In Ruby, I could easily pack an array representing some sequence into a binary string:
# for int
# "S*!" directive means format for 16-bit int, and using native endianess
# 16-bit int, so each digit was represented by two bytes. "\x01\x00" and "\x02\x00"
# here the native endianess is "little endian", so you should
# look at it backwards, "\x01\x00" becomes 0001, and "\x02\x00" becomes 0002
"\x01\x00\x02\x00".unpack("S!*")
# [1, 2]
# for hex
# "H*" means every element in the array is a digit for the hexstream
["037fea0651b358c361de"].pack("H*")
# "\x03\x7F\xEA\x06Q\xB3X\xC3a\xDE"
API doc for pack and unpack.
I couldn't find an uniform and equivalent way of transforming sequence to bytes (or vice versa) in python.
While struct provides methods for packing into bytes objects, the format string available has no option for hexstream.
EDIT: What I really want is something as versatile as Ruby's arr.pack and str.unpack, which supports multiple formatting and endianess control.
for a string in the utf-8 range it would be:
from binascii import unhexlify
strg = "464F4F"
unhexlify(strg).decode() # FOO (str)
if your content is just binary
strg = "037fea0651b358c361de"
unhexlify(strg) # b'\x03\x7f\xea\x06Q\xb3X\xc3a\xde' (bytes)
also bytes.fromhex (as in Davis Herring's answer) may be worth checking out.
struct does only fixed-width encodings that correspond to a memory dump of something like a C struct. You want bytes.fromhex or binascii.unhexlify, depending on the source type (which is never a list).
After any such conversion, you can use struct.unpack on a byte string containing any number of “records” corresponding to the format string; each is decoded into an element of the returned tuple. The format string supports the usual integer sizes and endianness choices; it is of course possible to construct a format dynamically to do things like read a matrix whose dimensions are chosen at runtime:
mat=struct.unpack("%dd"%cols,buf) # rows determined from len(buf)
It’s also possible to construct a lower-memory array if the element type is primitive; then you can follow up with byteswap as Alec A mentioned. NumPy offers similar facilities.
Try memoryview.cast, which allows you to change the endianness of an array or byte object.
Storing values as arrays makes things easier, as you can use the byteswap function.
Related
The following represents a binary image extracted from a file (spaces inserted between bytes to make reading easier). File is opened with 'rb' mode.
01 77 33 9F 41 42 43 44 00 11 11 11
In Python 2.7, I read it as a character string and I use ord() to extract the binary values and then I can extract or even search the string for a specific text value (such as the "ABCD" in characters 4-7). The binary bytes can be anything from 0-FF. I've been putting off conversion to python 3 partly because of this.
I need to be able, in Python 3, to treat a string of bytes as a mixture of binary and ascii (not unicode) values. The format is not fixed, it consists of data structures. For example, the 33 in byte 2 might be a record length that tells me where the start of the next record is. In other words, I can't just say that I know the text string is always in location 4.
I don't write the file, I just use it, so changing it is not an option.
I've seen lots of examples of using b' and other things to convert fixed strings but I need a way to intermix these values, extracting bytes, 2-byte to 8-byte values as 16-bit to 64-bit words, and extracting/searching for ASCII strings within the larger string.
The byte/character separation in Python 3 seems somewhat inflexible for what I need. I'm sure there's a way to do this I just haven't found an example or an answered question that seems to cover this case.
This is a simplified example, I can't provide real data (it's proprietary) but this illustrates the problem. The real files may be short (<1K) or huge (>100K), containing multiple records of different sizes.
Is there an easy, straightforward way to essentially replicate the functionality I have in Python 2.7?
This is on Windows.
Thanks
I need to be able, in Python 3, to treat a string of bytes as a mixture of binary and ascii (not unicode) values. The format is not fixed, it consists of data structures. For example, the 33 in byte 2 might be a record length that tells me where the start of the next record is. In other words, I can't just say that I know the text string is always in location 4.
Read the file in binary mode, as you are doing. This produces a bytes object, which in 3.x is not the same as a str (as it would be in 2.x).
