VS Code doesn't switch between Anaconda environments correctly - python

I have:
two conda environments, myenv1 and myenv2;
two folders containing .py files: folder1 and folder2.
Let's say I've been working on folder1 in VS Code using myenv1, and then I do the following:
I close folder1 (using File -> Close Folder)
I open folder2 (using File -> Open Folder...).
I switch to env2 using the Python: Select Interpreter command.
What happens?
The blue information bar at the bottom of the VS Code window says "Python 3.8.2 64-bit ('env2': conda)" -- this suggests to me I'm now working in env2.
But I don't think the VS Code has correctly switched to env2. Why? Because if I attempt to import a package that exists in env2 but not env1 I get an error. If I import a package that exists in env1 but not env2 the import is successful.
But if I close VS Code and open it again (without doing anything else), the switch to env2 has been successful (by performing the same import test).
Is this a known bug, or am I doing something wrong? I've tried to find the issue on github without success.
Many thanks for your help.
Frank.
PS: I guess I could manually set sys.executable but I'd like to use the VS Code functionality if possible.

Related

"ERROR conda.cli.main_run:execute(33): Subprocess for 'conda run xxx' " in 1.65.00 VSCode

Today I run my python(.py) file as usual,but the terminal shows a new problem which I cannot solve for a long time.
Explicitly,I used to click Run Python File,
but the terminal shows that like this:
I then tried another two ways to run my python,such as "run code"(code runner provides),debug(python plugin together with "run python file"),and it shows that:
.
It is obvious that except the "debug",other two both fail to run,showing "ModuleNot..."(while actually the module exists in the vir env).
All codes are easy:
print('Hello World')
import os
print(os.path.abspath(__file__))
import numpy as np
go to vscode Extensions market and search "python". right click on "Python"(published by microsoft) and click on "Install another version". select a version that previously worked for you - usually just the one back before the current one.
Faced with the same issue.Solved by adding the following line
python.terminal.activateEnvironment" : false
to the settings.json file of the visual code
In the new version of Python extension in VSCode you have to add the Path for the conda by yourself. Go to the Python extension settings and add the path for the conda.exe.
Screenshot of the needed setting
I felt so lost; what a strange error.
Yes, just install an earlier version of the vscode python extension.
I cannot understand how such a bug has been introduced into the extension.

ImportError: No module named channels.asgi [duplicate]

