I was trying to plot multiple bar charts as subplot but the y axis keeps on getting scientific notation values. The initial code I ran was:
from matplotlib import pyplot as plt
fig, axes = plt.subplots(7,3,figsize = (25, 40)) # axes is a numpy array of pyplot Axes
axes = iter(axes.ravel())
cat_columns=['Source','Side','State','Timezone',
'Amenity', 'Bump', 'Crossing', 'Give_Way',
'Junction', 'No_Exit', 'Railway', 'Roundabout', 'Station', 'Stop',
'Traffic_Calming', 'Traffic_Signal', 'Turning_Loop', 'Sunrise_Sunset',
'Civil_Twilight', 'Nautical_Twilight', 'Astronomical_Twilight']
for col in cat_columns:
ax = df[col].value_counts().plot(kind='bar',label = col, ax=axes.__next__())
And the output looks like this:
enter image description here
fig, axes = plt.subplots(7,3,figsize = (25, 40)) # axes is a numpy array of pyplot Axes
axes = iter(axes.ravel())
cat_columns=['Source','Side','State','Timezone',
'Amenity', 'Bump', 'Crossing', 'Give_Way',
'Junction', 'No_Exit', 'Railway', 'Roundabout', 'Station', 'Stop',
'Traffic_Calming', 'Traffic_Signal', 'Turning_Loop', 'Sunrise_Sunset',
'Civil_Twilight', 'Nautical_Twilight', 'Astronomical_Twilight']
for col in cat_columns:
ax = df[col].value_counts().plot(kind='bar',label = col, ax=axes.__next__())
ax.ticklabel_format(useOffset=False, style='plain')
After using this line ax.ticklabel_format(useOffset=False, style='plain') I am getting an error like:
enter image description here
Please guide me on this error.
You can turn this off by creating a custom ScalarFormatter object and turning scientific notation off. For more details, see the matplotlib documentation pages on tick formatters and on ScalarFormatter.
# additional import statement at the top
from matplotlib import pyplot as plt
from matplotlib import ticker
# additional code for every axis
formatter = ticker.ScalarFormatter()
formatter.set_scientific(False)
ax.yaxis.set_major_formatter(formatter)
Related
In the below code I plotted a time-line chart but I don't know how can I show all Y-axis values by integer type and standard interval. Does anyone has any idea?
code link: https://colab.research.google.com/drive/1Fq91PXlylJMKh6oUpysM95gpLwBfUcGx?usp=sharing
from matplotlib.patches import Patch
import matplotlib
import matplotlib.pyplot as plt
matplotlib.rcParams.update(matplotlib.rcParamsDefault)
fig, ax = plt.subplots(1, figsize=(20,7))
ax.barh(df.year, df.days_start_to_end, left=df.startNum, color=df.color)
xticks = np.arange(0, df.endNum.max()+1, 3)
xticks_labels = pd.date_range(proj_start, end=df.end.max()).strftime("%m/%d ")
xticks_minor = np.arange(0, df.endNum.max()+1, 1)
#ax.set_yticks(np.arange(len(df.year)))
ax.set_xticks(xticks)
#ax.set_xticks(xticks_minor, minor=True)
ax.set_xticklabels(xticks_labels[::3])
c_dict = { 'Perfect': '#4db249', 'Good':'#539de3',
'Normal':'#ffbd63', 'Severe': '#ff7361', 'Drastic':'#ff2626'}
legendEl = [Patch(facecolor = c_dict[i], label = i) for i in c_dict]
plt.legend(handles = legendEl)
plt.show()
the dates (year) that you have are just numbers and not datetime. If you would like to see all the labels in Y-axis, you can simply convert that column to string while plotting. This will tell matplotlib that these are texts and need to be plotted as categorical data. Below is the updated line... Note that this will plot the years without the decimal. Hope you don't need that.
ax.barh(df.year.astype('string'), df.days_start_to_end, left=df.startNum, color=df.color)
Updated plot
I am struggling with syncing colors between [seaborn.countplot] and [pandas.DataFrame.plot] pie plot.