Interpret the bytes as bytes, as needed, to figure out the general structure of the data. Slicing the bytes produces another bytes as before; indexing produces an int with the numeric value of that single byte (not as before) - no ord required.
When you have determined a subset of the bytes that represent a string (let's say for convenience that you have sliced it out), convert to string using the appropriate encoding: e.g. str(my_bytes, 'ascii'). Note that ASCII will not handle byte values 0x80 through 0xFF; especially with binary-ish legacy file formats, there's a good chance your data is actually something like Latin-1: str(my_bytes, 'iso-8859-1').
search the string for a specific text value
You can search at either the text or the byte level - bytes objects support the in operator, searching for either a subsequence of bytes or a single integer value. Whether it makes more sense to search before or after string conversion will depend on what you are doing.
using b' and other things to convert fixed strings
b'' is just the syntax for a literal bytes object. It's what you'll see if you ask for the repr of what you read from the file. Prefixing a b onto an existing string literal in your code isn't really "converting" anything, but replacing it with the value you should have had in the first place.
2-byte to 8-byte values as 16-bit to 64-bit words
The documentation says it at least as well as I could:
>>> help(int.from_bytes)
Help on built-in function from_bytes:
from_bytes(...) method of builtins.type instance
int.from_bytes(bytes, byteorder, *, signed=False) -> int
Return the integer represented by the given array of bytes.
The bytes argument must be a bytes-like object (e.g. bytes or bytearray).
The byteorder argument determines the byte order used to represent the
integer. If byteorder is 'big', the most significant byte is at the
beginning of the byte array. If byteorder is 'little', the most
significant byte is at the end of the byte array. To request the native
byte order of the host system, use `sys.byteorder' as the byte order value.
The signed keyword-only argument indicates whether two's complement is
used to represent the integer.
Is it possible to define byte order when converting a numpy array to binary string (with tobytes())?
I would want to force little endianness, but I don't want byte-swapping if it is not necessary.
When interfacing with C code I use this pattern
numpy.ascontiguousarray(x, dtype='>i4')
That dtype string specifies the endianess and precise bit width.
You can check ndarray.flags to see if conversions are necessary.
I have a bunch of binary data (the contents of a video game save-file, as it happens) where a part of the data contains both little-endian and big-endian integer values. Naively, without reading much of the docs, I tried to unpack it this way...
struct.unpack(
'3sB<H<H<H<H4s<I<I32s>IbBbBbBbB12s20sBB4s',
string_data
)
...and of course I got this cryptic error message:
struct.error: bad char in struct format
The problem is that struct.unpack format strings do not expect individual fields to be marked with endianness. The actually correct format-string here would be something like
struct.unpack(
'<3sBHHHH4sII32sIbBbBbBbB12s20sBB4s',
string_data
)
except that this will flip the endianness of the third I field (parsing it as little-endian, when I really want to parse it as big-endian).
Is there an easy and/or "Pythonic" solution to my problem? I have already thought of three possible solutions, but none of them is particularly elegant. In the absence of better ideas I'll probably go with number 3:
I could extract a substring and parse it separately:
(my.f1, my.f2, ...) = struct.unpack('<3sBHHHH4sII32sIbBbBbBbB12s20sBB4s', string_data)
my.f11 = struct.unpack('>I', string_data[56:60])
I could flip the bits in the field after the fact:
(my.f1, my.f2, ...) = struct.unpack('<3sBHHHH4sII32sIbBbBbBbB12s20sBB4s', string_data)
my.f11 = swap32(my.f11)
I could just change my downstream code to expect this field to be represented differently — it's actually a bitmask, not an arithmetic integer, so it wouldn't be too hard to flip around all the bitmasks I'm using with it; but the big-endian versions of these bitmasks are more mnemonically relevant than the little-endian versions.