Python is installed in a local directory.
My directory tree looks like this:
(local directory)/site-packages/toolkit/interface.py
My code is in here:
(local directory)/site-packages/toolkit/examples/mountain.py
To run the example, I write python mountain.py, and in the code I have:
from toolkit.interface import interface
And I get the error:
Traceback (most recent call last):
File "mountain.py", line 28, in ?
from toolkit.interface import interface
ImportError: No module named toolkit.interface
I have already checked sys.path and there I have the directory /site-packages. Also, I have the file __init__.py.bin in the toolkit folder to indicate to Python that this is a package. I also have a __init__.py.bin in the examples directory.
I do not know why Python cannot find the file when it is in sys.path. Any ideas? Can it be a permissions problem? Do I need some execution permission?
Based on your comments to orip's post, I guess this is what happened:
You edited __init__.py on windows.
The windows editor added something non-printing, perhaps a carriage-return (end-of-line in Windows is CR/LF; in unix it is LF only), or perhaps a CTRL-Z (windows end-of-file).
You used WinSCP to copy the file to your unix box.
WinSCP thought: "This has something that's not basic text; I'll put a .bin extension to indicate binary data."
The missing __init__.py (now called __init__.py.bin) means python doesn't understand toolkit as a package.
You create __init__.py in the appropriate directory and everything works... ?
Does
(local directory)/site-packages/toolkit
have a __init__.py?
To make import walk through your directories every directory must have a __init__.py file.
I ran into something very similar when I did this exercise in LPTHW; I could never get Python to recognise that I had files in the directory I was calling from. But I was able to get it to work in the end. What I did, and what I recommend, is to try this:
(NOTE: From your initial post, I am assuming you are using an *NIX-based machine and are running things from the command line, so this advice is tailored to that. Since I run Ubuntu, this is what I did)
Change directory (cd) to the directory above the directory where your files are. In this case, you're trying to run the mountain.py file, and trying to call the toolkit.interface.py module, which are in separate directories. In this case, you would go to the directory that contains paths to both those files (or in other words, the closest directory that the paths of both those files share). Which in this case is the toolkit directory.
When you are in the toolkit directory, enter this line of code on your command line:
export PYTHONPATH=.
This sets your PYTHONPATH to ".", which basically means that your PYTHONPATH will now look for any called files within the directory you are currently in, (and more to the point, in the sub-directory branches of the directory you are in. So it doesn't just look in your current directory, but in all the directories that are in your current directory).
After you've set your PYTHONPATH in the step above, run your module from your current directory (the toolkit directory). Python should now find and load the modules you specified.
On *nix, also make sure that PYTHONPATH is configured correctly, especially that it has this format:
.:/usr/local/lib/python
(Mind the .: at the beginning, so that it can search on the current directory, too.)
It may also be in other locations, depending on the version:
.:/usr/lib/python
.:/usr/lib/python2.6
.:/usr/lib/python2.7 and etc.
You are reading this answer says that your __init__.py is in the right place, you have installed all the dependencies and you are still getting the ImportError.
I was facing a similar issue except that my program would run fine when ran using PyCharm but the above error when I would run it from the terminal. After digging further, I found out that PYTHONPATH didn't have the entry for the project directory. So, I set PYTHONPATH per Import statement works on PyCharm but not from terminal:
export PYTHONPATH=$PYTHONPATH:`pwd` (OR your project root directory)
There's another way to do this using sys.path as:
import sys
sys.path.insert(0,'<project directory>') OR
sys.path.append('<project directory>')
You can use insert/append based on the order in which you want your project to be searched.
Using PyCharm (part of the JetBrains suite) you need to define your script directory as Source:
Right Click > Mark Directory as > Sources Root
For me, it was something really stupid. I installed the library using pip3 install but was running my program as python program.py as opposed to python3 program.py.
I solved my own problem, and I will write a summary of the things that were wrong and the solution:
The file needs to be called exactly __init__.py. If the extension is different such as in my case .py.bin then Python cannot move through the directories and then it cannot find the modules. To edit the files you need to use a Linux editor, such as vi or nano. If you use a Windows editor this will write some hidden characters.
Another problem that was affecting it was that I had another Python version installed by the root, so if someone is working with a local installation of python, be sure that the Python installation that is running the programs is the local Python. To check this, just do which python, and see if the executable is the one that is in your local directory. If not, change the path, but be sure that the local Python directory is before than the other Python.
To mark a directory as a package you need a file named __init__.py, does this help?
an easy solution is to install the module using python -m pip install <library-name> instead of pip install <library-name>
you may use sudo in case of admin restrictions
To all those who still have this issue. I believe Pycharm gets confused with imports. For me, when i write 'from namespace import something', the previous line gets underlined in red, signaling that there is an error, but works. However ''from .namespace import something' doesn't get underlined, but also doesn't work.
Try
try:
from namespace import something
except NameError:
from .namespace import something
Yup. You need the directory to contain the __init__.py file, which is the file that initializes the package. Here, have a look at this.
The __init__.py files are required to make Python treat the directories as containing packages; this is done to prevent directories with a common name, such as string, from unintentionally hiding valid modules that occur later on the module search path. In the simplest case, __init__.py can just be an empty file, but it can also execute initialization code for the package or set the __all__ variable, described later.
If you have tried all methods provided above but failed, maybe your module has the same name as a built-in module. Or, a module with the same name existing in a folder that has a high priority in sys.path than your module's.
To debug, say your from foo.bar import baz complaints ImportError: No module named bar. Changing to import foo; print foo, which will show the path of foo. Is it what you expect?
If not, Either rename foo or use absolute imports.
You must have the file __ init__.py in the same directory where it's the file that you are importing.
You can not try to import a file that has the same name and be a file from 2 folders configured on the PYTHONPATH.
eg:
/etc/environment
PYTHONPATH=$PYTHONPATH:/opt/folder1:/opt/folder2
/opt/folder1/foo
/opt/folder2/foo
And, if you are trying to import foo file, python will not know which one you want.
from foo import ... >>> importerror: no module named foo
My two cents:
Spit:
Traceback (most recent call last):
File "bash\bash.py", line 454, in main
import bosh
File "Wrye Bash Launcher.pyw", line 63, in load_module
mod = imp.load_source(fullname,filename+ext,fp)
File "bash\bosh.py", line 69, in <module>
from game.oblivion.RecordGroups import MobWorlds, MobDials, MobICells, \
ImportError: No module named RecordGroups
This confused the hell out of me - went through posts and posts suggesting ugly syspath hacks (as you see my __init__.py were all there). Well turns out that game/oblivion.py and game/oblivion was confusing python
which spit out the rather unhelpful "No module named RecordGroups". I'd be interested in a workaround and/or links documenting this (same name) behavior -> EDIT (2017.01.24) - have a look at What If I Have a Module and a Package With The Same Name? Interestingly normally packages take precedence but apparently our launcher violates this.
EDIT (2015.01.17): I did not mention we use a custom launcher dissected here.
Fixed my issue by writing print (sys.path) and found out that python was using out of date packages despite a clean install. Deleting these made python automatically use the correct packages.
In my case, because I'm using PyCharm and PyCharm create a 'venv' for every project in project folder, but it is only a mini env of python. Although you have installed the libraries you need in Python, but in your custom project 'venv', it is not available. This is the real reason of 'ImportError: No module named xxxxxx' occurred in PyCharm.
To resolve this issue, you must add libraries to your project custom env by these steps:
In PyCharm, from menu 'File'->Settings
In Settings dialog, Project: XXXProject->Project Interpreter
Click "Add" button, it will show you 'Available Packages' dialog
Search your library, click 'Install Package'
Then, all you needed package will be installed in you project custom 'venv' folder.
Enjoy.
Linux: Imported modules are located in /usr/local/lib/python2.7/dist-packages
If you're using a module compiled in C, don't forget to chmod the .so file after sudo setup.py install.
