I'm unable to install scipy on rhel 7.7 ibm linuxone vm.
my Dockerfile consists of
FROM python:3
RUN pip install pystrich
RUN pip install numpy
RUN pip install pandas
RUN pip install scipy
RUN pip install scikit-learn
Error: The command '/bin/sh -c pip install scipy' returned a non-zero code: 1
but without scipy and sklearn application was successfully building. please help through this one.
Related
I am using the below dockerfile to build an image .
FROM <custom registry>/python:alpine3.7
# Copy local code to the container image.
ENV APP_HOME app
WORKDIR $APP_HOME
COPY . .
#RUN pip install versioneer
RUN pip install Flask google-auth google-cloud-storage numpy datetime pandas sklearn
ENV PORT 8080
CMD ["python", "app_hello.py"]
When I tried to do a docker build it gave me the below error
File "setup.py", line 37, in <module>
import versioneer
ModuleNotFoundError: No module named 'versioneer'
----------------------------------------
Command "/usr/local/bin/python /usr/local/lib/python3.7/site-packages/pip/_vendor/pep517/_in_process.py get_requires_for_build_wheel /tmp/tmp8gvrvde_" failed with error code 1 in /tmp/pip-install-s551_g8p/numpy
I tried to install versioneer as well , but it did not work.
What am I missing here ?
Command "/usr/local/bin/python /usr/local/lib/python3.7/site-packages/pip/_vendor/pep517/in_process.py get_requires_for_build_wheel /tmp/tmp8gvrvde" failed with error code 1 in /tmp/pip-install-s551_g8p/numpy
The error happens when build numpy, and this indicates you need to upgrade pip to make it work:
pip install --upgrade pip
Additional, you need install compiler for build with next:
apk add build-base
With above, a sample workable Dockerfile as next:
FROM python:alpine3.7
RUN pip install --upgrade pip; apk add build-base; pip install numpy
RUN python -c "import numpy; print(numpy.__version__)"
The output：
$ docker build -t abc:1 .
Sending build context to Docker daemon 2.048kB
Step 1/3 : FROM python:alpine3.7
---> 00be2573e9f7
Step 2/3 : RUN pip install --upgrade pip; apk add build-base; pip install numpy
---> Running in bba4eed0d626
Collecting pip
Downloading https://files.pythonhosted.org/packages/8a/d7/f505e91e2cdea53cfcf51f4ac478a8cd64fb0bc1042629cedde20d9a6a9b/pip-21.2.2-py3-none-any.whl (1.6MB)
Installing collected packages: pip
Found existing installation: pip 19.0.1
Uninstalling pip-19.0.1:
Successfully uninstalled pip-19.0.1
Successfully installed pip-21.2.2
...
Collecting numpy
Downloading numpy-1.21.1.zip (10.3 MB)
...
Successfully built numpy
Installing collected packages: numpy
Successfully installed numpy-1.21.1
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
Removing intermediate container bba4eed0d626
---> 6e11968fe036
Step 3/3 : RUN python -c "import numpy; print(numpy.__version__)"
---> Running in 0f4c47db07cd
1.21.1
Removing intermediate container 0f4c47db07cd
---> f189962ad246
Successfully built f189962ad246
Successfully tagged abc:1
I am using the below dockerfile to build an image .
FROM <custom registry>/python:alpine3.7
# Copy local code to the container image.
ENV APP_HOME app
WORKDIR $APP_HOME
COPY . .
#RUN pip install versioneer
RUN pip install Flask google-auth google-cloud-storage numpy datetime pandas sklearn
ENV PORT 8080
CMD ["python", "app_hello.py"]
When I tried to do a docker build it gave me the below error
File "setup.py", line 37, in <module>
import versioneer
ModuleNotFoundError: No module named 'versioneer'
----------------------------------------
Command "/usr/local/bin/python /usr/local/lib/python3.7/site-packages/pip/_vendor/pep517/_in_process.py get_requires_for_build_wheel /tmp/tmp8gvrvde_" failed with error code 1 in /tmp/pip-install-s551_g8p/numpy
I tried to install versioneer as well , but it did not work.
What am I missing here ?
