I'm wondering if there can be a sort of deadlock in the following code. I have to read each element of a database (about 1 million items), process it, then collect the results in a unique file.
I've parallelized the execution with multiprocessing using two Queue's and three types of processes:
Reader: Main process which reads the database and adds the read items in a task_queue
Worker: Pool of processes. Each worker gets an item from task_queue, processes the item, saves the results in an intermediate file stored in item_name/item_name.txt and puts the item_name in a completed_queue
Writer: Process which gets an item_name from completed_queue, gets the intermediate result from item_name/item_name.txt and writes it in results.txt
from multiprocessing import Pool, Process, Queue
class Computation():
def __init__(self,K):
self.task_queue = Queue()
self.completed_queue = Queue()
self.n_cpus = K
def reader(self,):
with open(db, "r") as db:
... # Read an item
self.task_queue.put(item)
def worker(self,):
while True:
item = self.task_queue.get(True)
if item == "STOP":
break
self.process_item(item)
def writer_process(self,):
while True:
f = self.completed_queue.get(True)
if f == "DONE":
break
self.write_f(f)
def run(self,):
pool = Pool(n_cpus, self.worker, args=())
writer = Process(target=self.writer_process, args=())
writer.start()
self.reader()
pool.close()
pool.join()
self.completed_queue.put("DONE")
writer.join()
The code works, but it seems that sometimes the writer or the pool stops working (or they are very slow). Is a deadlock possible in this scenario?
There are a couple of issues with your code. First, by using the queues as you are, you are in effect creating your own process pool and have no need for using the multiprocessing.Pool class at all. You are using a pool initializer as an actual pool worker and it's a bit of a misuse of this class; you would be better off to just use regular Process instances (my opinion, anyway).
Second, although it is well and good that you are putting message DONE to the writer_process to signal it to terminate, you have not done similarly for the self.n_cpus worker processes, which are looking for 'STOP' messages, and therefore the reader function needs to put self.n_cpus STOP messages in the task queue:
from multiprocessing import Process, Queue
class Computation():
def __init__(self, K):
self.task_queue = Queue()
self.completed_queue = Queue()
self.n_cpus = K
def reader(self,):
with open(db, "r") as db:
... # Read an item
self.task_queue.put(item)
# signal to the worker processes to terminate:
for _ in range(self.n_cpus):
self.task_queue.put('STOP')
def worker(self,):
while True:
item = self.task_queue.get(True)
if item == "STOP":
break
self.process_item(item)
def writer_process(self,):
while True:
f = self.completed_queue.get(True)
if f == "DONE":
break
self.write_f(f)
def run(self):
processes = [Process(target=self.worker) for _ in range(self.n_cpus)]
for p in processes:
p.start()
writer = Process(target=self.writer_process, args=())
writer.start()
self.reader()
for p in processes:
p.join()
self.completed_queue.put("DONE")
writer.join()
Personally, instead of using 'STOP' and 'DONE' as the sentinel messages, I would use None instead, assuming that is not a valid actual message. I have tested the above code where reader just processed strings in a list and self.process_item(item) simply appended ' done' to the each of those strings and put the modified string on the completed_queue and replaced self.write_f in the writer_process with a print call. I did not see any problems with the code as is.
Update to use a Managed Queue
Disclaimer: I have had no experience using mpi4py and have no idea how the queue proxies would get distributed across different computers. The above code may not be sufficient as suggested by the following article, How to share mutliprocessing queue object between multiple computers. However, that code is creating instances of Queue.Queue (that code is Python 2 code) and not the proxies that are returned by the multiprocessing.SyncManager. The documentation on this is very poor. Try the above change to see if it works better (it will be slower).
Because the proxy returned by manager.Queue(), I have had to rearrange the code a bit; the queues are now being passed explicitly as arguments to the process functions:
from multiprocessing import Process, Manager
class Computation():
def __init__(self, K):
self.n_cpus = K
def reader(self, task_queue):
with open(db, "r") as db:
... # Read an item
# signal to the worker processes to terminate:
for _ in range(self.n_cpus):
task_queue.put('STOP')
def worker(self, task_queue, completed_queue):
while True:
item = task_queue.get(True)
if item == "STOP":
break
self.process_item(item)
def writer_process(self, completed_queue):
while True:
f = completed_queue.get(True)
if f == "DONE":
break
self.write_f(f)
def run(self):
with Manager() as manager:
task_queue = manager.Queue()
completed_queue = manager.Queue()
processes = [Process(target=self.worker, args=(task_queue, completed_queue)) for _ in range(self.n_cpus)]
for p in processes:
p.start()
writer = Process(target=self.writer_process, args=(completed_queue,))
writer.start()
self.reader(task_queue)
for p in processes:
p.join()
completed_queue.put("DONE")
writer.join()
I have a large number of tasks (40,000 to be exact) that I am using a Pool to run in parallel. To maximize efficiency, I pass the list of all tasks at once to starmap and let them run.