sudo chmod 755 /usr/local/lib/python2.7/dist-packages/*.so
In my case, the problem was I was linking to debug python & boost::Python, which requires that the extension be FooLib_d.pyd, not just FooLib.pyd; renaming the file or updating CMakeLists.txt properties fixed the error.
My problem was that I added the directory with the __init__.py file to PYTHONPATH, when actually I needed to add its parent directory.
For me, running the file as a module helped.
Instead of
python myapp/app.py
using
python -m myapp.app
It's not exactly the same but it might be a better approach in some cases.
If you are using a setup script/utility (e.g. setuptools) to deploy your package, don't forget to add the respective files/modules to the installer.
When supported, use find_packages() or similar to automatically add new packages to the setup script. This will absolutely save you from a headache, especially if you put your project aside for some time and then add something later on.
import setuptools
setuptools.setup(
name="example-pkg",
version="0.0.1",
author="Example Author",
author_email="author#example.com",
description="A small example package",
packages=setuptools.find_packages(),
classifiers=[
"Programming Language :: Python :: 3",
"Operating System :: OS Independent",
],
python_requires='>=3.6',
)
(Example taken from setuptools documentation)
I had the same problem (Python 2.7 Linux), I have found the solution and i would like to share it. In my case i had the structure below:
Booklet
-> __init__.py
-> Booklet.py
-> Question.py
default
-> __init_.py
-> main.py
In 'main.py' I had tried unsuccessfully all the combinations bellow:
from Booklet import Question
from Question import Question
from Booklet.Question import Question
from Booklet.Question import *
import Booklet.Question
# and many othet various combinations ...
The solution was much more simple than I thought. I renamed the folder "Booklet" into "booklet" and that's it. Now Python can import the class Question normally by using in 'main.py' the code:
from booklet.Booklet import Booklet
from booklet.Question import Question
from booklet.Question import AnotherClass
From this I can conclude that Package-Names (folders) like 'booklet' must start from lower-case, else Python confuses it with Class names and Filenames.
Apparently, this was not your problem, but John Fouhy's answer is very good and this thread has almost anything that can cause this issue. So, this is one more thing and I hope that maybe this could help others.
In linux server try dos2unix script_name
(remove all (if there is any) pyc files with command find . -name '*.pyc' -delete)
and re run in the case if you worked on script on windows
In my case, I was using sys.path.insert() to import a local module and was getting module not found from a different library. I had to put sys.path.insert() below the imports that reported module not found. I guess the best practice is to put sys.path.insert() at the bottom of your imports.
I've found that changing the name (via GUI) of aliased folders (Mac) can cause issues with loading modules. If the original folder name is changed, remake the symbolic link. I'm unsure how prevalent this behavior may be, but it was frustrating to debug.
another cause makes this issue
file.py
#!/bin/python
from bs4 import BeautifulSoup
if your default python is pyyhon2
$ file $(which python)
/sbin/python: symbolic link to python2
file.py need python3, for this case(bs4)
you can not execute this module with python2 like this:
$ python file.py
# or
$ file.py
# or
$ file.py # if locate in $PATH
Tow way to fix this error,
# should be to make python3 as default by symlink
$ rm $(which python) && ln -s $(which python3) /usr/bin/python
# or use alias
alias python='/usr/bin.../python3'
or change shebang in file.py to
#!/usr/bin/...python3
After just suffering the same issue I found my resolution was to delete all pyc files from my project, it seems like these cached files were somehow causing this error.
Easiest way I found to do this was to navigate to my project folder in Windows explorer and searching for *.pyc, then selecting all (Ctrl+A) and deleting them (Ctrl+X).
Its possible I could have resolved my issues by just deleting the specific pyc file but I never tried this
I faced the same problem: Import error. In addition the library've been installed 100% correctly. The source of the problem was that on my PC 3 version of python (anaconda packet) have been installed). This is why the library was installed no to the right place. After that I just changed to the proper version of python in the my IDE PyCharm.
I had the same error. It was caused by somebody creating a folder in the same folder as my script, the name of which conflicted with a module I was importing from elsewhere. Instead of importing the external module, it looked inside this folder which obviously didn't contain the expected modules.