Command "/usr/local/bin/python /usr/local/lib/python3.7/site-packages/pip/_vendor/pep517/in_process.py get_requires_for_build_wheel /tmp/tmp8gvrvde" failed with error code 1 in /tmp/pip-install-s551_g8p/numpy
The error happens when build numpy, and this indicates you need to upgrade pip to make it work:
pip install --upgrade pip
Additional, you need install compiler for build with next:
apk add build-base
With above, a sample workable Dockerfile as next:
FROM python:alpine3.7
RUN pip install --upgrade pip; apk add build-base; pip install numpy
RUN python -c "import numpy; print(numpy.__version__)"
The output：
$ docker build -t abc:1 .
Sending build context to Docker daemon 2.048kB
Step 1/3 : FROM python:alpine3.7
---> 00be2573e9f7
Step 2/3 : RUN pip install --upgrade pip; apk add build-base; pip install numpy
---> Running in bba4eed0d626
Collecting pip
Downloading https://files.pythonhosted.org/packages/8a/d7/f505e91e2cdea53cfcf51f4ac478a8cd64fb0bc1042629cedde20d9a6a9b/pip-21.2.2-py3-none-any.whl (1.6MB)
Installing collected packages: pip
Found existing installation: pip 19.0.1
Uninstalling pip-19.0.1:
Successfully uninstalled pip-19.0.1
Successfully installed pip-21.2.2
...
Collecting numpy
Downloading numpy-1.21.1.zip (10.3 MB)
...
Successfully built numpy
Installing collected packages: numpy
Successfully installed numpy-1.21.1
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
Removing intermediate container bba4eed0d626
---> 6e11968fe036
Step 3/3 : RUN python -c "import numpy; print(numpy.__version__)"
---> Running in 0f4c47db07cd
1.21.1
Removing intermediate container 0f4c47db07cd
---> f189962ad246
Successfully built f189962ad246
Successfully tagged abc:1
I was trying to install OpenCV4 in a docker on jetson nano. It has jetpack 4.4 s os. The docker was successfully created and Tensorflow is running but while installing OpenCV using pip it is showing CMake error.
root#5abf405fb92d:~# pip3 install opencv-python
Collecting opencv-python
Downloading opencv-python-4.4.0.42.tar.gz (88.9 MB)
|████████████████████████████████| 88.9 MB 2.5 kB/s
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing wheel metadata ... done
Requirement already satisfied: numpy>=1.13.3 in /usr/local/lib/python3.6/dist-packages (from opencv-python) (1.18.4)
Building wheels for collected packages: opencv-python
Building wheel for opencv-python (PEP 517) ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 /usr/local/lib/python3.6/dist-packages/pip/_vendor/pep517/_in_process.py build_wheel /tmp/tmpqpzwrofy
cwd: /tmp/pip-install-93nxibky/opencv-python
Complete output (9 lines):
File "/tmp/pip-build-env-o_hualnr/overlay/lib/python3.6/site-packages/skbuild/setuptools_wrap.py", line 560, in setup
cmkr = cmaker.CMaker(cmake_executable)
File "/tmp/pip-build-env-o_hualnr/overlay/lib/python3.6/site-packages/skbuild/cmaker.py", line 95, in __init__
self.cmake_version = get_cmake_version(self.cmake_executable)
File "/tmp/pip-build-env-o_hualnr/overlay/lib/python3.6/site-packages/skbuild/cmaker.py", line 82, in get_cmake_version
"Problem with the CMake installation, aborting build. CMake executable is %s" % cmake_executable)
Traceback (most recent call last):
Problem with the CMake installation, aborting build. CMake executable is cmake
----------------------------------------
ERROR: Failed building wheel for opencv-python
Failed to build opencv-python
ERROR: Could not build wheels for opencv-python which use PEP 517 and cannot be installed directly
I had the same problem and i did this,
pip install --upgrade pip setuptools wheel
then install opencv again,
pip install opencv-python
this worked for me
If after
pip install --upgrade pip setuptools wheel
you still have the same error,
You can try to specify the older version of OpenCV to install.
Ex.
pip3 install opencv-python==3.4.13.47
Yes .. Finally found a work around.
Follow this https://github.com/mdegans/nano_build_opencv and build from source and finally gets installed.
PS: It may take a bit long for building, for me it took 10 Hrs :P.
Happy Image-Processing..
