame({1:[1600,1600,1600,1700,1800],2:[1500,2000,1400,1500,2000],
3:[2000,2000,2000,2000,2000],51:[65,80,75,80,75],52:[63,82,85,85,75],53:[83,80,75,76,78]})
# List of columns that you're applying the condition to
condition_cols = list(range(1,4))
# Get row and column indices where this condition is true
condition = np.where(test_df[condition_cols].lt(1700))
# make a dictionary mapping row to true columns
cond_map = defaultdict(list)
for r,c in zip(*condition):
cond_map[r].append(c)
# Get the means of true columns
means = []
for row in range(len(test_df)):
if row in cond_map:
temp = []
for col in cond_map[row]:
# Needs 51 because of Python indexing starting at zero + 50
temp.append(test_df.loc[row, col+51])
means.append(temp)
else:
# If the row has no true columns (i.e row 4)
means.append(np.nan)
test_df['Means'] = [np.mean(l) for l in means]
The issue is indexing true rows and columns in a vectorized way.
I have the following sample data frame:
id category time
43 S 8
22 I 10
15 T 350
18 L 46
I want to apply the following logic:
1) if category value equals "T" then create new column called "time_2" where "time" value is divided by 24.
2) if category value equals "L" then create new column called "time_2" where "time" value is divided by 3.5.
3) otherwise take existing "time" value from categories S or I
Below is my desired output table:
id category time time_2
43 S 8 8
22 I 10 10
15 T 350 14.58333333
18 L 46 13.14285714
I've tried using pd.np.where to get the above to work but am confused around syntax.
You can use map for rules
In [1066]: df['time_2'] = df.time / df.category.map({'T': 24, 'L': 3.5}).fillna(1)
In [1067]: df
Out[1067]:
id category time time_2
0 43 S 8 8.000000
1 22 I 10 10.000000
2 15 T 350 14.583333
3 18 L 46 13.142857
You can use np.select. This is a good alternative to nested np.where logic.
conditions = [df['category'] == 'T', df['category'] == 'L']
values = [df['time'] / 24, df['time'] / 3.5]
df['time_2'] = np.select(conditions, values, df['time'])
print(df)
id category time time_2
0 43 S 8 8.000000
1 22 I 10 10.000000
2 15 T 350 14.583333
3 18 L 46 13.142857
user_id char_id rating
100 33 3
100 44 2
100 33 1
100 44 4
111 55 5
111 44 4
111 55 5
I have a data frame formatted similarly to this one and am trying to perform calculations on the ratings after they have been grouped by user_id and char_id.
It doesn't work but I need to do something like data.groupby('user_id', 'char_id') and then calculate the moving average for each char_id for each user_id. Any help? I have several thousand user_id so I can't go through and select one at a time for the calculations.
I need to somehow iterate over the user_id column and group all the same user_ids together, and save that format so that user_ids are separate. Then I need to do the same thing, iterating over char_id for each user_id subset and saving that format so that I can finally perform calculations on the subsets of subsets of ratings. So far all my attempts have been unsuccessful. The closest I came was:
def divide_by_user(data):
for user in data['user_id']:
user_data = data.where(data['user_id'] == user)
return user_data
There's no need to do this manually, creating and summarizing subsets like this is exactly what DataFrame.groupby() is for. Create your groupby:
grouped = df.groupby(['user_id', 'char_id'])
Then you can apply a function to each subset. It sounds like you want either rolling_mean or expanding_mean, both of which are already available in pandas:
df['cum_average'] = grouped['rating'].apply(pd.expanding_mean)
# New column now contains the average rating for each subset,
# including all values that have been seen so far.
df
Out[43]:
user_id char_id rating cum_average
0 100 33 3 3
1 100 44 2 2
2 100 33 1 2
3 100 44 4 3
4 111 55 5 5
5 111 44 4 4
6 111 55 5 5
Using a larger randomly-generated dataset to demonstrate rolling_window():
df = pd.DataFrame({
'user_id': [random.choice([100, 111, 112]) for n in range(n_rows)],
'char_id': [random.choice([33, 44, 55]) for n in range(n_rows)],
'rating': [random.choice([1, 2, 3, 4, 5]) for n in range(n_rows)]
})
grouped = df.groupby(['user_id', 'char_id'])
df['cum_average'] = grouped['rating'].apply(pd.rolling_mean, window=7)
# Output. The rolling average will be NaN until enough values have been
# observed for that subset, you can change this using the
# min_periods argument to rolling_window
df.sort(columns=['user_id', 'char_id'])
char_id rating user_id cum_average
3 33 1 100 NaN
19 33 2 100 NaN
22 33 5 100 NaN
34 33 1 100 NaN
47 33 1 100 NaN
48 33 1 100 NaN
49 33 1 100 1.714286
51 33 4 100 2.142857
55 33 2 100 2.142857
60 33 2 100 1.714286
66 33 2 100 1.857143
...
etc.
Try this:
"df" is the dataFrame
mean=pd.rolling_mean(df.rating, 7)