Python peek definition works in vscode, but pylint complains about being unable to import

I want to test some python files in a project before installing them. For this I entered the folder to be installed in my vscode workspace settings as follows:
"python.autoComplete.extraPaths": [
"${workspaceRoot}/lib_python/release"
]
Now I have a test file in my workspace that imports from the above mentioned folder. Suggestions work fine, it also gives me definitions while hovering with the mouse over a class name from the imported file. However, half my code is underlined in red, because pylint says it does not know the definitions and cannot import.
Question: Is there a way to also make whatever part of the python plugin by Don Jayamanne is responsible for the red underlining find the additional import folders?
So what worked for me now is to set additional paths in a .env file in the project's root folder. This file will be read by the python extension of vscode.
Example:
PYTHONPATH=./lib_python/release
In User Settings -> Extensions be sure python command is the right one. On my Mac, python refers to Python 2.x, however python3 refers to Python 3.X. I simply changed VSCode's python command to python3 and this resolved my issue.

Import own .py files in anaconda spyder

I've written my own mail.py module in spider (anaconda). I want to import this py file in other python (spider) files just by 'import mail'
I searched on the internet and couldn't find a clearly solution.
To import any python script, it should exist in the PYTHONPATH. You can check this with the following code:
import sys
print sys.path
To import your Python script:
Put both the scripts (main and the imported python script) in the
same directory.
Add the location of the file to be imported to the
sys.path.
For example, if the script is located as '/location/to/file/script.py':
import sys
sys.path.append('/location/to/file/')
import script
I had the same problem, my files were in same folder, yet it was throwing an error while importing the "to_be_imported_file.py".
I had to run the "to_be_imported_file.py" seperately before importing it to another file.
I hope it works for you too.
Searched for an answer for this question to. To use a .py file as a import module from your main folder, you need to place both files in one folder or append a path to the location. If you storage both files in one folder, then check the working directory in the upper right corner of the spyder interface. Because of the wrong working directory you will see a ModuleNotFoundError.
There are many options, e.g.
Place the mail.py file alongside the other python files (this works because the current working dir is on the PYTHONPATH.
Save a copy of mail.py in the anaconda python environment's "/lib/site-packages" folder so it will be available for any python script using that environment.
I did a slightly different solution approach that is less sophisticated. When I start my anaconda terminal it is at a C prompt. I just did a cd d:\mypython\lib in the beginning window before starting python. once I did that I could simply just import my own classes that I put in that library with "import MyClass as my" then I was off and running. It is interesting, I did 2 days of internet searching in my part time and could not find the answer either, until I asked a friend.
cd d:\mypython\lib
python
>>> import MyClass as my
>>> my1=my.MyClass()
>>> my1.doSomething()
worked for me on my anaconda / windows 10 environment python 3.6.6.
when calling any function from another file, it should be noted to not import any library inside the function
I believe the easiest solution is to place the directory containing your Python files into the Anaconda site-packages folder on your machine. I wrote an article outlining the whole process but, in short, you'll need to create a folder containing your python script and an __init__.py file. Then place that folder inside the site-packages folder in the Anaconda directory.
On Windows the site-packages directory is typically located at:
C:\Users\[your_username]\Anaconda3\Lib\site-packages\
On Mac the site-packages directory is typically located located at:
Users/[your_username]/opt/anaconda3/lib/[python3.8]/site-packages/
Notice, on Mac the Python version matters. You'll need to look for the directory that corresponds to the (base) Python version used by Anaconda. Also, anything I've placed inside of square brackets in the file paths above need to be changed according to your particular machine and Python version.
The file structure should look something like this:
~/
|__site-packages/
|__your_folder/
script.py
__init__.py
After you have the folder containing your script.py and __init__.py file moved into the site-packages subdirectory of Anaconda, you'll be able to import it from any script you run on your machine.