I had a similar problem and what solved it for me was not to use python:3-alpine but python:3.8-slim. E.g.:
FROM python:3.8-slim
WORKDIR /usr/src/app
RUN apt update
RUN apt -y install build-essential libwrap0-dev libssl-dev libc-ares-dev uuid-dev xsltproc
RUN apt-get update -qq \
&& apt-get install --no-install-recommends --yes \
build-essential \
gcc \
python3-dev \
mosquitto \
mosquitto-clients
RUN pip3 install --upgrade pip setuptools wheel
RUN python3 -m pip install --no-cache-dir \
numpy scipy matplotlib scikit-build opencv-contrib-python-headless \
influxdb paho-mqtt configparser Pillow \
qrcode
worked finally for me.
please check your python specifications:
- opencv -> python[
version='
>=2.7,<2.8.0a0
>=3.5,<3.6.0a0
>=3.6,<3.7.0a0
>=3.7,<3.8.0a0']
I handled it by reinstalling python3 from scratch in my MacBook:
brew reinstall python#3.9
I also reinstalled numpy and matplotlib packages experimentally.
pip3 install numpy
pip3 install matplotlib
pip3 install opencv-contrib-python
The versions:
macOS Mojave 10.14.5
Python 3.9.7
OpenCV 4.5.3
OpenCV's version is 4.5.3 by this way:
import cv2
print(cv2.__version__)
But by "pip list", it shows "opencv-contrib-python 3.4.9.31".
if you are trying to install opencv in your raspberrypi 3B, Use following steps:
sudo raspi-config
advanced -- expand filesystem
reboot your pi
Open your raspi terminal and do following stuff:
use command: sudo apt-get update
use command: sudo apt-get upgrade
check your python version and upgarde it to latest one
install pip and upgrade pip
use command: mkdir project
use command: cd project
create virtual environment
activate virtual environment
install dependencies ,can get dependencies from https://singleboardbytes.com/647/install-opencv-raspberry-pi-4.htm
if error in installing libdhf5-dev
use command: sudo apt-get install python3-h5py and reinstall libdhf5-dev
use command: pip install scikit-build
use command: pip install cython
before installing opencv ,make sure you are in virtual environment or
activate environment
use command: pip install --no-cache-dir opencv-contrib-python==4.5.3.56
Remember to use mentioned version...
Thank You...
I came across similiar situation
I had error
Failed to build opencv-python ERROR: Could not build wheels for
opencv-python which use PEP 517 and cannot be installed directly
WARNING: You are using pip version 19.2.3, however version 22.0.4 is
available. You should consider upgrading via the 'python -m pip
install --upgrade pip' command.
I ran in command prompt with admin privileges following
python -m pip install --upgrade pip
Now "pip install opencv-python" works
I want to install the Python package causallift, but the installation lingers at 'Installing build dependencies...'.
When I install with:
pip3 install causallift
The installation stays at 'Installing build dependencies' for hours.
you can try 2 more options:
run: pip3 install git+https://github.com/Minyus/causallift.git
clone the GitHub repository, cd into the downloaded repository, and run: python setup.py install
It is possible to install NumPy with pip using pip install numpy.
Is there a similar possibility with SciPy? (Doing pip install scipy does not work.)
Update
The package SciPy is now available to be installed with pip!
Prerequisite:
sudo apt-get install build-essential gfortran libatlas-base-dev python-pip python-dev
sudo pip install --upgrade pip
Actual packages:
sudo pip install numpy
sudo pip install scipy
Optional packages:
sudo pip install matplotlib OR sudo apt-get install python-matplotlib
sudo pip install -U scikit-learn
sudo pip install pandas
src
An attempt to easy_install indicates a problem with their listing in the Python Package Index, which pip searches.
easy_install scipy
Searching for scipy
Reading http://pypi.python.org/simple/scipy/
Reading http://www.scipy.org
Reading http://sourceforge.net/project/showfiles.php?group_id=27747&package_id=19531
Reading http://new.scipy.org/Wiki/Download
All is not lost, however; pip can install from Subversion (SVN), Git, Mercurial, and Bazaar repositories. SciPy uses SVN:
pip install svn+http://svn.scipy.org/svn/scipy/trunk/#egg=scipy
Update (12-2012):
pip install git+https://github.com/scipy/scipy.git
Since NumPy is a dependency, it should be installed as well.
