Related
So I'm trying to start an empty numpy array with a = np.array([]), but when i append other numpy arrays (like [1, 2, 3, 4, 5, 6, 7, 8] and [9, 10, 11, 12, 13, 14, 15, 16] to this array, then the result im basically getting is
[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16].
But what i want as result is: [[1, 2, 3, 4, 5, 6, 7, 8], [9, 10, 11, 12, 13, 14, 15, 16]]
IIUC you want to keep adding lists to your np.array. In that case, you can use something like np.vstack to "append" the new lists to the array.
a = np.array([[1, 2, 3],[4, 5, 6]])
np.vstack([a, [7, 8, 9]])
>>> array([[1, 2, 3],
[4, 5, 6],
[7, 8, 9]])
You can also use np.c_[], especially if a and b are already 1D arrays (but it also works with lists):
a = [1, 2, 3, 4, 5, 6, 7, 8]
b = [9, 10, 11, 12, 13, 14, 15, 16]
>>> np.c_[a, b]
array([[ 1, 9],
[ 2, 10],
[ 3, 11],
[ 4, 12],
[ 5, 13],
[ 6, 14],
[ 7, 15],
[ 8, 16]])
It also works "multiple times":
>>> np.c_[np.c_[a, b], a, b]
array([[ 1, 9, 1, 9],
[ 2, 10, 2, 10],
[ 3, 11, 3, 11],
[ 4, 12, 4, 12],
[ 5, 13, 5, 13],
[ 6, 14, 6, 14],
[ 7, 15, 7, 15],
[ 8, 16, 8, 16]])
I have a matrix like the following:
A = array([[12, 6, 14, 8, 4, 1],
[18, 13, 8, 10, 9, 19],
[ 8, 15, 6, 5, 6, 18],
[ 3, 0, 2, 14, 13, 12],
[ 4, 4, 5, 19, 0, 14],
[16, 8, 7, 7, 11, 0],
[ 3, 11, 2, 19, 11, 5],
[ 4, 2, 1, 9, 12, 12]])
For each cell I want to select the values in a radius of k=2 closest cells.
For instance if I select the A[3,4] I would like a submatrix like the following
array([[18, 13, 8, 10, 9],
[ 8, 15, 6, 5, 6],
[ 3, 0, 2, 14, 13],
[ 4, 4, 5, 19, 0],
[16, 8, 7, 7, 11]])
I defined the following function
def queen_neighbourhood(Adj, in_row, in_col, k):
j=k
k+=1
neighbourhood = Adj[in_row-j:in_row+k, in_col-j:in_col+k]
return neighbourhood
such as queen_neighbourhood(A, 3, 2, 2) returns
array([[18, 13, 8, 10, 9],
[ 8, 15, 6, 5, 6],
[ 3, 0, 2, 14, 13],
[ 4, 4, 5, 19, 0],
[16, 8, 7, 7, 11]])
However it does not work in borders.
For instance, for the cell [0,0] I would like to have
array([[12, 6, 14],
[18, 13, 8],
[ 8, 15, 16])
but it returns queen_neighbourhood(A, 0, 0, 2)
array([], shape=(0, 0), dtype=int64)
You could avoid negative indices:
neighbourhood = Adj[max(in_row-j, 0) : in_row+k,
max(in_col-j, 0) : in_col+k]
Adding to the previous answer; taking into consideration the extreme values
def queen_neighbourhood(Adj, in_row, in_col, k):
j=k
k+=1
neighbourhood = Adj[max(in_row-j, 0) : min(in_row+k,Adj.shape[0]),
max(in_col-j, 0) : min(in_col+k,Adj.shape[1])]
return(neighbourhood)
You can use numpy roll to ensure you are always dealing with the middle value,
import numpy as np
def queen_neighbourhood(Adj, in_row, in_col, k):
j=k
k+=1
midrow = int(Adj.shape[0]/2.)+1
midcol = int(Adj.shape[1]/2.)+1
Ashift = np.roll(Adj,(in_row-midrow,in_col-midcol),(0,1))
neighbourhood = Ashift[1:k+1, 1:k+1]
return neighbourhood
A = np.array([[18, 13, 8, 10, 9],
[ 8, 15, 6, 5, 6],
[ 3, 0, 2, 14, 13],
[ 4, 4, 5, 19, 0],
[16, 8, 7, 7, 11]])
print(A)
An = queen_neighbourhood(A, 0, 0, 2)
print(An)
which gives,
[[11 16 8]
[ 9 18 13]
[ 6 8 15]]
I thought I understood the reshape function in Numpy until I was messing around with it and came across this example:
a = np.arange(16).reshape((4,4))
which returns:
array([[ 0, 1, 2, 3],
[ 4, 5, 6, 7],
[ 8, 9, 10, 11],
[12, 13, 14, 15]])
This makes sense to me, but then when I do:
a.reshape((2,8), order = 'F')
it returns:
array([[0, 8, 1, 9, 2, 10, 3, 11],
[4, 12, 5, 13, 6, 14, 7, 15]])
I would expect it to return:
array([[0, 4, 8, 12, 1, 5, 9, 13],
[2, 6, 10, 14, 3, 7, 11, 15]])
Can someone please explain what is happening here?