I would like to have it so that if my program is broken using Ctrl+C then currently running tasks will be allowed to finish but new ones will not be started. I have figured out the signal handling part to handle the Ctrl+C breaking just fine using the recommended method and this works well (at least with Python 3.6.9 that I am using):
import os
import signal
import random as rand
import multiprocessing as mp
def init() :
signal.signal(signal.SIGINT, signal.SIG_IGN)
def child(a, b, c) :
st = rand.randrange(5, 20+1)
print("Worker thread", a+1, "sleep for", st, "...")
os.system("sleep " + str(st))
pool = mp.Pool(initializer=init)
try :
pool.starmap(child, [(i, 2*i, 3*i) for i in range(10)])
pool.close()
pool.join()
print("True exit!")
except KeyboardInterrupt :
pool.terminate()
pool.join()
print("Interupted exit!")
The problem is that Pool seems to have no function to let the currently running tasks complete and then stop. It only has terminate and close. In the example above I use terminate but this is not what I want as this immediately terminates all running tasks (whereas I want to let the currently running tasks run to completion). On the other hand, close simply prevents adding more tasks, but calling close then join will wait for all pending tasks to complete (40,000 of them in my real case) (whereas I only want currently running tasks to finish not all of them).
I could somehow gradually add my tasks one by one or in chunks so I could use close and join when interrupted, but this seems less efficient unless there is a way to add a new task as soon as one finishes manually (which I'm not seeing how to do from the Pool documentation). It really seems like my use case would be common and that Pool should have a function for this, but I have not seen this question asked anywhere (or maybe I'm just not searching for the right thing).
Does anyone know how to accomplish this easily?
I tried to do something similar with concurrent.futures - see the last code block in this answer: it attempts to throttle adding tasks to the pool and only adds new tasks as tasks complete. You could change the logic to fit your needs. Maybe keep the pending work items slightly greater than the number of workers so you don't starve the executor. something like:
import concurrent.futures
import random as rand
import time
def child(*args, n=0):
signal.signal(signal.SIGINT, signal.SIG_IGN)
a,b,c = args
st = rand.randrange(1, 5)
time.sleep(st)
x = f"Worker {n} thread {a+1} slept for {st} - args:{args}"
return (n,x)
if __name__ == '__main__':
nworkers = 5 # ncpus?
results = []
fs = []
with concurrent.futures.ProcessPoolExecutor(max_workers=nworkers) as executor:
data = ((i, 2*i, 3*i) for i in range(100))
for n,args in enumerate(data):
try:
# limit pending tasks
while len(executor._pending_work_items) >= nworkers + 2:
# wait till one completes and get the result
futures = concurrent.futures.wait(fs, return_when=concurrent.futures.FIRST_COMPLETED)
#print(futures)
results.extend(future.result() for future in futures.done)
print(f'{len(results)} results so far')
fs = list(futures.not_done)
print(f'add a new task {n}')
fs.append(executor.submit(child, *args,**{'n':n}))
except KeyboardInterrupt as e:
print('ctrl-c!!}',file=sys.stderr)
# don't add anymore tasks
break
# get leftover results as they finish
for future in concurrent.futures.as_completed(fs):
print(f'{len(executor._pending_work_items)} tasks pending:')
result = future.result()
results.append(result)
results.sort()
# separate the results from the value used to sort
for n,result in results:
print(result)
Here is a way to get the results sorted in submission order without modifying the task. It uses a dictionary to relate each future to its submission order and uses it for the sort key.
# same imports
def child(*args):
signal.signal(signal.SIGINT, signal.SIG_IGN)
a,b,c = args
st = random.randrange(1, 5)
time.sleep(st)
x = f"Worker thread {a+1} slept for {st} - args:{args}"
return x
if __name__ == '__main__':
nworkers = 5 # ncpus?
sort_dict = {}
results = []
fs = []
with concurrent.futures.ProcessPoolExecutor(max_workers=nworkers) as executor:
data = ((i, 2*i, 3*i) for i in range(100))
for n,args in enumerate(data):
try:
# limit pending tasks
while len(executor._pending_work_items) >= nworkers + 2:
# wait till one completes and grab it
futures = concurrent.futures.wait(fs, return_when=concurrent.futures.FIRST_COMPLETED)
results.extend(future for future in futures.done)
print(f'{len(results)} futures completed so far')
fs = list(futures.not_done)
future = executor.submit(child, *args)
fs.append(future)
print(f'task {n} added - future:{future}')
sort_dict[future] = n
except KeyboardInterrupt as e:
print('ctrl-c!!',file=sys.stderr)
# don't add anymore tasks
break
# get leftover futures as they finish
for future in concurrent.futures.as_completed(fs):
print(f'{len(executor._pending_work_items)} tasks pending:')
results.append(future)
#sort the futures
results.sort(key=lambda f: sort_dict[f])
# get the results
for future in results:
print(future.result())
You could also just add an attribute to each future and sort on that (no need for the dictionary)
...
future = executor.submit(child, *args)
# add an attribute to the future that can be sorted on
future.submitted = n
fs.append(future)
...
results.sort(key=lambda f: f.submitted)
I am trying to understand threading in Python. I've looked at the documentation and examples, but quite frankly, many examples are overly sophisticated and I'm having trouble understanding them.