I found a similar question on SO, but it does not work with pie chart as it throws an error:
TypeError: pie() got an unexpected keyword argument 'color'
I searched on the documentation sites, but all I could find is that I can set a colormap and palette, which was also not in sync in the end:
Result of using the same colormap and palette
My code:
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt
import seaborn as sns
df = pd.read_csv('https://andybek.com/pandas-sat')
cat_vars = ['Borough', 'SAT Section']
for var in list(cat_vars):
fig, ax = plt.subplots(1, 2, figsize=(10, 5))
df[var].value_counts().plot(kind='pie', autopct=lambda v: f'{v:.2f}%', ax=ax[0])
cplot = sns.countplot(data=df, x=var, ax=ax[1])
for patch in cplot.patches:
cplot.annotate(
format(patch.get_height()),
(
patch.get_x() + patch.get_width() / 2,
patch.get_height()
)
)
plt.show()
Illustration of the problem
As you can see, colors are not in sync with labels.
I added the argument order to the sns.countplot(). This would change how seaborn selects the values and as a consequence the colours between both plots will mach.
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt
import seaborn as sns
df = pd.read_csv('https://andybek.com/pandas-sat')
cat_vars = ['Borough', 'SAT Section']
for var in list(cat_vars):
fig, ax = plt.subplots(1, 2, figsize=(10, 5))
df[var].value_counts().plot(kind='pie', autopct=lambda v: f'{v:.2f}%', ax=ax[0])
cplot = sns.countplot(data=df, x=var, ax=ax[1],
order=df[var].value_counts().index)
for patch in cplot.patches:
cplot.annotate(
format(patch.get_height()),
(
patch.get_x() + patch.get_width() / 2,
patch.get_height()
)
)
plt.show()
Explanation: Colors are selected by order. So, if the columns in the sns.countplot have a different order than the other plot, both plots will have different columns for the same label.
Using default colors
Using the same dataframe for the pie plot and for the seaborn plot might help. As the values are already counted for the pie plot, that same dataframe could be plotted directly as a bar plot. That way, the order of the values stays the same.
Note that seaborn by default makes the colors a bit less saturated. To get the same colors as in the pie plot, you can use saturation=1 (default is .75). To add text above the bars, the latest matplotlib versions have a new function bar_label.
import matplotlib.pyplot as plt
import seaborn as sns
import pandas as pd
df = pd.read_csv('https://andybek.com/pandas-sat')
cat_vars = ['Borough', 'SAT Section']
for var in list(cat_vars):
fig, ax = plt.subplots(1, 2, figsize=(10, 5))
counts_df = df[var].value_counts()
counts_df.plot(kind='pie', autopct=lambda v: f'{v:.2f}%', ax=ax[0])
sns.barplot(x=counts_df.index, y=counts_df.values, saturation=1, ax=ax[1])
ax[1].bar_label(ax[1].containers[0])
#Customized colors
If you want to use a customized list of colors, you can use the colors= keyword in pie() and palette= in seaborn.
To make things fit better, you can replace spaces by newlines (so "Staten Island" will use two lines). plt.tight_layout() will rearrange spacings to make titles and texts fit nicely into the figure.
I have 15 barh subplots that looks like this:
I can't seem to get the legend working, so I'll see [2,3,4] as separate labels in the graph and in the legend.
I'm having trouble with making this work for subgraphs. My code:
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt
def plot_bars_by_data(data, title):
fig, axs = plt.subplots(8,2, figsize=(20,40))
fig.suptitle(title, fontsize=20)
fig.subplots_adjust(top=0.95)
plt.rcParams.update({'font.size': 13})
axs[7,1].remove()
column_index = 0
for ax_line in axs:
for ax in ax_line:
if column_index < len(data.columns):
column_name = data.columns[column_index]
current_column_values = data[column_name].value_counts().sort_index()
ax.barh([str(i) for i in current_column_values.index], current_column_values.values)
ax.legend([str(i) for i in current_column_values.index])
ax.set_title(column_name)
column_index +=1
plt.show()
# random data
df_test = pd.DataFrame([np.random.randint(2,5,size=15) for i in range(15)], columns=list('abcdefghijlmnop'))
plot_bars_by_data(df_test, "testing")
I just get a 8x2 bars that looks like the above graph. How can I fix this?
I'm using Python 3.6 and Jupyter Python notebook.
Use the following lines in your code. I can't put the whole output here as its a large figure with lots of subplots and hence showing a particular subplot. It turns out that first you have to create a handle for your subplot and then pass the legend values and the handle to produce the desired legends.
colors = ['r', 'g', 'b']
axx = ax.barh([str(i) for i in current_column_values.index], current_column_values.values, color=colors)
ax.legend(axx, [str(i) for i in current_column_values.index])
Sample Output
I was wondering if anyone had an issue with Matplotlib's box plot fliers not showing?