In Ubuntu 10.04 (Lucid), I could successfully pip install scipy (within a virtualenv) after installing some of its dependencies, in particular:
$ sudo apt-get install libamd2.2.0 libblas3gf libc6 libgcc1 libgfortran3 liblapack3gf libumfpack5.4.0 libstdc++6 build-essential gfortran libatlas-sse2-dev python-all-dev
To install scipy on windows follow these instructions:-
Step-1 : Press this link http://www.lfd.uci.edu/~gohlke/pythonlibs/#scipy to download a scipy .whl file (e.g. scipy-0.17.0-cp34-none-win_amd64.whl).
Step-2: Go to the directory where that download file is there from the command prompt (cd folder-name ).
Step-3: Run this command:
pip install scipy-0.17.0-cp27-none-win_amd64.whl
I tried all the above and nothing worked for me. This solved all my problems:
pip install -U numpy
pip install -U scipy
Note that the -U option to pip install requests that the package be upgraded. Without it, if the package is already installed pip will inform you of this and exit without doing anything.
If I first install BLAS, LAPACK and GCC Fortran as system packages (I'm using Arch Linux), I can get SciPy installed with:
pip install scipy
On Fedora, this works:
sudo yum install -y python-pip
sudo yum install -y lapack lapack-devel blas blas-devel
sudo yum install -y blas-static lapack-static
sudo pip install numpy
sudo pip install scipy
If you get any public key errors while downloading, add --nogpgcheck as parameter to yum, for example:
yum --nogpgcheck install blas-devel
On Fedora 23 onwards, use dnf instead of yum.
For the Arch Linux users:
pip install --user scipy prerequisites the following Arch packages to be installed:
gcc-fortran
blas
lapack
Addon for Ubuntu (Ubuntu 10.04 LTS (Lucid Lynx)):
The repository moved, but a
pip install -e git+http://github.com/scipy/scipy/#egg=scipy
failed for me... With the following steps, it finally worked out (as root in a virtual environment, where python3 is a link to Python 3.2.2):
install the Ubuntu dependencies (see elaichi), clone NumPy and SciPy:
git clone git://github.com/scipy/scipy.git scipy
git clone git://github.com/numpy/numpy.git numpy
Build NumPy (within the numpy folder):
python3 setup.py build --fcompiler=gnu95
Install SciPy (within the scipy folder):
python3 setup.py install
In my case, it wasn't working until I also installed the following package : libatlas-base-dev, gfortran
sudo apt-get install libatlas-base-dev gfortran
Then run pip install scipy
install python-3.4.4
scipy-0.15.1-win32-superpack-python3.4
apply the following commend doc
py -m pip install --upgrade pip
py -m pip install numpy
py -m pip install matplotlib
py -m pip install scipy
py -m pip install scikit-learn
The answer is yes, there is.
First you can easily install numpy use commands:
pip install numpy
Then you should install mkl, which is required by Scipy, and you can download it here
After download the file_name.whl you install it
C:\Users\****\Desktop\a> pip install mkl_service-1.1.2-cp35-cp35m-win32.whl
Processing c:\users\****\desktop\a\mkl_service-1.1.2-cp35-cp35m-win32.whl
Installing collected packages: mkl-service
Successfully installed mkl-service-1.1.2
Then at the same website you can download scipy-0.18.1-cp35-cp35m-win32.whl
Note:You should download the file_name.whl according to you python version, if you python version is 32bit python3.5 you should download this one, and the "win32" is about your python version, not your operating system version.
Then install file_name.whl like this:
C:\Users\****\Desktop\a>pip install scipy-0.18.1-cp35-cp35m-win32.whl
Processing c:\users\****\desktop\a\scipy-0.18.1-cp35-cp35m-win32.whl
Installing collected packages: scipy
Successfully installed scipy-0.18.1
Then there is only one more thing to do: comment out a specfic line or there will be error messages when you imput command "import scipy".
So comment out this line
from numpy._distributor_init import NUMPY_MKL # requires numpy+mkl
in this file: your_own_path\lib\site-packages\scipy__init__.py
Then you can use SciPy :)
Here tells you more about the last step.
Here is a similar anwser to a similar question.
Besides all of these answers,
If you install python of 32bit on your 64bit machine, you have to download scipy of 32-bit irrespective of your machine.
http://www.lfd.uci.edu/~gohlke/pythonlibs/
In the above URL you can download the packages and command is: pip install
For gentoo, it's in the main repository:
emerge --ask scipy
You can also use this in windows with python 3.6 python -m pip install scipy