Attempting to mound my directory in docker (to run pyspark) - python

I have a directory which I am trying to mount in docker to use a pyspark container.
I am passing the following code to try and host my local directory in the container
docker run -it -p 8888:8888 -v {absolute file path}:/home/jovyan/work --rm jupyter/pyspark-notebook
Users/{myname}/Documents/{filepath}" includes invalid characters for a local volume name, only "[a-zA-Z0-9][a-zA-Z0-9_.-]" are allowed. If you intended to pass a host directory, use absolute path.
Any ideas on whats going wrong and next steps would be greatly appreciated

Related

Save the output dataframe from docker to a local machine

Tried with {WORKDIR} & replaced {ADD} with {COPY} in Dockerfile. Still the CSV file is not being saved in the local folded in the local machine, why is this?
In order to write to a host file from the Docker container, first volume mount a directory into the running container.
For example, we can mount the current working directory into a directory in the container:
$ docker run -v $(PWD):/pwd_in_container -it --rm busybox touch /pwd_in_container/test
Then the file we created in the container will be available on the host:
$ ls test
test

Docker Run: Mounted Volume not showing change in files

I am struggling with running the latest changes. Below are the details.
Dockerfile
FROM python:3.7.3
RUN mkdir -p /usr/apps
COPY test.py /usr/apps
RUN pip install mindsdb
CMD [ "python","test.py" ]
Build
docker build -t py37:custom .
Run
docker run -it -v /Development/PetProjects/mindsdb:/usr/apps/ py37:custom
But it shows only the changes at the time of build.
First of all while starting your container you are not using volumes but bind mounts. So you mount directory /Development/PetProjects/mindsdb on your host machine to /usr/apps/ directory. Every change made to files on your host machine in this directory, will be visible in the container, and the other way round.
If you wanted to use volumes, you could create one using docker volume create command and then running container with this volume : docker container run -v volume_name:path_in_container image_name. Then you would be able to stop container and run it again by passing this volume to run command and changes to path_in_container directory could be stored across container creations.
Another thing is that you are trying to mount /usr/apps/ in your container and you copied a python script there using Dockerfile. Note that in you current docker run command contents of /Development/PetProjects/mindsdb will replace content of /usr/apps/ in your container and if you do not have your script in /Development/PetProjects/mindsdb - script will not be visible in the container.
Moreover your CMD seems not to work because of path relativeness. You should change your CMD to CMD [ "python","/usr/apps/test.py" ] or use WORKDIR option - WORKDIR /usr/apps/ so your python command could be executed from this directory and script could be visible there.
More information about differences between volumes and bind mounts can be found in docker documentation.

How to run a simple Python script without writing a complete Dockerfile?

I have set up Docker Toolbox on a Win 10 machine. I have some simple single file Python scripts that I want to run in Docker, just for learning purpose.
Started learning Docker today, and Python 3 days ago.
I assume I have set up Docker correctly, I can run the example hello-world image. No error messages during setup.
I am following an instruction from here https://runnable.com/docker/python/dockerize-your-python-application,
which says:
If you only need to run a simple script (with a single file), you can avoid writing a complete Dockerfile. In the examples below, assume you store my_script.py in /usr/src/widget_app/, and you want to name the container my-first-python-script:
docker run -it --rm --name my-first-python-script -v "$PWD":/usr/src/widget_app python:3 python my_script.py
If I type pwd, it shows:
/c/Program Files/Docker Toolbox
And the script I want to run is located here:
C:\Docker\Python\my_script.py
This is what I think should work:
docker run -it --rm --name my-first-python-script -v "$PWD":/c/Docker/Python python:3 python my_script.py
No matter how I try to specify the file directory, I get an error:
python: can't open file 'my_script.py': [Errno 2] No such file or directory
When you run -v "$PWD":/c/Docker/Python, you are saying you want to link your current working directory to the path /c/Docker/Python in the container, which isn't what you want to do. What you are trying to do is link C:\Docker\Python\ on your host to the container folder /usr/src/widget_app.
This command will put your script inside the container path /usr/src/widget_app, then run it:
docker run -it --rm --name my-first-python-script -v /c/Docker/Python:/usr/src/widget_app python:3 python /usr/src/widget_app/my_script.py

How to run my python script on docker?