I literally copy-pasted this example here into a python script:
http://blog.bharatbhole.com/creating-boxplots-with-matplotlib/
...but the box plot fliers (outliers) are not showing. Does anyone know why I might not be seeing them? Sorry if this is a silly question, but I cannot for the life of me figure out why it doesn't work.
## Create data
np.random.seed(10)
collectn_1 = np.random.normal(100, 10, 200)
collectn_2 = np.random.normal(80, 30, 200)
collectn_3 = np.random.normal(90, 20, 200)
collectn_4 = np.random.normal(70, 25, 200)
## combine these different collections into a list
data_to_plot = [collectn_1, collectn_2, collectn_3, collectn_4]
# Create a figure instance
fig = plt.figure(1, figsize=(9, 6))
# Create an axes instance
ax = fig.add_subplot(111)
# Create the boxplot
bp = ax.boxplot(data_to_plot)
I also tried adding showfliers=True to the last line of that script, but it's still not working.
This is what I get as an output:
From the look of your plot, it seems you have imported the seaborn module. There is an issue with matplotlib boxplot fliers not showing up when seaborn is imported, even when fliers are explicitly enabled. Your code seem to be working fine when seaborn is not imported:
When seaborn is imported, you could do the following:
Solution 1:
Assuming you have imported seaborn like this:
import seaborn as sns
you can use the seaborn boxplot function:
sns.boxplot(data_to_plot, ax=ax)
resulting in:
Solution 2:
In case you want to keep using the matplotlib boxplot function (from Automatic (whisker-sensitive) ylim in boxplots):
ax.boxplot(data_to_plot, sym='k.')
resulting in:
You might not see fliers if the flier marker was set to None. The page you linked to has a for flier in bp['fliers']: loop, which sets the flier marker style, color and alpha:
import numpy as np
import matplotlib.pyplot as plt
np.random.seed(10)
collectn_1 = np.random.normal(100, 10, 200)
collectn_2 = np.random.normal(80, 30, 200)
collectn_3 = np.random.normal(90, 20, 200)
collectn_4 = np.random.normal(70, 25, 200)
## combine these different collections into a list
data_to_plot = [collectn_1, collectn_2, collectn_3, collectn_4]
# Create a figure instance
fig = plt.figure(1, figsize=(9, 6))
# Create an axes instance
ax = fig.add_subplot(111)
# Create the boxplot
bp = ax.boxplot(data_to_plot, showfliers=True)
for flier in bp['fliers']:
flier.set(marker='o', color='#e7298a', alpha=0.5)
plt.show()
yields
How does one set the color of a line in matplotlib with scalar values provided at run time using a colormap (say jet)? I tried a couple of different approaches here and I think I'm stumped. values[] is a storted array of scalars. curves are a set of 1-d arrays, and labels are an array of text strings. Each of the arrays have the same length.
fig = plt.figure()
ax = fig.add_subplot(111)
jet = colors.Colormap('jet')
cNorm = colors.Normalize(vmin=0, vmax=values[-1])
scalarMap = cmx.ScalarMappable(norm=cNorm, cmap=jet)
lines = []
for idx in range(len(curves)):
line = curves[idx]
colorVal = scalarMap.to_rgba(values[idx])
retLine, = ax.plot(line, color=colorVal)
#retLine.set_color()
lines.append(retLine)
ax.legend(lines, labels, loc='upper right')
ax.grid()
plt.show()
The error you are receiving is due to how you define jet. You are creating the base class Colormap with the name 'jet', but this is very different from getting the default definition of the 'jet' colormap. This base class should never be created directly, and only the subclasses should be instantiated.
What you've found with your example is a buggy behavior in Matplotlib. There should be a clearer error message generated when this code is run.
This is an updated version of your example:
import matplotlib.pyplot as plt
import matplotlib.colors as colors
import matplotlib.cm as cmx
import numpy as np
# define some random data that emulates your indeded code:
NCURVES = 10
np.random.seed(101)
curves = [np.random.random(20) for i in range(NCURVES)]
values = range(NCURVES)
fig = plt.figure()
ax = fig.add_subplot(111)
# replace the next line
#jet = colors.Colormap('jet')
# with
jet = cm = plt.get_cmap('jet')
cNorm = colors.Normalize(vmin=0, vmax=values[-1])
scalarMap = cmx.ScalarMappable(norm=cNorm, cmap=jet)
print scalarMap.get_clim()
lines = []
for idx in range(len(curves)):
line = curves[idx]
colorVal = scalarMap.to_rgba(values[idx])
colorText = (
'color: (%4.2f,%4.2f,%4.2f)'%(colorVal[0],colorVal[1],colorVal[2])
)
retLine, = ax.plot(line,
color=colorVal,
label=colorText)
lines.append(retLine)
#added this to get the legend to work
handles,labels = ax.get_legend_handles_labels()
ax.legend(handles, labels, loc='upper right')
ax.grid()
plt.show()
Resulting in:
Using a ScalarMappable is an improvement over the approach presented in my related answer:
creating over 20 unique legend colors using matplotlib
I thought it would be beneficial to include what I consider to be a more simple method using numpy's linspace coupled with matplotlib's cm-type object. It's possible that the above solution is for an older version. I am using the python 3.4.3, matplotlib 1.4.3, and numpy 1.9.3., and my solution is as follows.
