How to create files to avoid permission issues in docker? - python

I am new using docker and i have a task to create two containers: one for a django project and another for a mysql server.
I made it using Dockerfile and docker-compose.yml.
The project it's working with "docker-compose up", but i have permission problems when i try to create new files inside the container with "python manage.py startapp app_name". Basically i can't modify the files inside my ide(pycharm ubuntu). For what i can understand the user in the docker is root, so i need to have root permission to change those files but i don't want to modify them as root or change the permission of those files each time i make them.
Here is my Dockerfile:
FROM python:3.9.5
ENV PYTHONUNBUFFERED 1
WORKDIR /app
COPY requirements.txt /app/requirements.txt
RUN pip install -r requirements.txt
COPY . /app
CMD python manage.py runserver 0.0.0.0:8000
docker-compose.yml
version: "3.9"
services:
backend:
build:
context: .
dockerfile: Dockerfile
ports:
- 8000:8000
volumes:
- .:/app
depends_on:
- mysqldb
mysqldb:
image: mysql:5.7.34
restart: always
environment:
MYSQL_DATABASE: mydb
MYSQL_USER: django
MYSQL_PASSWORD: djangopass
MYSQL_ROOT_PASSWORD: mysecretpassword
volumes:
- .dbdata:/var/lib/mysql
ports:
- 3306:3306

Better not to use root user. the best way its to create a new user it give it permission as needed. copy the code to the user home directory and run the image not as root.
RUN useradd --create-home myuser
USER myuser
RUN mkdir /home/myuser/code
WORKDIR /home/myuser/code
COPY . .

Related

Dockerized Django app and MySQL with docker-compose using .env

I would to run my Django project into a Docker container with its Database on another Docker container inside a Bebian
When i run my docker container, I have some errors. Like : Lost connection to MySQL server during query ([Errno 104] Connection reset by peer).
This command mysql > SET GLOBAL log_bin_trust_function_creators = 1 is very important because database's Django user create trigger.
Morever, I use a .env file used same for create DB image to store DB user and password. This path is settings/.env.
My code:
docker-compose.yml:
version: '3.3'
services:
db:
image: mysql:8.0.29
container_name: db_mysql_container
environment:
MYSQL_DATABASE: $DB_NAME
MYSQL_USER: $DB_USER
MYSQL_PASSWORD: $DB_PASSWORD
MYSQL_ROOT_PASSWORD: $DB_ROOT_PASSWORD
command: ["--log_bin_trust_function_creators=1"]
ports:
- '3306:3306'
expose:
- '3306'
api:
build: .
container_name: django_container
command: bash -c "pip install -q -r requirements.txt &&
python manage.py migrate &&
python manage.py runserver 0.0.0.0:8000"
volumes:
- .:/app
ports:
- '8000:8000'
depends_on:
- db
Dockerfile :
# syntax=docker/dockerfile:1
FROM python:3.9.14-buster
ENV PYTHONUNBUFFERED=1
RUN mkdir /app
WORKDIR /app
COPY requirements.txt /app/
RUN pip install -r requirements.txt
ADD . /app/
How to start my Django project ? Is possible to start only the DB container ?
What command i need execute and what changes i need to make, I'm novice with Docker ! So if you help me, please explains your commands and actions !
You can find this project on my GitHub
Thank !
To run dockerized django project.
Simply you can run below command:
docker-compose run projectname bash -c "python manage.py createsuperuser"
Above command is used for to create superuser

Docker-Compose Output File To Local Host

I have the below docker-compose.yaml file that sets up a database and runs a python script
version: '3.3'
services:
db:
image: mysql:8.0
cap_add:
- SYS_NICE
restart: always
environment:
- MYSQL_DATABASE=test_db
- MYSQL_ROOT_PASSWORD=xxx
ports:
- '3310:3310'
volumes:
- db:/var/lib/mysql
py_service:
container_name: test_py
build: .
command: ./main.py -r compute_init
depends_on:
- db
ports:
- 80:80
environment:
DB_HOST: db
DB_PORT: 3306
DB_USER: root
DB_PASSWORD: xxx
DB_NAME: test_db
links:
- db
volumes:
- py_output:/app/output
volumes:
db:
driver: local
py_output:
To run it I perform the following
docker-compose build
docker-compose up
docker-compose run -v /home/ubuntu/docker_directory/output:/app/output/* py_service
Here is the Dockerfile
FROM python:3.7
RUN mkdir /app
WORKDIR /app
COPY env/requirements.txt requirements.txt
RUN pip install -r requirements.txt
COPY . .
CMD ["python3","main.py","-r","compute_init"]
Now this works fine I can see the data has been properly populated under the generated in the msql database.
The python file at the end of the script should dump a csv file to /app/ouput/output.csv (via pandas library df.to_csv("output/output.csv"))
My question is, how to recover that csv from the container to the local directory.
The script seems to finish off without any errors, but can't find the output file at the end.
it seems using docker-compose run -v $(pwd)/output:/app/output py_service
did the job

