my setup : MacOS 10.12.3
default mac python version : 2.7.10
default mac python numpy version : 1.8
I wanted to run a program that needs numpy >1.9. I thought it was simple...but turns out to be a pain.
Things i tried already based on older threads i found...without any success :
pip install numpy, pip install --ignore-installed numpy, pip install numpy --upgrade, pip install --user -U numpy.
What i didnt manage to run was to uninstal default numpy and then reinstall new one (using pip uninstall numpy). There I get (even with sudo):
Exception: Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip/basecommand.py", line 246, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip/commands/uninstall.py", line
70, in run
requirement_set.uninstall(auto_confirm=options.yes)
File "/Library/Python/2.7/site-packages/pip/req/req_set.py", line 274, in uninstall
req.uninstall(auto_confirm=auto_confirm)
File "/Library/Python/2.7/site-packages/pip/req/req_install.py", line 730, in uninstall
paths_to_remove.remove(auto_confirm)
File "/Library/Python/2.7/site-packages/pip/req/req_uninstall.py", line 126, in remove
renames(path, new_path)
File "/Library/Python/2.7/site-packages/pip/utils/__init__.py", line 292, in renames
shutil.move(old, new)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py",
line 302, in move
copy2(src, real_dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py",
line 131, in copy2
copystat(src, dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py",
line 103, in copystat
os.chflags(dst, st.st_flags) **OSError: [Errno 1] Operation not permitted:
'/tmp/pip-g1dBU9-uninstall/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy-1.8.0rc1-py2.7.egg-info'**
I did manage to get homebrew python3 and get the program running in terminal, but its GUI-version is implemented in an another program (imageJ) that calls the default python2.7 and naturally fails.
Any ideas?
Related
I tried installing Pandas on macOS.
It first tries to install Numpy, says
Found existing installation: numpy 1.8.0rc1
DEPRECATION: Uninstalling a distutils installed project (numpy) has been deprecated and will be removed in a future version. This is due to the fact that uninstalling a distutils project will only partially uninstall the project.
Uninstalling numpy-1.8.0rc1:
Exception:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip/basecommand.py", line 215, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip/commands/install.py", line 342, in run
prefix=options.prefix_path,
File "/Library/Python/2.7/site-packages/pip/req/req_set.py", line 778, in install
requirement.uninstall(auto_confirm=True)
File "/Library/Python/2.7/site-packages/pip/req/req_install.py", line 754, in uninstall
paths_to_remove.remove(auto_confirm)
File "/Library/Python/2.7/site-packages/pip/req/req_uninstall.py", line 115, in remove
renames(path, new_path)
File "/Library/Python/2.7/site-packages/pip/utils/__init__.py", line 267, in renames
shutil.move(old, new)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 302, in move
copy2(src, real_dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 131, in copy2
copystat(src, dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 103, in copystat
os.chflags(dst, st.st_flags)
OSError: [Errno 1] Operation not permitted: '/var/folders/8y/lq4gsyx97_q171qrh2q18z0h0000gn/T/pip-9NwJUf-uninstall/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy-1.8.0rc1-py2.7.egg-info'
Then fails to install Pandas. "pip list" shows numpy (1.8.0rc1) has been installed.
Thanks for the help.
When I use sudo, this happens.
I guess you need to run pip as super user or a system user that has the permission to write to Python package site directory;
I don't own a mac but I think the general course of action for you will be to try to install pandas as root like this:
sudo pip install -U pandas
When trying to uninstall numpy I get the following message:
bvtmac00301:~ jonmc$ pip uninstall numpy
DEPRECATION: Uninstalling a distutils installed project (numpy) has been deprecated and will be removed in a future version. This is due to the fact that uninstalling a distutils project will only partially uninstall the project.
Uninstalling numpy-1.8.0rc1:
/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy-1.8.0rc1-py2.7.egg-info
Proceed (y/n)? y
Exception:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip/basecommand.py", line 215, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip/commands/uninstall.py", line 76, in run
requirement_set.uninstall(auto_confirm=options.yes)
File "/Library/Python/2.7/site-packages/pip/req/req_set.py", line 346, in uninstall
req.uninstall(auto_confirm=auto_confirm)
File "/Library/Python/2.7/site-packages/pip/req/req_install.py", line 754, in uninstall
paths_to_remove.remove(auto_confirm)
File "/Library/Python/2.7/site-packages/pip/req/req_uninstall.py", line 115, in remove
renames(path, new_path)
File "/Library/Python/2.7/site-packages/pip/utils/__init__.py", line 267, in renames
shutil.move(old, new)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 302, in move
copy2(src, real_dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 131, in copy2
copystat(src, dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 103, in copystat
os.chflags(dst, st.st_flags)
OSError: [Errno 1] Operation not permitted: '/var/folders/y1/7zsj8_x973n4xjwg5gg6s53jr4zz65/T/pip-C3YeRV-uninstall/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy-1.8.0rc1-py2.7.egg-info'
I'm trying to uninstall numpy in order to update it so it will run with pandas (which requires numpy 1.9). Running the following command
pip install -U numpy
gives the same result
Try:
pip install pandas --user
For a sentdex tutorial I had to install quandl, but whenever I try to install this python module in python2.7 I get a error:
Found existing installation: numpy 1.8.0rc1
DEPRECATION: Uninstalling a distutils installed project (numpy) has been deprecated and will be removed in a future version. This is due to the fact that uninstalling a distutils project will only partially uninstall the project.