import matplotlib.pyplot as plt
from matplotlib import cm
from numpy import linspace
start = 0.0
stop = 1.0
number_of_lines= 1000
cm_subsection = linspace(start, stop, number_of_lines)
colors = [ cm.jet(x) for x in cm_subsection ]
for i, color in enumerate(colors):
plt.axhline(i, color=color)
plt.ylabel('Line Number')
plt.show()
This results in 1000 uniquely-colored lines that span the entire cm.jet colormap as pictured below. If you run this script you'll find that you can zoom in on the individual lines.
Now say I want my 1000 line colors to just span the greenish portion between lines 400 to 600. I simply change my start and stop values to 0.4 and 0.6 and this results in using only 20% of the cm.jet color map between 0.4 and 0.6.
So in a one line summary you can create a list of rgba colors from a matplotlib.cm colormap accordingly:
colors = [ cm.jet(x) for x in linspace(start, stop, number_of_lines) ]
In this case I use the commonly invoked map named jet but you can find the complete list of colormaps available in your matplotlib version by invoking:
>>> from matplotlib import cm
>>> dir(cm)
A combination of line styles, markers, and qualitative colors from matplotlib:
import itertools
import matplotlib as mpl
import matplotlib.pyplot as plt
N = 8*4+10
l_styles = ['-','--','-.',':']
m_styles = ['','.','o','^','*']
colormap = mpl.cm.Dark2.colors # Qualitative colormap
for i,(marker,linestyle,color) in zip(range(N),itertools.product(m_styles,l_styles, colormap)):
plt.plot([0,1,2],[0,2*i,2*i], color=color, linestyle=linestyle,marker=marker,label=i)
plt.legend(bbox_to_anchor=(1.05, 1), loc=2, borderaxespad=0.,ncol=4);
UPDATE: Supporting not only ListedColormap, but also LinearSegmentedColormap
import itertools
import matplotlib.pyplot as plt
Ncolors = 8
#colormap = plt.cm.Dark2# ListedColormap
colormap = plt.cm.viridis# LinearSegmentedColormap
Ncolors = min(colormap.N,Ncolors)
mapcolors = [colormap(int(x*colormap.N/Ncolors)) for x in range(Ncolors)]
N = Ncolors*4+10
l_styles = ['-','--','-.',':']
m_styles = ['','.','o','^','*']
fig,ax = plt.subplots(gridspec_kw=dict(right=0.6))
for i,(marker,linestyle,color) in zip(range(N),itertools.product(m_styles,l_styles, mapcolors)):
ax.plot([0,1,2],[0,2*i,2*i], color=color, linestyle=linestyle,marker=marker,label=i)
ax.legend(bbox_to_anchor=(1.05, 1), loc=2, borderaxespad=0.,ncol=3,prop={'size': 8})
U may do as I have written from my deleted account (ban for new posts :( there was). Its rather simple and nice looking.
Im using 3-rd one of these 3 ones usually, also I wasny checking 1 and 2 version.
from matplotlib.pyplot import cm
import numpy as np
#variable n should be number of curves to plot (I skipped this earlier thinking that it is obvious when looking at picture - sorry my bad mistake xD): n=len(array_of_curves_to_plot)
#version 1:
color=cm.rainbow(np.linspace(0,1,n))
for i,c in zip(range(n),color):
ax1.plot(x, y,c=c)
#or version 2: - faster and better:
color=iter(cm.rainbow(np.linspace(0,1,n)))
c=next(color)
plt.plot(x,y,c=c)
#or version 3:
color=iter(cm.rainbow(np.linspace(0,1,n)))
for i in range(n):
c=next(color)
ax1.plot(x, y,c=c)
example of 3:
Ship RAO of Roll vs Ikeda damping in function of Roll amplitude A44