I am trying to run my python script on docker. I tried different ways to do it but not able to run it on docker. My python script is given below:
import os
print ('hello')
I have already installed docker on my mac. But i want to know how i can make images and then push it to docker after that i wanna pull and run my script on docker itself.
Going by question title, and if one doesn't want to create docker image but just want to run a script using standard python docker images, it can run using below command
docker run -it --rm --name my-running-script -v "$PWD":/usr/src/myapp -w /usr/src/myapp python:3.7-alpine python script_to_run.py
Alright, first create a specific project directory for your docker image. For example:
mkdir /home/pi/Desktop/teasr/capturing
Copy your dockerfile and script in there and change the current context to this directory.
cp /home/pi/Desktop/teasr/capturing.py /home/pi/Desktop/teasr/dockerfile /home/pi/Desktop/teasr/capturing/
cd /home/pi/Desktop/teasr/capturing
This is for best practice, as the first thing the docker-engine does on build, is read the whole current context.
Next we'll take a look at your dockerfile. It should look something like this now:
FROM python:latest
WORKDIR /usr/local/bin
COPY capturing.py .
CMD ["capturing.py", "-OPTIONAL_FLAG"]
The next thing you need to do is build it with a smart name. Using dots is generally discouraged.
docker build -t pulkit/capturing:1.0 .
Next thing is to just run the image like you've done.
docker run -ti --name capturing pulkit/capturing:1.0
The script now get executed inside the container and will probably exit upon completion.
Edit after finding the problem that created the following error:
standard_init_linux.go:195: exec user process caused "exec format error"
There's a different architecture beneath raspberry pi's (ARM instead of x86_64), which COULD'VE BEEN the problem, but wasn't. If that would've been the problem, a switch of the parent image to FROM armhf/python would've been enough.
Source
BUT! The error kept occurring.
So the solution to this problem is a simple missing Sha-Bang on top of the python script. The first line in the script needs to be #!/usr/bin/env python and that should solve the problem.
Source
You need to create a dockerfile in the directory your script is in.
You can take this template:
FROM python:latest
COPY scriptname.py /usr/local/share/
CMD ["scriptname.py", "-flag"]
Then simply execute docker build -t pulkit/scriptname:1.0 . and your image should be created.
Your image should be visible under docker images. If you want to execute it on your local computer, use docker run.
If you want it to upload to the DockerHub, you need to log into the DockerHub with docker login, then upload the image with docker push.
I Followed #samprog (most accepted) answer on my machine running on UBUNTU VERSION="14.04.6".
and was getting "standard_init_linux.go:195: exec user process caused "exec format error"
None of the solution worked for me mentioned above.
Fixed the error after changing my Dockerfile as follows
FROM python:latest
COPY capturing.py ./capturing.py
CMD ["python","capturing.py"]
Note: If your script import some other module then you need to modify COPY statement in your Dockerfile as follows - COPY *.py ./
Hope this will be useful for others.
Another way to run python script on docker can be:
copy the local python script to docker:
docker cp yourlocalscript.path container_id:/dst_path/
container id can be found using:
docker ps
run the python script on docker:
docker exec -it python /container_script_path.py
its very simple
1- go to your Python script directory and create a file with this title without any extension
Dockerfile
2-now open the docker file and write your script name instead of sci.py
( content of Dockerfile )
FROM python:slim #i choice slim version you can choose another tag for example python:3
WORKDIR /usr/local/bin
COPY sci.py . #replace you scrip name with sci.py
CMD [ "python", "sci.py" ] #replace you scrip name with sci.py
save it and now you should create image file from this dockerfile and script py
and next run it
3-in path address folder write CMD and press Enter key :
4-When the cmd window opens for you, type in it :
docker build -t my-python-app . #this create image in docker by this title my-python-app
5- and findly run image:
docker run -it --rm --name my-running-app my-python-app
I've encountered this problem recently, this dependency HELL between python2 and python3 got me. Here is the solution.
Bind your current working directory to a Docker container with python2 and pip2 running.
Pull the docker image.
docker pull frolvlad/alpine-python2
Add this alias into /home/user/.zshrc or /home/user/.bashrc
alias python2='docker run -it --rm --name python2 -v "$PWD":"$PWD" -w
"$PWD" frolvlad/alpine-python2'
Once you type python2 into your CMD you'll be thrown into the Docker instance.

copy file from docker to host system using python script

I have logged into the docker from the below command, now from the python script i want to copy the file from docker to host system how to do this
sudo docker run -ti video:new /bin/bash
import os
os.system('cp /tmp/a.txt HOST:/tmp/a.txt')
Map a volume to share data with your host from the container.
docker run -v /tmp/:/tmp/ -ti video:new /bin/bash
Then let your python script copy the file to the /tmp directory inside your container.
import os
os.system('cp /path/to/a.txt /tmp/a.txt')
Through to the -v mapping, the file is placed on the docker host in the directory /tmp. Once you close your docker container, the file will still exist on the host as /tmp/a.txt.
The container can't copy information outside its isolation. If you wanna share information between container and host, please use volume mapper to do that (-v):
https://docs.docker.com/userguide/dockervolumes/

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