PyCharm error: 'No Module' when trying to import own module (python script)

I have written a module (a file my_mod.py file residing in the folder my_module).
Currently, I am working in the file cool_script.py that resides in the folder cur_proj. I have opened the folder in PyCharm using File -- open (and I assume, hence, it is a PyCharm project).
In ProjectView (CMD-7), I can see my project cur_proj (in red) and under "External Libraries" I do see my_module. In cool_script.py, I can write
from my_module import my_mod as mm
and PyCharm even makes suggestion for my_mod. So far so good.
However, when I try to run cool_script.py, PyCharm tells me
"No module named my_module"
This seems strange to me, because
A) in the terminal (OS 10.10.2), in python, I can import the module no problem -- there is a corresponding entry in the PYTHONPATH in .bashrc
B) in PyCharm -- Settings -- Project cur_proj -- Project Interpreter -- CogWheel next to python interpreter -- more -- show paths for selected interpreter icon, the paths from PYTHONPATH do appear (as I think they should)
Hence, why do I get the error when I try to run cool_script.py? -- What am I missing?
Notes:
I am not declaring a different / special python version at the top of cool_script.py
I made sure that the path to my_module is correct
I put __init__.py files (empty files) both in my_module and in cur_proj
I am not using virtualenv
Addendum 2015-Feb-25
When I go in PyCharm to Run -- Edit Configurations, for my current project, there are two options that are selected with a check mark: "Add content roots to PYTHONPATH" and "Add source roots to PYTHONPATH". When I have both unchecked, I can load my module.
So it works now -- but why?
Further questions emerged:
What are "content roots" and what are "source roots"? And why does adding something to the PYTHONPATH make it somehow break?
should I uncheck both of those options all the time (so also in the defaults, not only the project specific configurations (left panel of the Run/Debug Configurations dialog)?
If your own module is in the same path, you need mark the path as Sources Root. In the project explorer, right-click on the directory that you want import. Then select Mark Directory As and select Sources Root.
So if you go to
-> Setting -> Project:My_project -> Project Structure,
Just the directory in which the source code is available and mark it as "Sources" (You can see it on the same window). The directory with source code should turn blue. Now u can import in modules residing in same directory.
PyCharm Community/Professional 2018.2.1
I was having this problem just now and I was able to solve it in sort of a similar way that #Beatriz Fonseca and #Julie pointed out.
If you go to File -> Settings -> Project: YourProjectName -> Project Structure, you'll have a directory layout of the project you're currently working in. You'll have to go through your directories and label them as being either the Source directory for all your Source files, or as a Resource folder for files that are strictly for importing.
You'll also want to make sure that you place __init__.py files within your resource directories, or really anywhere that you want to import from, and it'll work perfectly fine.
What I tried is to source the location where my files are.
e.g. E:\git_projects\My_project\__init__.py is my location.
I went to File -> Setting -> Project:My_project -> Project Structure and added the content root to about mention place E:\git_projects\My_project
it worked for me.
Always mark as source root the directory ABOVE the import!
So if the structure is
parent_folder/src/module.py
you must put something like:
from src.module import function_inside_module
and have parent_folder marked as "source folder" in PyCharm
I was getting the error with "Add source roots to PYTHONPATH" as well. My problem was that I had two folders with the same name, like project/subproject1/thing/src and project/subproject2/thing/src and I had both of them marked as source root. When I renamed one of the "thing" folders to "thing1" (any unique name), it worked.
Maybe if PyCharm automatically adds selected source roots, it doesn't use the full path and hence mixes up folders with the same name.
my_module is a folder not a module and you can't import a folder, try moving my_mod.py to the same folder as the cool_script.py and then doimport my_mod as mm. This is because python only looks in the current directory and sys.path, and so wont find my_mod.py unless it's in the same directory
Or you can look here for an answer telling you how to import from other directories.
As to your other questions, I do not know as I do not use PyCharm.
The key confusing step that must be done is to recreate the run configuration for the source file that you're trying to execute, so that the IDE picks up the new paths.
The way that actually worked for me was to go to Run/Edit Configurations..., select the configuration for the file that you're trying to run on the left side, uncheck the "Add source roots to PYTHONPATH" box, save, and then go back and check the box and save. THEN it would work.
This can be caused when Python interpreter can't find your code. You have to mention explicitly to Python to find your code in this location.
To do so:
Go to your python console
Add sys.path.extend(['your module location']) to Python console.
In your case:
Go to your python console,
On the start, write the following code:
import sys
sys.path.extend([my module URI location])
Once you have written this statement you can run following command:
from mymodule import functions
The solution for this problem without having to Mark Directory as Source Root is to Edit Run Configurations and in Execution select the option "Redirect input from" and choose script you want to run. This works because it is then treated as if the script was run interactively in this directory. However Python will still mark the module name with an error "no module named x":
When the interpreter executes the import statement, it searches for x.py in a list of directories assembled from the following sources:
The directory from which the input script was run or the current directory if the interpreter is being run interactively
The list of directories contained in the PYTHONPATH environment variable, if it is set.
An installation-dependent list of directories configured at the time Python is installed, in my case usr/lib/python3.6 on Ubuntu.
Content roots are folders holding your project code while source roots are defined as same too. The only difference i came to understand was that the code in source roots is built before the code in the content root.
Unchecking them wouldn't affect the runtime till the point you're not making separate modules in your package which are manually connected to Django. That means if any of your files do not hold the 'from django import...' or any of the function isn't called via django, unchecking these 2 options will result in a malfunction.
Update - the problem only arises when using Virtual Environmanet, and only when controlling the project via the provided terminal. Cause the terminal still works via the default system pyhtonpath and not the virtual env. while the python django control panel works fine.
PyCharm 2021.2.4 -- March 4th, 2022
Solved it by marking the source directory as "Source". Accomplished it by
right clicking on the source directory in the Project structure on the left of the IDE. I had a code source named src/.
navigate to "Mark Directory as".
select "Source" as directory type.
In short,
src -> Mark Directory as -> Source
This can occur if you are running a python file with the same name as one of its parent directories and try to import another
e.g.
Say you have files
my_project/processing/method1/processing.py
my_project/processing/algorithms/predict.py
And in processing.py you do something like:
from my_project.processing.algorithms.predict import Predict
it will throw the error
ln -s . someProject
If you have someDirectory/someProjectDir and two files, file1.py and file2.py, and file1.py tries to import with this line
from someProjectDir import file2
It won't work, even if you have designated the someProjectDir as a source directory, and even if it shows in preferences, project, project structure menu as a content root. The only way it will work is by linking the project as show above (unix command, works in mac, not sure of use or syntax for Windows).
There seems some mechanism where Pycharm does this automatically either in checkout from version control or adding as context root, since the soft link was created by Pycharm in a dependent project. Hence, just copying the same, although the weird replication of directory is annoying and necessity is perplexing. Also in the dependency where auto created, it doesn't show as new directory under version control. Perhaps comparison of .idea files will reveal more.
try installing the missing modules using the "terminal" on pycharm
python -m pip install your-module
Pycharm 2017.1.1
Click on View->ToolBar & View->Tool Buttons
On the left pane Project would be visible, right click on it and
press Autoscroll to source
and then run your code.
This worked for me.
The answer that worked for me was indeed what OP mentions in his 2015 update: uncheck these two boxes in your Python run config:
"Add content roots to PYTHONPATH"
"Add source roots to PYTHONPATH"
I already had the run config set to use the proper venv, so PyCharm doing additional work to add things to the path was not necessary. Instead it was causing errors.

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