How do you clearly show tasks being divided for multi-threading?
Since this question was asked in 2010, there has been real simplification in how to do simple multithreading with Python with map and pool.
The code below comes from an article/blog post that you should definitely check out (no affiliation) - Parallelism in one line: A Better Model for Day to Day Threading Tasks. I'll summarize below - it ends up being just a few lines of code:
from multiprocessing.dummy import Pool as ThreadPool
pool = ThreadPool(4)
results = pool.map(my_function, my_array)
Which is the multithreaded version of:
results = []
for item in my_array:
results.append(my_function(item))
Description
Map is a cool little function, and the key to easily injecting parallelism into your Python code. For those unfamiliar, map is something lifted from functional languages like Lisp. It is a function which maps another function over a sequence.
Map handles the iteration over the sequence for us, applies the function, and stores all of the results in a handy list at the end.
Implementation
Parallel versions of the map function are provided by two libraries:multiprocessing, and also its little known, but equally fantastic step child:multiprocessing.dummy.
multiprocessing.dummy is exactly the same as multiprocessing module, but uses threads instead (an important distinction - use multiple processes for CPU-intensive tasks; threads for (and during) I/O):
multiprocessing.dummy replicates the API of multiprocessing, but is no more than a wrapper around the threading module.
import urllib2
from multiprocessing.dummy import Pool as ThreadPool
urls = [
'http://www.python.org',
'http://www.python.org/about/',
'http://www.onlamp.com/pub/a/python/2003/04/17/metaclasses.html',
'http://www.python.org/doc/',
'http://www.python.org/download/',
'http://www.python.org/getit/',
'http://www.python.org/community/',
'https://wiki.python.org/moin/',
]
# Make the Pool of workers
pool = ThreadPool(4)
# Open the URLs in their own threads
# and return the results
results = pool.map(urllib2.urlopen, urls)
# Close the pool and wait for the work to finish
pool.close()
pool.join()
And the timing results:
Single thread: 14.4 seconds
4 Pool: 3.1 seconds
8 Pool: 1.4 seconds
13 Pool: 1.3 seconds
Passing multiple arguments (works like this only in Python 3.3 and later):
To pass multiple arrays:
results = pool.starmap(function, zip(list_a, list_b))
Or to pass a constant and an array:
results = pool.starmap(function, zip(itertools.repeat(constant), list_a))
If you are using an earlier version of Python, you can pass multiple arguments via this workaround).
(Thanks to user136036 for the helpful comment.)
Here's a simple example: you need to try a few alternative URLs and return the contents of the first one to respond.
import Queue
import threading
import urllib2
# Called by each thread
def get_url(q, url):
q.put(urllib2.urlopen(url).read())
theurls = ["http://google.com", "http://yahoo.com"]
q = Queue.Queue()
for u in theurls:
t = threading.Thread(target=get_url, args = (q,u))
t.daemon = True
t.start()
s = q.get()
print s
This is a case where threading is used as a simple optimization: each subthread is waiting for a URL to resolve and respond, to put its contents on the queue; each thread is a daemon (won't keep the process up if the main thread ends -- that's more common than not); the main thread starts all subthreads, does a get on the queue to wait until one of them has done a put, then emits the results and terminates (which takes down any subthreads that might still be running, since they're daemon threads).
Proper use of threads in Python is invariably connected to I/O operations (since CPython doesn't use multiple cores to run CPU-bound tasks anyway, the only reason for threading is not blocking the process while there's a wait for some I/O). Queues are almost invariably the best way to farm out work to threads and/or collect the work's results, by the way, and they're intrinsically threadsafe, so they save you from worrying about locks, conditions, events, semaphores, and other inter-thread coordination/communication concepts.
NOTE: For actual parallelization in Python, you should use the multiprocessing module to fork multiple processes that execute in parallel (due to the global interpreter lock, Python threads provide interleaving, but they are in fact executed serially, not in parallel, and are only useful when interleaving I/O operations).
However, if you are merely looking for interleaving (or are doing I/O operations that can be parallelized despite the global interpreter lock), then the threading module is the place to start. As a really simple example, let's consider the problem of summing a large range by summing subranges in parallel:
import threading
class SummingThread(threading.Thread):
def __init__(self,low,high):
super(SummingThread, self).__init__()
self.low=low
self.high=high
self.total=0
def run(self):
for i in range(self.low,self.high):
self.total+=i
thread1 = SummingThread(0,500000)
thread2 = SummingThread(500000,1000000)
thread1.start() # This actually causes the thread to run
thread2.start()
thread1.join() # This waits until the thread has completed
thread2.join()
# At this point, both threads have completed
result = thread1.total + thread2.total
print result
Note that the above is a very stupid example, as it does absolutely no I/O and will be executed serially albeit interleaved (with the added overhead of context switching) in CPython due to the global interpreter lock.
Like others mentioned, CPython can use threads only for I/O waits due to GIL.
