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Seeds segmentation in OpenCV/Python

I know that this topic has been covered before but I'm stuck.
I'm quite new and I trying to segment a seeds using Python and OpenCV
Here is my steps
And now I'm stuck on how to separate the 3 seeds in the center of the image. Then I use the distance transformation, but the result is not satisfactory (why it is hardly visible?). I don't know how to proceed further. I would like to achive something like this.
Distance transform
In more circular object dt works well but not in my case.
My code:
import cv2
from google.colab.patches import cv2_imshow
import numpy as np
img = cv2.imread('connected_seeds.jpg')
img = cv2.resize(img,(600,400))
# Gray scale
gray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY)
# Blur image
blur_img = cv2.medianBlur(gray, 7)
# Thresholding
ret, thresh = cv2.threshold(blur_img, 0, 255, cv2.THRESH_BINARY_INV+cv2.THRESH_OTSU)
# Closing
kernel = np.ones((5,5), np.uint8)
closing = cv2.morphologyEx(thresh, cv2.MORPH_CLOSE, kernel, iterations=2)
sure_bg = cv2.dilate(closing,kernel,iterations=2)
# Distance transform
dist_transform = cv2.distanceTransform(closing, cv2.DIST_L2, 5)
ret, sure_fg = cv2.threshold(dist_transform,0.5*dist_transform.max(),255,0)
here is the article I'm following:
https://learning.rc.virginia.edu/notes/opencv/

How to eliminate small irregular shaped squares and to retain only lines and curves in an image using opencv in python?

In the below image, I need to extract only the straight and curved lines and eliminate all other extra boxes as shown below. I am a newbie to OpenCV. Can someone help me with this?
Input Image :
Expected Output Image:

Not perfect but you can start thinking by doing operations in this sequence.
import cv2
import numpy as np
from skimage.morphology import skeletonize
def get_skeleton_iamge(threshold_image):
skeleton = skeletonize(threshold_image / 255)
skeleton = skeleton.astype(np.uint8)
skeleton *= 255
return skeleton
image = cv2.imread("image.png")
gray_image = cv2.cvtColor(image, cv2.COLOR_BGR2GRAY)
_, threshold_image = cv2.threshold(gray_image, 100, 255, cv2.THRESH_BINARY)
cv2.imshow("threshold_image", threshold_image)
kernel = cv2.getStructuringElement(cv2.MORPH_CROSS, (3, 3))
dilate_image = cv2.dilate(threshold_image, kernel=kernel, iterations=2)
erode_image = cv2.erode(dilate_image, kernel=kernel, iterations=1)
cv2.imshow("erode_image", erode_image)
# Sclect max contour only
contours, hierarchy = cv2.findContours(erode_image, cv2.RETR_TREE, cv2.CHAIN_APPROX_NONE)
max_cnt = max(contours, key=lambda x: cv2.arcLength(x, closed=True))
max_cnt_image = np.zeros_like(erode_image)
cv2.drawContours(max_cnt_image, [max_cnt], -1, 255, -1)
cv2.imshow("max_cnt_image", max_cnt_image)
skeleton_iamge = get_skeleton_iamge(max_cnt_image)
cv2.imshow("skeleton_iamge", skeleton_iamge)
cv2.waitKey(0)
cv2.destroyAllWindows()

Detect colorful dots in image in python?