Uninstalling numpy-1.8.0rc1:
Exception:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/basecommand.py", line 215, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/commands/install.py", line 342, in run
prefix=options.prefix_path,
File "/Library/Python/2.7/site-packages/pip-9.0.1-
py2.7.egg/pip/req/req_set.py", line 778, in install
requirement.uninstall(auto_confirm=True)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_install.py", line 754, in uninstall
paths_to_remove.remove(auto_confirm)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_uninstall.py", line 115, in remove
renames(path, new_path)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/utils/__init__.py", line 267, in renames
shutil.move(old, new)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 302, in move
copy2(src, real_dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 131, in copy2
copystat(src, dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 103, in copystat
os.chflags(dst, st.st_flags)
OSError: [Errno 1] Operation not permitted: '/var/folders/26/51wbl41d7hg6gh4vs7zlwchh0000gp/T/pip-HFl5IT-uninstall/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy-1.8.0rc1-py2.7.egg-info'
Ive seen this error whenever a installing module needed numpy but already found it so it tried to uninstall it thus resulting in a crash. I have tried "sudo pip install quandl", "pip install quandl", and some more.
Please Help, Thanks!
SOLVED!!!
I tried easy_install and it worked, can't believe that I couldn't find the answer on the internet!!!
I did : "sudo easy_install quandl" And it worked!!!
i have been trying to install tweepy on MAC OSX using pip from terminal. Command I use is
sudo pip install tweepy
While this command is executing an error occurs. Please tell me how I can bypass this to install tweepy.
Error:
DEPRECATION: Uninstalling a distutils installed project (six) has been deprecated and will be removed in a future version. This is due to the fact that uninstalling a distutils project will only partially uninstall the project.
Uninstalling six-1.4.1:
Exception:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip/basecommand.py", line 215, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip/commands/install.py", line 342, in run
prefix=options.prefix_path,
File "/Library/Python/2.7/site-packages/pip/req/req_set.py", line 778, in install
requirement.uninstall(auto_confirm=True)
File "/Library/Python/2.7/site-packages/pip/req/req_install.py", line 754, in uninstall
paths_to_remove.remove(auto_confirm)
File "/Library/Python/2.7/site-packages/pip/req/req_uninstall.py", line 115, in remove
renames(path, new_path)
File "/Library/Python/2.7/site-packages/pip/utils/__init__.py", line 267, in renames
shutil.move(old, new)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 302, in move
copy2(src, real_dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 131, in copy2
copystat(src, dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 103, in copystat
os.chflags(dst, st.st_flags)
OSError: [Errno 1] Operation not permitted: '/tmp/pip-pId7ub-uninstall/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/six-1.4.1-py2.7.egg-info'
As another user suggested in comments, problem is linked to six package.
Try to install tweepy running this command:
sudo pip install tweepy --ignore-installed six
or
pip install --ignore-installed six
There is an issue with six on MAC OSX. (link here)
I have a mac that has both Python 2.7.6 installed (by default) and Python 3.4.0 installed (by me).
I think that I may also have multiple versions of PIP installed. (When I run PIP --version I get pip 1.5.6 from /Library/Python/2.7/site-packages/pip-1.5.6-py2.7.egg (python 2.7)
But I know that Python 3 comes with version 1.5.4.
So, my questions are:
A. How do I find out if I have multiple versions of pip installed.
B. If I do have multiple versions installed, how do I specify which one to use, or where the installed packages should go?
I have tried the suggestion outlined here (basically using pip-3.4) but I get command not found
The reason for all of this is that when trying to install any package with pip, even just to update (pip install --upgrade pip) I get the following errors
Exception:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip-1.5.6-py2.7.egg/pip/basecommand.py", line 122, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip-1.5.6-py2.7.egg/pip/commands/install.py", line 283, in run
requirement_set.install(install_options, global_options, root=options.root_path)
File "/Library/Python/2.7/site-packages/pip-1.5.6-py2.7.egg/pip/req.py", line 1431, in install
requirement.uninstall(auto_confirm=True)
File "/Library/Python/2.7/site-packages/pip-1.5.6-py2.7.egg/pip/req.py", line 598, in uninstall
paths_to_remove.remove(auto_confirm)
File "/Library/Python/2.7/site-packages/pip-1.5.6-py2.7.egg/pip/req.py", line 1836, in remove
renames(path, new_path)
File "/Library/Python/2.7/site-packages/pip-1.5.6-py2.7.egg/pip/util.py", line 295, in renames
shutil.move(old, new)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 299, in move
rmtree(src)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 247, in rmtree
rmtree(fullname, ignore_errors, onerror)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 252, in rmtree
onerror(os.remove, fullname, sys.exc_info())
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 250, in rmtree
os.remove(fullname)
OSError: [Errno 13] Permission denied: '/Library/Python/2.7/site-packages/pip-1.5.6-py2.7.egg/EGG-INFO/dependency_links.txt'
Storing debug log for failure in /Users/Startec/Library/Logs/pip.log
Just like python is symlinked to your Python 2 version, pip is symlinked to Python 2’s pip.
Instead, use pip3 which should refer to the active Python 3 installation (accessible using python3). You can also use the full version name, but then without a dash: pip3.4.