If you want to benefit from multiple cores for CPU-bound tasks, use multiprocessing:
from multiprocessing import Process
def f(name):
print 'hello', name
if __name__ == '__main__':
p = Process(target=f, args=('bob',))
p.start()
p.join()
Just a note: A queue is not required for threading.
This is the simplest example I could imagine that shows 10 processes running concurrently.
import threading
from random import randint
from time import sleep
def print_number(number):
# Sleeps a random 1 to 10 seconds
rand_int_var = randint(1, 10)
sleep(rand_int_var)
print "Thread " + str(number) + " slept for " + str(rand_int_var) + " seconds"
thread_list = []
for i in range(1, 10):
# Instantiates the thread
# (i) does not make a sequence, so (i,)
t = threading.Thread(target=print_number, args=(i,))
# Sticks the thread in a list so that it remains accessible
thread_list.append(t)
# Starts threads
for thread in thread_list:
thread.start()
# This blocks the calling thread until the thread whose join() method is called is terminated.
# From http://docs.python.org/2/library/threading.html#thread-objects
for thread in thread_list:
thread.join()
# Demonstrates that the main process waited for threads to complete
print "Done"
The answer from Alex Martelli helped me. However, here is a modified version that I thought was more useful (at least to me).
Updated: works in both Python 2 and Python 3
try:
# For Python 3
import queue
from urllib.request import urlopen
except:
# For Python 2
import Queue as queue
from urllib2 import urlopen
import threading
worker_data = ['http://google.com', 'http://yahoo.com', 'http://bing.com']
# Load up a queue with your data. This will handle locking
q = queue.Queue()
for url in worker_data:
q.put(url)
# Define a worker function
def worker(url_queue):
queue_full = True
while queue_full:
try:
# Get your data off the queue, and do some work
url = url_queue.get(False)
data = urlopen(url).read()
print(len(data))
except queue.Empty:
queue_full = False
# Create as many threads as you want
thread_count = 5
for i in range(thread_count):
t = threading.Thread(target=worker, args = (q,))
t.start()
Given a function, f, thread it like this:
import threading
threading.Thread(target=f).start()
To pass arguments to f
threading.Thread(target=f, args=(a,b,c)).start()
I found this very useful: create as many threads as cores and let them execute a (large) number of tasks (in this case, calling a shell program):
import Queue
import threading
import multiprocessing
import subprocess
q = Queue.Queue()
for i in range(30): # Put 30 tasks in the queue
q.put(i)
def worker():
while True:
item = q.get()
# Execute a task: call a shell program and wait until it completes
subprocess.call("echo " + str(item), shell=True)
q.task_done()
cpus = multiprocessing.cpu_count() # Detect number of cores
print("Creating %d threads" % cpus)
for i in range(cpus):
t = threading.Thread(target=worker)
t.daemon = True
t.start()
q.join() # Block until all tasks are done
Python 3 has the facility of launching parallel tasks. This makes our work easier.
It has thread pooling and process pooling.
The following gives an insight:
ThreadPoolExecutor Example (source)
import concurrent.futures
import urllib.request
URLS = ['http://www.foxnews.com/',
'http://www.cnn.com/',
'http://europe.wsj.com/',
'http://www.bbc.co.uk/',
'http://some-made-up-domain.com/']
# Retrieve a single page and report the URL and contents
def load_url(url, timeout):
with urllib.request.urlopen(url, timeout=timeout) as conn:
return conn.read()
# We can use a with statement to ensure threads are cleaned up promptly
with concurrent.futures.ThreadPoolExecutor(max_workers=5) as executor:
# Start the load operations and mark each future with its URL
future_to_url = {executor.submit(load_url, url, 60): url for url in URLS}
for future in concurrent.futures.as_completed(future_to_url):
url = future_to_url[future]
try:
data = future.result()
except Exception as exc:
print('%r generated an exception: %s' % (url, exc))
else:
print('%r page is %d bytes' % (url, len(data)))
ProcessPoolExecutor (source)
import concurrent.futures
import math
PRIMES = [
112272535095293,
112582705942171,
112272535095293,
115280095190773,
115797848077099,
1099726899285419]
def is_prime(n):
if n % 2 == 0:
return False
sqrt_n = int(math.floor(math.sqrt(n)))
for i in range(3, sqrt_n + 1, 2):
if n % i == 0:
return False
return True
def main():
with concurrent.futures.ProcessPoolExecutor() as executor:
for number, prime in zip(PRIMES, executor.map(is_prime, PRIMES)):
print('%d is prime: %s' % (number, prime))
if __name__ == '__main__':
main()
I saw a lot of examples here where no real work was being performed, and they were mostly CPU-bound. Here is an example of a CPU-bound task that computes all prime numbers between 10 million and 10.05 million. I have used all four methods here:
import math
import timeit
import threading
import multiprocessing
from concurrent.futures import ThreadPoolExecutor, ProcessPoolExecutor
def time_stuff(fn):
"""
Measure time of execution of a function