Django on Docker is starting up but browser gives empty response

For a simple app with Django, Python3, Docker on mac
Dockerfile
FROM python:3
ENV PYTHONUNBUFFERED=1
RUN mkdir /code
WORKDIR /code
COPY requirements.txt /code/
RUN python3 -m pip install -r requirements.txt
CMD python3 manage.py runserver
COPY . /code/
docker-compose.yml
version: "3.9"
services:
# DB
db:
image: mysql
restart: always
environment:
MYSQL_ROOT_PASSWORD: '****'
MYSQL_USER: '****'
MYSQL_PASSWORD: '****'
MYSQL_DATABASE: 'mydb'
ports:
- "3307:3306"
expose:
# Opens port 3306 on the container
- '3307'
volumes:
- $HOME/proj/sql/mydbdata.sql:/mydbdata.sql
# Web app
web:
build: .
command: python manage.py runserver 0.0.0.0:8000
volumes:
- .:/code
ports:
- "8000:8000"
depends_on:
- db
Also, what I wanted is to execute the SQL the first time the image is created,
after that database should be mounted.
volumes:
- $HOME/proj/sql/mydbdata.sql:/mydbdata.sql
Looks like the Docker is starting but from my browser, I get this response
localhost didn’t send any data.
ERR_EMPTY_RESPONSE
what is that I am missing. Please help
Looks like your django project is running already when you create image. Since you use command option docker-compose.yml file, you don't need CMD command in Dockerfile in this case.
I would rewrite Dockerfile and docker-compose.yml as follows:
FROM python:3
ENV PYTHONUNBUFFERED 1
RUN mkdir /code
WORKDIR /code
COPY requirements.txt /code/
RUN python3 -m pip install -r requirements.txt
COPY . /code/
version: "3.9"
services:
db:
image: mysql
restart: always
environment:
MYSQL_ROOT_PASSWORD: '****'
MYSQL_USER: '****'
MYSQL_PASSWORD: '****'
MYSQL_DATABASE: 'mydb'
ports:
- "3307:3306" # make sure django project connects to 3306 port
volumes:
- $HOME/proj/sql:/docker-entrypoint-initdb.d
web:
build: .
command: python manage.py runserver 0.0.0.0:8000
volumes:
- .:/code
ports:
- "8000:8000"
depends_on:
- db
A few things to point out.
When you run docker-compose up, you will probably see an error, because your django project will already be running even before db is initialised.
That's natural. So you need customized command or shell program to force django project to wait to try to connect db.
In my case I would use a custom command.
version: "3.9"
services:
db:
image: mysql:8
env_file:
- .env
command:
- --default-authentication-plugin=mysql_native_password
restart: always
ports:
- "3308:3306"
web:
build: .
command: >
sh -c "python manage.py wait_for_db &&
python manage.py makemigrations &&
python manage.py migrate &&
python manage.py runserver 0.0.0.0:8000"
volumes:
- .:/code
ports:
- "8001:8000"
depends_on:
- db
env_file:
- .env
Next, wait_for_db.py. This file is what I created in myapp/management/commands/wait_for_db.py. With this you postpone db connection until db is ready. This SO post has helped me a lot.
See Writing custom django-admin command for detail.
import time
from django.db import connection
from django.db.utils import OperationalError
from django.core.management.base import BaseCommand
class Command(BaseCommand):
"""Wait to connect to db until db is initialised"""
def handle(self, *args, **options):
start = time.time()
self.stdout.write('Waiting for database...')
while True:
try:
connection.ensure_connection()
break
except OperationalError:
time.sleep(1)
end = time.time()
self.stdout.write(self.style.SUCCESS(f'Database available! Time taken: {end-start:.4f} second(s)'))
Looks like you want to populate your database with sql file when your db container starts running. Mysql docker hub says
Initializing a fresh instance
When a container is started for the first time, a new database with the specified name will be created and initialized with the provided configuration variables. Furthermore, it will execute files with extensions .sh, .sql and .sql.gz that are found in /docker-entrypoint-initdb.d. Files will be executed in alphabetical order. You can easily populate your mysql services by mounting a SQL dump into that directory and provide custom images with contributed data. SQL files will be imported by default to the database specified by the MYSQL_DATABASE variable.
So your .sql file should be located in /docker-entrypoint-initdb.d in your mysql container. See this post for more.
Last but not least, your db is lost when you run docker-compose down, since you don't have volumes other than sql file. It that's not what you want, you might want to consider the following
version: "3.9"
services:
db:
...
volumes:
- data:/var/lib/mysql
...
volumes:
data:

Compose up container exited with code 0 and logs it with empty

I need to containerize a Django Web project with docker. I divided the project into dashboard, api-server and database. When I type docker-compose up, it print api-server exited with code 0 and api-server container Exited (0), and I type docker logs api-server, it return empty, but other container normal. I don't know how to check problem.
api-server directory structure is as follows
api-server
server/
Dockerfile
requirements.txt
start.sh
...
...
Some compose yml content is as follows
dashboard:
image: nginx:latest
container_name: nginx-dashboard
volumes:
- /nginx/nginx/default:/etc/nginx/conf.d/default.conf:ro
- /nginx/dist:/var/www/html:ro
ports:
- "80:80"
depends_on:
- api-server
api-server:
build: /api-server
container_name: api-server
volumes:
- /api-server:/webapps
ports:
- "8000:8000"
depends_on:
- db
db:
image: postgres
container_name: Postgres
environment:
- POSTGRES_USER=postgres
- POSTGRES_PASSWORD=postgres
- POSTGRES_DB=postgres
ports:
- "5432:5432"
Some Dockerfile content of api-server is as follows
FROM python:3.6
ENV PYTHONUNBUFFERED 1
RUN mkdir /webapps
WORKDIR /webapps
RUN apt-get clean && apt-get update && apt-get upgrade -y && apt-get install -y python3-pip libpq-dev apt-utils
COPY ./requirements.txt /webapps/
RUN pip3 install -r /webapps/requirements.txt
COPY . /webapps/
CMD ["bash","-c","./start.sh"]
start.sh is as follows
#!/usr/bin/env bash
cd server/
python manage.py runserver 0.0.0.0:8000
type docker-compose up result as follows
root#VM:/home/test/Documents/ComposeTest# docker-compose up
Creating network "composetest_default" with the default driver
Creating Postgres ... done
Creating api-server ... done
Creating dashboard ... done
Attaching to Postgres, api-server, dashboard
Postgres | The files belonging to this database system will be owned by user "postgres".
Postgres | This user must also own the server process.
...
...
api-server exited with code 0
api-server exited with code 0
docker logs api-server is empty
I would very appreciate it if you guys can tell me how to check this problems, It is better to provide a solution.
You are already copying api-server to Dockerfile during build time which should work fine, but in Docker compose it all override all the pip packages and code.
volumes:
- /api-server:/webapps
Remove the volume from your Docker compose and it should work.
Second thing set permission to the bash script.
COPY . /webapps/
RUN chmod +x ./start.sh
Third thing, you do need to run python using bash as there is no thing in the bash that CMD can not perform so why not as a CMD?
CMD ["python", "manage.py", "runserver", "0.0.0.0:8000"]

Applying changes in django/docker files

I'm new at the development with django and docker and I have a problem when I change a file in the project. My problem is as follows:
I make changes in the content of any file in the django project (Template, view, urls) but it does not update in my current running app. Always I want to see my changes I need to restart the server (I'm using nginx) doing docker-compose up.
Is there a package or a alteration that I should install/do to make it able to accept change in running time?
This is my Dockerfile:
FROM python:3.6
ENV PYTHONUNBUFFERED 1
RUN mkdir -p /opt/services/djangoapp/src
COPY Pipfile Pipfile.lock /opt/services/djangoapp/src/
WORKDIR /opt/services/djangoapp/src
RUN pip install pipenv && pipenv install --system
RUN pip install pipenv && pipenv install --system
RUN pip install django-livereload
COPY . /opt/services/djangoapp/src
RUN cd hello && python manage.py collectstatic --no-input
EXPOSE 8000
CMD ["gunicorn", "-c", "config/gunicorn/conf.py", "--bind", ":8000", "--chdir", "hello", "hello.wsgi:application"]
Let me know any other information that I might provide to give a better glimpse of the problem (if it is not clear enough).
version: '3'
services:
# database containers, one for each db
database1:
image: postgres:10
volumes:
- database1_volume:/var/lib/postgresql/data
env_file:
- config/db/database1_env
networks:
- database1_network
# web container, with django + gunicorn
djangoapp:
build: .
environment:
- DJANGO_SETTINGS_MODULE
volumes:
- .:/opt/services/djangoapp/src
- static:/opt/services/djangoapp/static
- media:/opt/services/djangoapp/media
- .:/code
networks:
- database1_network
- nginx_network
depends_on:
- database1
# reverse proxy container (nginx)
nginx:
image: nginx:1.13
ports:
- 8000:80
volumes:
- ./config/nginx/conf.d:/etc/nginx/conf.d
- static:/opt/services/djangoapp/static
- media:/opt/services/djangoapp/media
networks:
- nginx_network
depends_on:
- djangoapp
networks:
database1_network:
driver: bridge
database2_network:
driver: bridge
nginx_network:
driver: bridge
volumes:
database1_volume:
static:
media:
This is pretty simple. What happens here now
You have the Dockerfile and you COPY your current folder(at the time you build your image) to the container. So while you are running the container it DOES NOT sync with you host(current working folder) if you change something in the host after create the container.
If you want to sync your host with the container you have to mount it as volume with, either -v in single container or with volumes in docker compose.
docker run -v /host/directory:/container/directory
docker run -v ./:/opt/services/djangoapp/src
or using docker-compose if you have multiple containers
version: '3'
services:
web-service:
build: . # path to Dockerfile
image: your-image
volumes:
- /host/directory:/container/directory
#- ./:/opt/services/djangoapp/src

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