The elements of a in order 'F'
array([[ 0, 1, 2, 3],
[ 4, 5, 6, 7],
[ 8, 9, 10, 11],
[12, 13, 14, 15]])
are [0,4,8,12,1,5,9 ...]
Now rearrange them in a (2,8) array.
I think the reshape docs talks about raveling the elements, and then reshaping them. Evidently the ravel is done first.
Experiment with a.ravel(order='F').reshape(2,8).
Oops, I get what you expected:
In [208]: a = np.arange(16).reshape(4,4)
In [209]: a
Out[209]:
array([[ 0, 1, 2, 3],
[ 4, 5, 6, 7],
[ 8, 9, 10, 11],
[12, 13, 14, 15]])
In [210]: a.ravel(order='F')
Out[210]: array([ 0, 4, 8, 12, 1, 5, 9, 13, 2, 6, 10, 14, 3, 7, 11, 15])
In [211]: _.reshape(2,8)
Out[211]:
array([[ 0, 4, 8, 12, 1, 5, 9, 13],
[ 2, 6, 10, 14, 3, 7, 11, 15]])
OK, I have to keep the 'F' order during the reshape
In [214]: a.ravel(order='F').reshape(2,8, order='F')
Out[214]:
array([[ 0, 8, 1, 9, 2, 10, 3, 11],
[ 4, 12, 5, 13, 6, 14, 7, 15]])
In [215]: a.ravel(order='F').reshape(2,8).flags
Out[215]:
C_CONTIGUOUS : True
F_CONTIGUOUS : False
...
In [216]: a.ravel(order='F').reshape(2,8, order='F').flags
Out[216]:
C_CONTIGUOUS : False
F_CONTIGUOUS : True
From np.reshape docs
You can think of reshaping as first raveling the array (using the given
index order), then inserting the elements from the raveled array into the
new array using the same kind of index ordering as was used for the
raveling.
The notes on order are fairly long, so it's not surprising that the topic is confusing.
Given a matrix A with dimensions axa, and B with dimensions bxb, and axa modulo bxb == 0. B is a submatrix(s) of A starting at (0,0) and tiled until the dimensions of axa is met.
A = array([[ 0, 1, 2, 3],
[ 4, 5, 6, 7],
[ 8, 9, 10, 11],
[12, 13, 14, 15]])
An example of a submatrix might be:
B = array([[10, 11],
[14, 15]])
Where the number 15 is in position (1, 1) with respect to B's coordinates.
How could I return a view on the array A, for a particular position in B? For example for position (1,1) in B, I want to get all such values from A:
C = array([[5, 7],
[13, 15]])
The reason I want a view, is that I wish to update multiple positions in A:
C = array([[5, 7],[13, 15]]) = 20
results in
A = array([[ 0, 1, 2, 3],
[ 4, 20, 6, 20],
[ 8, 9, 10, 11],
[12, 20, 14, 20]])
You can obtain this as follows:
>>> A = np.array([[ 0, 1, 2, 3],
[ 4, 5, 6, 7],
[ 8, 9, 10, 11],
[12, 13, 14, 15]])
>>> A[np.ix_([1,3],[1,3])] = 20
>>> A
array([[ 0, 1, 2, 3],
[ 4, 20, 6, 20],
[ 8, 9, 10, 11],
[12, 20, 14, 20]])
For more info about np.ix_ could review the NumPy documentation
I am wondering if there is a way it index/slice a numpy array, such that one can get every other band of 2 elements. In other words, given:
test = np.array([[1,2,3,4,5,6,7,8],[9,10,11,12,13,14,15,16]])
I would like to get the array:
[[1, 2, 5, 6],
[9, 10, 13, 14]]
Thoughts on how this can be accomplished with slicing/indexing?
Not that difficult with a few smart reshapes :)
test.reshape((4, 4))[:, :2].reshape((2, 4))
Given:
>>> test
array([[ 1, 2, 3, 4, 5, 6, 7, 8],
[ 9, 10, 11, 12, 13, 14, 15, 16]])
You can do:
>>> test.reshape(-1,2)[::2].reshape(-1,4)
array([[ 1, 2, 5, 6],
[ 9, 10, 13, 14]])
Which works even for different shapes of initial arrays:
>>> test2
array([ 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16])
>>> test2.reshape(-1,2)[::2].reshape(-1,4)
array([[ 1, 2, 5, 6],
[ 9, 10, 13, 14]])
>>> test3
array([[ 1, 2, 3, 4],
[ 5, 6, 7, 8],
[ 9, 10, 11, 12],
[13, 14, 15, 16]])
>>> test3.reshape(-1,2)[::2].reshape(-1,4)
array([[ 1, 2, 5, 6],
[ 9, 10, 13, 14]])
How it works:
1. Reshape into two columns by however many rows:
>>> test.reshape(-1,2)
array([[ 1, 2],
[ 3, 4],
[ 5, 6],
[ 7, 8],
[ 9, 10],
[11, 12],
[13, 14],
[15, 16]])
2. Stride the array by stepping every second element
>>> test.reshape(-1,2)[::2]
array([[ 1, 2],
[ 5, 6],
[ 9, 10],
[13, 14]])
3. Set the shape you want of 4 columns, however many rows:
>>> test.reshape(-1,2)[::2].reshape(-1,4)
array([[ 1, 2, 5, 6],
[ 9, 10, 13, 14]])