"""
def wrapper(*args, **kwargs):
t0 = timeit.default_timer()
fn(*args, **kwargs)
t1 = timeit.default_timer()
print("{} seconds".format(t1 - t0))
return wrapper
def find_primes_in(nmin, nmax):
"""
Compute a list of prime numbers between the given minimum and maximum arguments
"""
primes = []
# Loop from minimum to maximum
for current in range(nmin, nmax + 1):
# Take the square root of the current number
sqrt_n = int(math.sqrt(current))
found = False
# Check if the any number from 2 to the square root + 1 divides the current numnber under consideration
for number in range(2, sqrt_n + 1):
# If divisible we have found a factor, hence this is not a prime number, lets move to the next one
if current % number == 0:
found = True
break
# If not divisible, add this number to the list of primes that we have found so far
if not found:
primes.append(current)
# I am merely printing the length of the array containing all the primes, but feel free to do what you want
print(len(primes))
#time_stuff
def sequential_prime_finder(nmin, nmax):
"""
Use the main process and main thread to compute everything in this case
"""
find_primes_in(nmin, nmax)
#time_stuff
def threading_prime_finder(nmin, nmax):
"""
If the minimum is 1000 and the maximum is 2000 and we have four workers,
1000 - 1250 to worker 1
1250 - 1500 to worker 2
1500 - 1750 to worker 3
1750 - 2000 to worker 4
so let’s split the minimum and maximum values according to the number of workers
"""
nrange = nmax - nmin
threads = []
for i in range(8):
start = int(nmin + i * nrange/8)
end = int(nmin + (i + 1) * nrange/8)
# Start the thread with the minimum and maximum split up to compute
# Parallel computation will not work here due to the GIL since this is a CPU-bound task
t = threading.Thread(target = find_primes_in, args = (start, end))
threads.append(t)
t.start()
# Don’t forget to wait for the threads to finish
for t in threads:
t.join()
#time_stuff
def processing_prime_finder(nmin, nmax):
"""
Split the minimum, maximum interval similar to the threading method above, but use processes this time
"""
nrange = nmax - nmin
processes = []
for i in range(8):
start = int(nmin + i * nrange/8)
end = int(nmin + (i + 1) * nrange/8)
p = multiprocessing.Process(target = find_primes_in, args = (start, end))
processes.append(p)
p.start()
for p in processes:
p.join()
#time_stuff
def thread_executor_prime_finder(nmin, nmax):
"""
Split the min max interval similar to the threading method, but use a thread pool executor this time.
This method is slightly faster than using pure threading as the pools manage threads more efficiently.
This method is still slow due to the GIL limitations since we are doing a CPU-bound task.
"""
nrange = nmax - nmin
with ThreadPoolExecutor(max_workers = 8) as e:
for i in range(8):
start = int(nmin + i * nrange/8)
end = int(nmin + (i + 1) * nrange/8)
e.submit(find_primes_in, start, end)
#time_stuff
def process_executor_prime_finder(nmin, nmax):
"""
Split the min max interval similar to the threading method, but use the process pool executor.
This is the fastest method recorded so far as it manages process efficiently + overcomes GIL limitations.
RECOMMENDED METHOD FOR CPU-BOUND TASKS
"""
nrange = nmax - nmin
with ProcessPoolExecutor(max_workers = 8) as e:
for i in range(8):
start = int(nmin + i * nrange/8)
end = int(nmin + (i + 1) * nrange/8)
e.submit(find_primes_in, start, end)
def main():
nmin = int(1e7)
nmax = int(1.05e7)
print("Sequential Prime Finder Starting")
sequential_prime_finder(nmin, nmax)
print("Threading Prime Finder Starting")
threading_prime_finder(nmin, nmax)
print("Processing Prime Finder Starting")
processing_prime_finder(nmin, nmax)
print("Thread Executor Prime Finder Starting")
thread_executor_prime_finder(nmin, nmax)
print("Process Executor Finder Starting")
process_executor_prime_finder(nmin, nmax)
if __name__ == "__main__":
main()
Here are the results on my Mac OS X four-core machine
Sequential Prime Finder Starting
9.708213827005238 seconds
Threading Prime Finder Starting
9.81836523200036 seconds
Processing Prime Finder Starting
3.2467174359990167 seconds
Thread Executor Prime Finder Starting
10.228896902000997 seconds
Process Executor Finder Starting
2.656402041000547 seconds
Using the blazing new concurrent.futures module
def sqr(val):
import time
time.sleep(0.1)
return val * val
def process_result(result):
print(result)
def process_these_asap(tasks):
import concurrent.futures
with concurrent.futures.ProcessPoolExecutor() as executor:
futures = []
for task in tasks:
futures.append(executor.submit(sqr, task))
for future in concurrent.futures.as_completed(futures):
process_result(future.result())
# Or instead of all this just do:
# results = executor.map(sqr, tasks)
# list(map(process_result, results))
def main():
tasks = list(range(10))
print('Processing {} tasks'.format(len(tasks)))
process_these_asap(tasks)
print('Done')
return 0
if __name__ == '__main__':
import sys
sys.exit(main())
The executor approach might seem familiar to all those who have gotten their hands dirty with Java before.
