I am inserting JSON data into a MySQL database
I am parsing the JSON and then inserting it into a MySQL db using the python connector
Through trial, I can see the error is associated with this piece of code
for steps in result['routes'][0]['legs'][0]['steps']:
query = ('SELECT leg_no FROM leg_data WHERE travel_mode = %s AND Orig_lat = %s AND Orig_lng = %s AND Dest_lat = %s AND Dest_lng = %s AND time_stamp = %s')
if steps['travel_mode'] == "pub_tran":
travel_mode = steps['travel_mode']
Orig_lat = steps['var_1']['dep']['lat']
Orig_lng = steps['var_1']['dep']['lng']
Dest_lat = steps['var_1']['arr']['lat']
Dest_lng = steps['var_1']['arr']['lng']
time_stamp = leg['_sent_time_stamp']
if steps['travel_mode'] =="a_pied":
query = ('SELECT leg_no FROM leg_data WHERE travel_mode = %s AND Orig_lat = %s AND Orig_lng = %s AND Dest_lat = %s AND Dest_lng = %s AND time_stamp = %s')
travel_mode = steps['travel_mode']
Orig_lat = steps['var_2']['lat']
Orig_lng = steps['var_2']['lng']
Dest_lat = steps['var_2']['lat']
Dest_lng = steps['var_2']['lng']
time_stamp = leg['_sent_time_stamp']
cursor.execute(query,(travel_mode, Orig_lat, Orig_lng, Dest_lat, Dest_lng, time_stamp))
leg_no = cursor.fetchone()[0]
print(leg_no)
I have inserted higher level details and am now searching the database to associate this lower level information with its parent. The only way to find this unique value is to search via the origin and destination coordinates with the time_stamp. I believe the logic is sound and by printing the leg_no immediately after this section, I can see values which appear at first inspection to be correct
However, when added to the rest of the code, it causes subsequent sections where more data is inserted using the cursor to fail with this error -
raise errors.InternalError("Unread result found.")
mysql.connector.errors.InternalError: Unread result found.
The issue seems similar to MySQL Unread Result with Python
Is the query too complex and needs splitting or is there another issue?
If the query is indeed too complex, can anyone advise how best to split this?
EDIT As per #Gord's help, Ive tried to dump any unread results
cursor.execute(query,(leg_travel_mode, leg_Orig_lat, leg_Orig_lng, leg_Dest_lat, leg_Dest_lng))
leg_no = cursor.fetchone()[0]
try:
cursor.fetchall()
except mysql.connector.errors.InterfaceError as ie:
if ie.msg == 'No result set to fetch from.':
pass
else:
raise
cursor.execute(query,(leg_travel_mode, leg_Orig_lat, leg_Orig_lng, leg_Dest_lat, leg_Dest_lng, time_stamp))
But, I still get
raise errors.InternalError("Unread result found.")
mysql.connector.errors.InternalError: Unread result found.
[Finished in 3.3s with exit code 1]
scratches head
EDIT 2 - when I print the ie.msg, I get -
No result set to fetch from
All that was required was for buffered to be set to true!
cursor = cnx.cursor(buffered=True)
The reason is that without a buffered cursor, the results are "lazily" loaded, meaning that "fetchone" actually only fetches one row from the full result set of the query. When you will use the same cursor again, it will complain that you still have n-1 results (where n is the result set amount) waiting to be fetched. However, when you use a buffered cursor the connector fetches ALL rows behind the scenes and you just take one from the connector so the mysql db won't complain.
I was able to recreate your issue. MySQL Connector/Python apparently doesn't like it if you retrieve multiple rows and don't fetch them all before closing the cursor or using it to retrieve some other stuff. For example
import mysql.connector
cnxn = mysql.connector.connect(
host='127.0.0.1',
user='root',
password='whatever',
database='mydb')
crsr = cnxn.cursor()
crsr.execute("DROP TABLE IF EXISTS pytest")
crsr.execute("""
CREATE TABLE pytest (
id INT(11) NOT NULL AUTO_INCREMENT,
firstname VARCHAR(20),
PRIMARY KEY (id)
)
""")
crsr.execute("INSERT INTO pytest (firstname) VALUES ('Gord')")
crsr.execute("INSERT INTO pytest (firstname) VALUES ('Anne')")
cnxn.commit()
crsr.execute("SELECT firstname FROM pytest")
fname = crsr.fetchone()[0]
print(fname)
crsr.execute("SELECT firstname FROM pytest") # InternalError: Unread result found.
If you only expect (or care about) one row then you can put a LIMIT on your query
crsr.execute("SELECT firstname FROM pytest LIMIT 0, 1")
fname = crsr.fetchone()[0]
print(fname)
crsr.execute("SELECT firstname FROM pytest") # OK now
or you can use fetchall() to get rid of any unread results after you have finished working with the rows you retrieved.
crsr.execute("SELECT firstname FROM pytest")
fname = crsr.fetchone()[0]
print(fname)
try:
crsr.fetchall() # fetch (and discard) remaining rows
except mysql.connector.errors.InterfaceError as ie:
if ie.msg == 'No result set to fetch from.':
# no problem, we were just at the end of the result set
pass
else:
raise
crsr.execute("SELECT firstname FROM pytest") # OK now
cursor.reset() is really what you want.
fetchall() is not good because you may end up moving unnecessary data from the database to your client.