I'm trying to detect colorful dots on a white/gray background. The dots are 3 different colors (yellow, purple, blue) of different sizes. Here is the original image:
I converted the image to HSV and found lower and upper bounds for each image then applied contour detection to find those dots. The following code detects most of the dots:
import cv2
import numpy as np
from matplotlib import pyplot as plt
img = cv2.imread('image1_1.png')
hsv = cv2.cvtColor(img, cv2.COLOR_BGR2HSV)
lower_yellow = np.array([22,25,219])
upper_yellow = np.array([25,75,225])
lower_purple = np.array([141,31,223])
upper_purple = np.array([143,83,225])
lower_blue = np.array([92,32,202])
upper_blue = np.array([96,36,208])
mask_blue = cv2.inRange(hsv, lower_blue, upper_blue)
mask_purple = cv2.inRange(hsv, lower_purple, upper_purple)
mask_yellow = cv2.inRange(hsv, lower_yellow, upper_yellow)
res_blue = cv2.bitwise_and(img,img, mask=mask_blue)
res_purple = cv2.bitwise_and(img,img, mask=mask_purple)
res_yellow = cv2.bitwise_and(img,img, mask=mask_yellow)
gray_blue = cv2.cvtColor(res_blue, cv2.COLOR_BGR2GRAY)
gray_purple = cv2.cvtColor(res_purple, cv2.COLOR_BGR2GRAY)
gray_yellow = cv2.cvtColor(res_yellow, cv2.COLOR_BGR2GRAY)
_,thresh_blue = cv2.threshold(gray_blue,10,255,cv2.THRESH_BINARY)
_,thresh_purple = cv2.threshold(gray_purple,10,255,cv2.THRESH_BINARY)
_,thresh_yellow = cv2.threshold(gray_yellow,10,255,cv2.THRESH_BINARY)
contours_blue, hierarhy1 = cv2.findContours(thresh_blue,cv2.RETR_TREE,cv2.CHAIN_APPROX_SIMPLE)
contours_purple, hierarhy2 = cv2.findContours(thresh_purple,cv2.RETR_TREE,cv2.CHAIN_APPROX_SIMPLE)
contours_yellow, hierarhy3 = cv2.findContours(thresh_yellow,cv2.RETR_TREE,cv2.CHAIN_APPROX_SIMPLE)
result = img.copy()
cv2.drawContours(result, contours_blue, -1, (0, 0, 255), 2)
cv2.drawContours(result, contours_purple, -1, (0, 0, 255), 2)
cv2.drawContours(result, contours_yellow, -1, (0, 0, 255), 2)
cv2.imwrite("_allContours.jpg", result)
Here are the detected contours:
The problem is that some of the colored dots are not detected. I understand by fine-tuning the color ranges (lower and upper) it's possible to detect more dots. But that is very time consuming and not generalizable to similar images. For example the following image looks similar to the first image above and has the same colorful dots but the background is slightly different, once I ran it through above code it was not able to detect even one of the dots. Am I on the right track? Is there a more scalable and reliable solution with less need to tune color parameters in order to solve this problem? Here is the other image I tried:

I would suggest simply using adaptiveThreshold in Python/OpenCV
import cv2
import numpy as np
# read image
img = cv2.imread("dots.png")
# convert img to grayscale
gray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY)
# do adaptive threshold on gray image
thresh = cv2.adaptiveThreshold(gray, 255, cv2.ADAPTIVE_THRESH_MEAN_C, cv2.THRESH_BINARY, 25, 6)
# write results to disk
cv2.imwrite("dots_thresh.jpg", thresh)
# display it
cv2.imshow("thresh", thresh)
cv2.waitKey(0)

Filling in Circles in OpenCV

I've been struggling with this for a while. I've been trying to figure out some sort of a way in OpenCV in Python to fill in while circles in an image that's entirely black and white.
To be clear this image has been tresholded using adaptive thresholding but now I have these rings which I'd like to be able to fill in. Ideally whatever algorithm is used to fill in circles should be able for both sets of pictures I included.
If anyone could offer any guidance in this regard I'd greatly appreciate it.
Before Algorithm:
After Algorithm:
Before Algorithm:
After Algorithm:

A simple search in Google would have given you this article, which answers exactly your question.
I adopted that solution for your input:
import cv2
import numpy as np
# Read image
im_in = cv2.imread("circles.jpg", cv2.IMREAD_GRAYSCALE)
# Threshold
th, im_th = cv2.threshold(im_in, 127, 255, cv2.THRESH_BINARY)
# Copy the thresholded image
im_floodfill = im_th.copy()
# Mask used to flood filling.
# NOTE: the size needs to be 2 pixels bigger on each side than the input image
h, w = im_th.shape[:2]
mask = np.zeros((h+2, w+2), np.uint8)
# Floodfill from point (0, 0)
cv2.floodFill(im_floodfill, mask, (0,0), 255)
# Invert floodfilled image
im_floodfill_inv = cv2.bitwise_not(im_floodfill)
# Combine the two images to get the foreground
im_out = im_th | im_floodfill_inv
# Display images.
cv2.imwrite("circles_filled.png", im_out)
Input file circles.png:
Output file circles_filled.png:

You can also fill the circles by drawing the contours.
import cv2
import numpy as np
#Run Main
if __name__ == "__main__" :
image = cv2.imread("circle.jpg", -1)
gray = cv2.cvtColor(image, cv2.COLOR_BGR2GRAY)
ret,thresh = cv2.threshold(gray, 200, 255, cv2.THRESH_BINARY)
_,contours,_ = cv2.findContours(thresh, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_NONE)
cv2.drawContours(image, contours, -1, (255,255,255), thickness=-1)
cv2.namedWindow('Image', cv2.WINDOW_NORMAL)
cv2.imshow('Image', image)
cv2.waitKey(0)
cv2.destroyAllWindows()

OpenCV MSER detect text areas - Python

I have an invoice image, and I want to detect the text on it. So I plan to use 2 steps: first is to identify the text areas, and then using OCR to recognize the text.
I am using OpenCV 3.0 in python for that. I am able to identify the text(including some non text areas) but I further want to identify text boxes from the image(also excluding the non-text areas).
My input image is:
And the output is:
I am using the below code for this:
img = cv2.imread('/home/mis/Text_Recognition/bill.jpg')
mser = cv2.MSER_create()
gray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY) #Converting to GrayScale
gray_img = img.copy()
regions = mser.detectRegions(gray, None)
hulls = [cv2.convexHull(p.reshape(-1, 1, 2)) for p in regions]
cv2.polylines(gray_img, hulls, 1, (0, 0, 255), 2)
cv2.imwrite('/home/mis/Text_Recognition/amit.jpg', gray_img) #Saving
Now, I want to identify the text boxes, and remove/unidentify any non-text areas on the invoice. I am new to OpenCV and am a beginner in Python. I am able to find some examples in MATAB example and C++ example, but If I convert them to python, it will take a lot of time for me.
Is there any example with python using OpenCV, or can anyone help me with this?

Below is the code
# Import packages
import cv2
import numpy as np
#Create MSER object
mser = cv2.MSER_create()
#Your image path i-e receipt path
img = cv2.imread('/home/rafiullah/PycharmProjects/python-ocr-master/receipts/73.jpg')
#Convert to gray scale
gray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY)
vis = img.copy()
#detect regions in gray scale image
regions, _ = mser.detectRegions(gray)
hulls = [cv2.convexHull(p.reshape(-1, 1, 2)) for p in regions]
cv2.polylines(vis, hulls, 1, (0, 255, 0))
cv2.imshow('img', vis)
cv2.waitKey(0)
mask = np.zeros((img.shape[0], img.shape[1], 1), dtype=np.uint8)
for contour in hulls:
cv2.drawContours(mask, [contour], -1, (255, 255, 255), -1)
#this is used to find only text regions, remaining are ignored
text_only = cv2.bitwise_and(img, img, mask=mask)
cv2.imshow("text only", text_only)
cv2.waitKey(0)

This is an old post, yet I'd like to contribute that if you are trying to extract all the texts out of an image, here is the code to get that text in an array.
import cv2
import numpy as np
import re
import pytesseract
from pytesseract import image_to_string
pytesseract.pytesseract.tesseract_cmd = r"C:\Program Files\Tesseract-OCR\tesseract.exe"
from PIL import Image
image_obj = Image.open("screenshot.png")
rgb = cv2.imread('screenshot.png')
small = cv2.cvtColor(rgb, cv2.COLOR_BGR2GRAY)
#threshold the image
_, bw = cv2.threshold(small, 0.0, 255.0, cv2.THRESH_BINARY_INV | cv2.THRESH_OTSU)
# get horizontal mask of large size since text are horizontal components
kernel = cv2.getStructuringElement(cv2.MORPH_RECT, (20, 1))
connected = cv2.morphologyEx(bw, cv2.MORPH_CLOSE, kernel)
# find all the contours
contours, hierarchy,=cv2.findContours(connected.copy(),cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_NONE)
#Segment the text lines
counter=0
array_of_texts=[]
for idx in range(len(contours)):
x, y, w, h = cv2.boundingRect(contours[idx])
cropped_image = image_obj.crop((x-10, y, x+w+10, y+h ))
str_store = re.sub(r'([^\s\w]|_)+', '', image_to_string(cropped_image))
array_of_texts.append(str_store)
counter+=1
print(array_of_texts)