Also on a side note: To keep the universe sane, don't forget to close your pools/executors if you don't use with context (which is so awesome that it does it for you)
For me, the perfect example for threading is monitoring asynchronous events. Look at this code.
# thread_test.py
import threading
import time
class Monitor(threading.Thread):
def __init__(self, mon):
threading.Thread.__init__(self)
self.mon = mon
def run(self):
while True:
if self.mon[0] == 2:
print "Mon = 2"
self.mon[0] = 3;
You can play with this code by opening an IPython session and doing something like:
>>> from thread_test import Monitor
>>> a = [0]
>>> mon = Monitor(a)
>>> mon.start()
>>> a[0] = 2
Mon = 2
>>>a[0] = 2
Mon = 2
Wait a few minutes
>>> a[0] = 2
Mon = 2
Most documentation and tutorials use Python's Threading and Queue module, and they could seem overwhelming for beginners.
Perhaps consider the concurrent.futures.ThreadPoolExecutor module of Python 3.
Combined with with clause and list comprehension it could be a real charm.
from concurrent.futures import ThreadPoolExecutor, as_completed
def get_url(url):
# Your actual program here. Using threading.Lock() if necessary
return ""
# List of URLs to fetch
urls = ["url1", "url2"]
with ThreadPoolExecutor(max_workers = 5) as executor:
# Create threads
futures = {executor.submit(get_url, url) for url in urls}
# as_completed() gives you the threads once finished
for f in as_completed(futures):
# Get the results
rs = f.result()
With borrowing from this post we know about choosing between the multithreading, multiprocessing, and async/asyncio and their usage.
Python 3 has a new built-in library in order to make concurrency and parallelism — concurrent.futures
So I'll demonstrate through an experiment to run four tasks (i.e. .sleep() method) by Threading-Pool:
from concurrent.futures import ThreadPoolExecutor, as_completed
from time import sleep, time
def concurrent(max_worker):
futures = []
tic = time()
with ThreadPoolExecutor(max_workers=max_worker) as executor:
futures.append(executor.submit(sleep, 2)) # Two seconds sleep
futures.append(executor.submit(sleep, 1))
futures.append(executor.submit(sleep, 7))
futures.append(executor.submit(sleep, 3))
for future in as_completed(futures):
if future.result() is not None:
print(future.result())
print(f'Total elapsed time by {max_worker} workers:', time()-tic)
concurrent(5)
concurrent(4)
concurrent(3)
concurrent(2)
concurrent(1)
Output:
Total elapsed time by 5 workers: 7.007831811904907
Total elapsed time by 4 workers: 7.007944107055664
Total elapsed time by 3 workers: 7.003149509429932
Total elapsed time by 2 workers: 8.004627466201782
Total elapsed time by 1 workers: 13.013478994369507
[NOTE]:
As you can see in the above results, the best case was 3 workers for those four tasks.
If you have a process task instead of I/O bound or blocking (multiprocessing instead of threading) you can change the ThreadPoolExecutor to ProcessPoolExecutor.
I would like to contribute with a simple example and the explanations I've found useful when I had to tackle this problem myself.
In this answer you will find some information about Python's GIL (global interpreter lock) and a simple day-to-day example written using multiprocessing.dummy plus some simple benchmarks.
Global Interpreter Lock (GIL)
Python doesn't allow multi-threading in the truest sense of the word. It has a multi-threading package, but if you want to multi-thread to speed your code up, then it's usually not a good idea to use it.
Python has a construct called the global interpreter lock (GIL).
The GIL makes sure that only one of your 'threads' can execute at any one time. A thread acquires the GIL, does a little work, then passes the GIL onto the next thread.
This happens very quickly so to the human eye it may seem like your threads are executing in parallel, but they are really just taking turns using the same CPU core.
All this GIL passing adds overhead to execution. This means that if you want to make your code run faster then using the threading
package often isn't a good idea.
There are reasons to use Python's threading package. If you want to run some things simultaneously, and efficiency is not a concern,
then it's totally fine and convenient. Or if you are running code that needs to wait for something (like some I/O) then it could make a lot of sense. But the threading library won't let you use extra CPU cores.
Multi-threading can be outsourced to the operating system (by doing multi-processing), and some external application that calls your Python code (for example, Spark or Hadoop), or some code that your Python code calls (for example: you could have your Python code call a C function that does the expensive multi-threaded stuff).
Why This Matters
Because lots of people spend a lot of time trying to find bottlenecks in their fancy Python multi-threaded code before they learn what the GIL is.