The problem is about the buffer, maybe you disconnected from the previous MySQL connection and now it cannot perform the next statement. There are two ways to give the buffer to the cursor. First, only to the particular cursor using the following command:
import mysql.connector
cnx = mysql.connector.connect()
# Only this particular cursor will buffer results
cursor = cnx.cursor(buffered=True)
Alternatively, you could enable buffer for any cursor you use:
import mysql.connector
# All cursors created from cnx2 will be buffered by default
cnx2 = mysql.connector.connect(buffered=True)
cursor = cnx.cursor()
In case you disconnected from MySQL, the latter works for you.
Enjoy coding
If you want to get only one result from a request, and want after to reuse the same connexion for other requests, limit your sql select request to 1 using "limit 1" at the end of your request.
ex "Select field from table where x=1 limit 1;"
This method is faster using "buffered=True"
Set the consume_results argument on the connect() method to True.
cnx = mysql.connector.connect(
host="localhost",
user="user",
password="password",
database="database",
consume_results=True
)
Now instead of throwing an exception, it basically does fetchall().
Unfortunately this still makes it slow, if you have a lot of unread rows.
There is also a possibility that your connection to MySQL Workbench is disconnected. Establish the connection again. This solved the problem for me.
cursor.reset()
and then create tables and load entries
Would setting the cursor within the for loop, executing it, and then closing it again in the loop help?
Like:
for steps in result['routes'][0]['legs'][0]['steps']:
cursor = cnx.cursor()
....
leg_no = cursor.fetchone()[0]
cursor.close()
print(leg_no)
I'm trying to create a database with the name a user will provide. As far as I know the correct way is to use the second argument of execute().
So I did as follows:
import psycopg2
conn = psycopg2.connect(host="...", dbname="...",
user="...", password="...", port='...')
cursor = conn.cursor()
query = ''' CREATE DATABASE %s ;'''
name = 'stackoverflow_example_db'
conn.autocommit = True
cursor.execute(query, (name,))
cursor.close()
conn.close()
And I got this error:
psycopg2.errors.SyntaxError: syntax error at or near "'stackoverflow_example_db'"
LINE 1: CREATE DATABASE 'stackoverflow_example_db' ;
I need to do this statement avoiding SQL injection, so using the second argument is a must.
You can't pass values as second argument of execute(), if the statement is a CREATE DATABASE one.
As pointed out by unutbu one way to approach this is using the psycopg2.sql submodule and use identifiers to build the statement avoiding SQL injection.
The code:
import psycopg2
from psycopg2 import sql
conn = psycopg2.connect(host="...", dbname="...",
user="...", password="...", port='...')
cursor = conn.cursor()
query = ''' CREATE DATABASE {} ;'''
name = 'stackoverflow_example_db'
conn.autocommit = True
cursor.execute(sql.SQL(query).format(
sql.Identifier(name)))
cursor.close()
conn.close()
Other aditional observations:
format() do not work with %s, use {} instead
Autocommit mode is a must for this statement to work
The specified connection user needs creation privileges
I am inserting a couple thousand records into a table via the python code below:
values = ''
for row in cursor:
values = values + "(" + self.quoted_comma_separate(row) + "),"
values = values[:-1]
insert_statement = "INSERT INTO t1 ({0}) VALUES {1};".format(
self.comma_separate(members), values)
db = Database()
conn = db.get_db()
cursor = conn.cursor()
cursor.execute(insert_statement)
conn.commit()
conn.close()
When I check the database after it runs none of the records show up in the database. If I go into an MySQL editor and manually commit the transaction all of the records appear. Why is my conn.commit() not working?
The insert statements were fine. Turns out I had another database connection open and it was getting confused and committing to the wrong connection or something like that. Sorry for the pointless question :)
I'm new to mySQL and Python.
I have code to insert data from Python into mySQL,
conn = MySQLdb.connect(host="localhost", user="root", passwd="kokoblack", db="mydb")
for i in range(0,len(allnames)):
try:
query = "INSERT INTO resumes (applicant, jobtitle, lastworkdate, lastupdate, url) values ("
query = query + "'"+allnames[i]+"'," +"'"+alltitles[i]+"',"+ "'"+alldates[i]+"'," + "'"+allupdates[i]+"'," + "'"+alllinks[i]+"')"
x = conn.cursor()
x.execute(query)
row = x.fetchall()
except:
print "error"
It seems to be working fine, because "error" never appears. Instead, many rows of "1L" appear in my Python shell. However, when I go to MySQL, the "resumes" table in "mydb" remains completely empty.
I have no idea what could be wrong, could it be that I am not connected to MySQL's server properly when I'm viewing the table in MySQL? Help please.
(I only use import MySQLdb, is that enough?)
use commit to commit the changes that you have done
MySQLdb has autocommit off by default, which may be confusing at first
You could do commit like this
conn.commit()
or
conn.autocommit(True) Right after the connection is created with the DB
I have some code like this
db = MySQLdb.connect(host="localhost", user="root", passwd="root", db="domains")
cursor = db.cursor()
def check_urls(res):
pool = Pool(25)
for row in res:
pool.spawn(fetch, row[0], row[1])
pool.join()
def fetch(*args):
"""code trimmed for brevity"""
cursor.execute("""UPDATE com SET http_status=%s, is_checked=1 WHERE id=%s""",
(output.get('http_status', ""), id))
for _ in xrange(10000):
cursor.execute("SELECT domain, id FROM com WHERE is_checked IS NULL LIMIT 100")
result = cursor.fetchall()
check_urls(result)
db.commit()
cursor.close()
db.close()
My program get stuck at db.commit(). No values updated in the database. Can someone tell me whats wrong?.
Please note:
My check_urls function has a for loop and each loop has one mysql update query.
It seems like you should move your db.commit() into fetch function after cursor.execute. Another way you may use "global" keyword with cursor. Or, third way, just make cursor as parameter of functions.