A little late to the party, but I just had the same problem. I solved it with a custom numpy dtype, which allows to mix elements with different endianess (see https://numpy.org/doc/stable/reference/generated/numpy.dtype.html):
t=np.dtype('>u4,<u4') # Compound type with two 4-byte unsigned int with different byte order
a=np.zeros(shape=1, dtype=t) # Create an array of length one with above type
a[0][0]=1 # Assign first uint
a[0][1]=1 # Assign second uint
bytes=a.tobytes() # bytes should be b'\x01\x00\x00\x00\x00\x00\x00\x01'
b=np.frombuffer(buf, dtype=t) # should yield array[(1,1)]
c=np.frombuffer(buf, dtype=np.uint32) # yields array([ 1, 16777216]
I need to get an int through the network. Is this the proper way to convert to bytes in big-endian?
pack("I",socket.htonl(integer_value))
I unpack it as:
socket.ntohl(unpack("I",data)[0])
I noticed that pack-unpack also have the <> to use for endian conversion so I am not sure if I could just directly use that instead or if htonl is safer.
You should use only the struct module for communicating with another system. By using the htonl first, you'll end up with an indeterminate order being transmitted.
Since you need to convert the integer into a string of bytes in order to send it to another system, you'll need to use struct.pack (because htonl just returns a different integer than the one passed as argument and you cannot directly send an integer). And in using struct.pack you must choose an endianness for that string of bytes (if you don't specify one, you'll get a default ordering which may not be the same on the receiving side so you really need to choose one).
Converting an integer to a sequence of bytes in a definite order is exactly what struct.pack("!I", integer_value) does and a sequence of bytes in a definite order is exactly what you need on the receiving end.
On the other hand, if you use struct.pack("!I", socket.htonl(integer_value)), what does that do? Well, first it puts the integer into big-endian order (network byte order), then it takes your already big-endian integer and converts it to bytes in "big-endian order". But, on a little endian machine, that will actually reverse the ordering again, and you will end up transmitting the integer in little-endian byte order if you do both those two operations.
But on a big-endian machine htonl is a no-op, and then you're converting the result into bytes in big-endian order.
So using ntohl actually defeats the purpose and a receiving machine would have to know the byte-order used on the sending machine in order to properly decode it. Observe...
Little-endian box:
>>> print(socket.htonl(27))
452984832
>>> print(struct.pack("!I", 27))
b'\x00\x00\x00\x1b'
>>> print(struct.pack("!I", socket.htonl(27)))
b'\x1b\x00\x00\x00'
Big-endian box:
>>> print(socket.htonl(27))
27
>>> print(struct.pack("!I", 27))
b'\x00\x00\x00\x1b'
>>> print(struct.pack("!I", socket.htonl(27)))
b'\x00\x00\x00\x1b'
struct.unpack() uses '!' in the format specifiers for network byte order. But its the same as '>'...
I'm trying to read binary files containing a stream of float and int16 values. Those values are stored alternating.
[float][int16][float][int16]... and so on
now I want to read this data file by a python program using the struct functions.
For reading a block of say one such float-int16-pairs I assume the format string would be "fh".
Following output makes sense, the total size is 6 bytes
In [73]: struct.calcsize('fh')
Out[73]: 6
Now I'd like to read larger blocks at once to speed up the program...
In [74]: struct.calcsize('fhfh')
Out[74]: 14
Why is this not returning 12?
Quoting the documentation:
Note By default, the result of packing a given C struct includes pad bytes in order to maintain proper alignment for the C types involved; similarly, alignment is taken into account when unpacking. This behavior is chosen so that the bytes of a packed struct correspond exactly to the layout in memory of the corresponding C struct. To handle platform-independent data formats or omit implicit pad bytes, use standard size and alignment instead of native size and alignment: see Byte Order, Size, and Alignment for details.
https://docs.python.org/2/library/struct.html
If you want calcsize('fhfh') to be exactly twice calcsize('fh'), then you'll need to specify an alignment character.
Try '<fhfh' or '>fhfh', instead.
You have to specify the byte order or Endianness as size and alignment are based off of that So if you try this:
>>> struct.calcsize('fhfh')
>>> 14
>>> struct.calcsize('>fhfh')
>>> 12
The reason why is because in struct not specifying an endian defaults to native
for more details check here: https://docs.python.org/3.0/library/struct.html#struct.calcsize