Once this information is clear, here's my code:
#!/bin/python
from multiprocessing.dummy import Pool
from subprocess import PIPE,Popen
import time
import os
# In the variable pool_size we define the "parallelness".
# For CPU-bound tasks, it doesn't make sense to create more Pool processes
# than you have cores to run them on.
#
# On the other hand, if you are using I/O-bound tasks, it may make sense
# to create a quite a few more Pool processes than cores, since the processes
# will probably spend most their time blocked (waiting for I/O to complete).
pool_size = 8
def do_ping(ip):
if os.name == 'nt':
print ("Using Windows Ping to " + ip)
proc = Popen(['ping', ip], stdout=PIPE)
return proc.communicate()[0]
else:
print ("Using Linux / Unix Ping to " + ip)
proc = Popen(['ping', ip, '-c', '4'], stdout=PIPE)
return proc.communicate()[0]
os.system('cls' if os.name=='nt' else 'clear')
print ("Running using threads\n")
start_time = time.time()
pool = Pool(pool_size)
website_names = ["www.google.com","www.facebook.com","www.pinterest.com","www.microsoft.com"]
result = {}
for website_name in website_names:
result[website_name] = pool.apply_async(do_ping, args=(website_name,))
pool.close()
pool.join()
print ("\n--- Execution took {} seconds ---".format((time.time() - start_time)))
# Now we do the same without threading, just to compare time
print ("\nRunning NOT using threads\n")
start_time = time.time()
for website_name in website_names:
do_ping(website_name)
print ("\n--- Execution took {} seconds ---".format((time.time() - start_time)))
# Here's one way to print the final output from the threads
output = {}
for key, value in result.items():
output[key] = value.get()
print ("\nOutput aggregated in a Dictionary:")
print (output)
print ("\n")
print ("\nPretty printed output: ")
for key, value in output.items():
print (key + "\n")
print (value)
Here is the very simple example of CSV import using threading. (Library inclusion may differ for different purpose.)
Helper Functions:
from threading import Thread
from project import app
import csv
def import_handler(csv_file_name):
thr = Thread(target=dump_async_csv_data, args=[csv_file_name])
thr.start()
def dump_async_csv_data(csv_file_name):
with app.app_context():
with open(csv_file_name) as File:
reader = csv.DictReader(File)
for row in reader:
# DB operation/query
Driver Function:
import_handler(csv_file_name)
Here is multi threading with a simple example which will be helpful. You can run it and understand easily how multi threading is working in Python. I used a lock for preventing access to other threads until the previous threads finished their work. By the use of this line of code,
tLock = threading.BoundedSemaphore(value=4)
you can allow a number of processes at a time and keep hold to the rest of the threads which will run later or after finished previous processes.
import threading
import time
#tLock = threading.Lock()
tLock = threading.BoundedSemaphore(value=4)
def timer(name, delay, repeat):
print "\r\nTimer: ", name, " Started"
tLock.acquire()
print "\r\n", name, " has the acquired the lock"
while repeat > 0:
time.sleep(delay)
print "\r\n", name, ": ", str(time.ctime(time.time()))
repeat -= 1
print "\r\n", name, " is releaseing the lock"
tLock.release()
print "\r\nTimer: ", name, " Completed"
def Main():
t1 = threading.Thread(target=timer, args=("Timer1", 2, 5))
t2 = threading.Thread(target=timer, args=("Timer2", 3, 5))
t3 = threading.Thread(target=timer, args=("Timer3", 4, 5))
t4 = threading.Thread(target=timer, args=("Timer4", 5, 5))
t5 = threading.Thread(target=timer, args=("Timer5", 0.1, 5))
t1.start()
t2.start()
t3.start()
t4.start()
t5.start()
print "\r\nMain Complete"
if __name__ == "__main__":
Main()
None of the previous solutions actually used multiple cores on my GNU/Linux server (where I don't have administrator rights). They just ran on a single core.
I used the lower level os.fork interface to spawn multiple processes. This is the code that worked for me:
from os import fork
values = ['different', 'values', 'for', 'threads']
for i in range(len(values)):
p = fork()
if p == 0:
my_function(values[i])
break
As a python3 version of the second anwser:
import queue as Queue
import threading
import urllib.request
# Called by each thread
def get_url(q, url):
q.put(urllib.request.urlopen(url).read())
theurls = ["http://google.com", "http://yahoo.com", "http://www.python.org","https://wiki.python.org/moin/"]
q = Queue.Queue()
def thread_func():
for u in theurls:
t = threading.Thread(target=get_url, args = (q,u))
t.daemon = True
t.start()
s = q.get()
def non_thread_func():
for u in theurls:
get_url(q,u)
s = q.get()
And you can test it:
start = time.time()
thread_func()
end = time.time()
print(end - start)
start = time.time()
non_thread_func()
end = time.time()
print(end - start)
non_thread_func() should cost 4 times the time spent than thread_func()
import threading
import requests
def send():
r = requests.get('https://www.stackoverlow.com')
thread = []
t = threading.Thread(target=send())
thread.append(t)
t.start()
It's very easy to understand. Here are the two simple ways to do threading.
import time
from concurrent.futures import ThreadPoolExecutor, as_completed
import threading
def a(a=1, b=2):
print(a)
time.sleep(5)
print(b)
return a+b
def b(**kwargs):
if "a" in kwargs:
print("am b")
else:
print("nothing")
to_do=[]
executor = ThreadPoolExecutor(max_workers=4)
ex1=executor.submit(a)
to_do.append(ex1)
ex2=executor.submit(b, **{"a":1})
to_do.append(ex2)
for future in as_completed(to_do):
print("Future {} and Future Return is {}\n".format(future, future.result()))
print("threading")
to_do=[]
to_do.append(threading.Thread(target=a))
to_do.append(threading.Thread(target=b, kwargs={"a":1}))
for threads in to_do:
threads.start()
for threads in to_do:
threads.join()
This code below can run 10 threads concurrently printing the numbers from 0 to 99:
from threading import Thread
def test():
for i in range(0, 100):
print(i)
thread_list = []
for _ in range(0, 10):
thread = Thread(target=test)
thread_list.append(thread)
for thread in thread_list:
thread.start()
for thread in thread_list:
thread.join()
And, this code below is the shorthand for loop version of the above code running 10 threads concurrently printing the numbers from 0 to 99:
from threading import Thread
def test():
[print(i) for i in range(0, 100)]
thread_list = [Thread(target=test) for _ in range(0, 10)]
[thread.start() for thread in thread_list]
[thread.join() for thread in thread_list]
This is the result below:
...
99
83
97
84
98
99
85
86
87
88
...
The easiest way of using threading/multiprocessing is to use more high level libraries like autothread.
import autothread
from time import sleep as heavyworkload
#autothread.multithreaded() # <-- This is all you need to add
def example(x: int, y: int):
heavyworkload(1)
return x*y
Now, you can feed your functions lists of ints. Autothread will handle everything for you and just give you the results computed in parallel.
result = example([1, 2, 3, 4, 5], 10)
I am launching concurrent threads doing some stuff:
concurrent = 10
q = Queue(concurrent * 2)
for j in range(concurrent):
t = threading.Thread(target=doWork)
t.daemon = True
t.start()
try:
# process each line and assign it to an available thread
for line in call_file:
q.put(line)
q.join()
except KeyboardInterrupt:
sys.exit(1)
At the same time I have a distinct thread counting time:
def printit():
threading.Timer(1.0, printit).start()
print current_status
printit()
I would like to increase (or decrease) the amount of concurrent threads for the main process let's say every minute. I can make a time counter in the time thread and make it do things every minute but how to change the amount of concurrent threads in the main process ?
Is it possible (and if yes how) to do that ?
This is my worker:
def UpdateProcesses(start,processnumber,CachesThatRequireCalculating,CachesThatAreBeingCalculated,CacheDict,CacheLock,IdleLock,FileDictionary,MetaDataDict,CacheIndexDict):
NewPool()
while start[processnumber]:
IdleLock.wait()
while len(CachesThatRequireCalculating)>0 and start[processnumber] == True:
CacheLock.acquire()
try:
cacheCode = CachesThatRequireCalculating[0] # The list can be empty if an other process takes the last item during the CacheLock
CachesThatRequireCalculating.remove(cacheCode)
print cacheCode,"starts processing by",processnumber,"process"
except:
CacheLock.release()
else:
CacheLock.release()
CachesThatAreBeingCalculated.append(cacheCode[:3])
Array,b,f = TIPP.LoadArray(FileDictionary[cacheCode[:2]])#opens the dask array
Array = ((Array[:,:,CacheIndexDict[cacheCode[:2]][cacheCode[2]]:CacheIndexDict[cacheCode[:2]][cacheCode[2]+1]].compute()/2.**(MetaDataDict[cacheCode[:2]]["Bit Depth"])*255.).astype(np.uint16)).transpose([1,0,2]) #slices and calculates the array
f.close() #close the file
if CachesThatAreBeingCalculated.count(cacheCode[:3]) != 0: #if not, this cache is not needed annymore (the cacheCode is removed bij wavelengthchange)
CachesThatAreBeingCalculated.remove(cacheCode[:3])
try: #If the first time the object if not aivalable try a second time
CacheDict[cacheCode[:3]] = Array
except:
CacheDict[cacheCode[:3]] = Array
print cacheCode,"done processing by",processnumber,"process"
if start[processnumber]:
IdleLock.clear()
This is how I start them:
self.ProcessLst = [] #list with all the processes who calculate the caches
for processnumber in range(min(NumberOfMaxProcess,self.processes)):
self.ProcessTerminateLst.append(True)
for processnumber in range(min(NumberOfMaxProcess,self.processes)):
self.ProcessLst.append(process.Process(target=Proc.UpdateProcesses,args=(self.ProcessTerminateLst,processnumber,self.CachesThatRequireCalculating,self.CachesThatAreBeingCalculated,self.CacheDict,self.CacheLock,self.IdleLock,self.FileDictionary,self.MetaDataDict,self.CacheIndexDict,)))
self.ProcessLst[-1].daemon = True
self.ProcessLst[-1].start()
I close them like this:
for i in range(len(self.ProcessLst)): #For both while loops in the processes self.ProcessTerminateLst[i] must be True. So or the process is now ready to be terminad or is still in idle mode.
self.ProcessTerminateLst[i] = False
self.IdleLock.set() #Makes sure no process is in Idle and all are ready to be terminated
I would use a pool. a pool has a max number of threads it uses at the same time, but you can apply inf number of jobs. They stay in the waiting list until a thread is available. I don't think you can change number of current processes in the pool.