how to print confusion matrix of keras Multi output? - python

I have one question.
I want to print a confusion matrix.
my model is functional api of keras.
and
model = Model(inputs=[data_input], outputs=[output_1, output_2])
output_1 = 9 classes
output_2 = 5 classes
My multi-classification model
data_input = Input(shape=(trainX.shape[1], trainX.shape[2]))
Conv1 = Conv1D(filters=50, kernel_size=4, padding='valid', activation='relu', strides=1)(data_input)
Conv1 = MaxPooling1D(pool_size=2)(Conv1)
Conv2 = Conv1D(filters=50, kernel_size=4, padding='valid', activation='relu', strides=1)(Conv1)
Conv2 = MaxPooling1D(pool_size=2)(Conv2)
Conv3 = Conv1D(filters=50, kernel_size=4, padding='valid', activation='relu', strides=1)(Conv2)
Conv3 = MaxPooling1D(pool_size=2)(Conv3)
Classification1 = LSTM(128, input_shape=(47, 50), return_sequences=False)(Conv3)
Classification2 = GRU(128, input_shape=(47, 50), return_sequences=False)(Conv3)
activity = Dense(9)(Classification1)
activity = Activation('softmax')(activity)
speed = Dense(5)(Classification2)
speed = Activation('softmax')(speed)
model = Model(inputs=[data_input], outputs=[activity, speed])
model.compile(loss= 'categorical_crossentropy' , optimizer='adam', metrics=[ 'accuracy' ])
print(model.summary())
history = model.fit(trainX, {'activation_1': trainY_Activity, 'activation_2': trainY_Speed},
validation_data=(testX, {'activation_1': testY_Activity, 'activation_2': testY_Speed}),
epochs=epochs, batch_size=batch_size, verbose=1, shuffle=False)

Related

Implementing DCGAN in keras but it is not properly trained

I am trying to implement DCGAN presented in this article. Here is my Generator and Discriminator:
ki = keras.initializers.RandomNormal(mean=0.0, stddev=0.02)
def discriminator_model():
discriminator = Sequential([
Conv2D(64, (3,3), strides=(2, 2), padding='same', kernel_initializer=ki, input_shape=[64,64, 3]), # No BatchNormilization in this layer
LeakyReLU(alpha=0.2),
Dropout(0.4),
Conv2D(64, (3,3), strides=(2, 2), padding='same', kernel_initializer=ki),
BatchNormalization(),
LeakyReLU(alpha=0.2),
Dropout(0.4),
Flatten(),
Dense(1, activation='sigmoid', kernel_initializer=ki)
])
return discriminator
===========================================
noise_shape = 100
def generator_model():
generator = Sequential([
Dense(4*4*512, input_shape=[noise_shape]),
Reshape([4,4,512]),
Conv2DTranspose(256, kernel_size=4, strides=2, padding="same", kernel_initializer= ki),
BatchNormalization(),
ReLU(),
Conv2DTranspose(128, kernel_size=4, strides=2, padding="same", kernel_initializer=ki),
BatchNormalization(),
ReLU(),
Conv2DTranspose(64, kernel_size=4, strides=2, padding="same", kernel_initializer=ki),
BatchNormalization(),
ReLU(),
Conv2DTranspose(3, kernel_size=4, strides=2, padding="same", kernel_initializer=ki, activation='tanh') # 3 filters, also no BatchNormilization in this layer
])
return generator
Here I have combined these to to build DCGAN:
DCGAN = Sequential([generator,discriminator])
opt = tf.keras.optimizers.Adam(learning_rate=0.0002, beta_1=0.5)
discriminator.compile(optimizer=opt, loss='binary_crossentropy', metrics=['accuracy'])
discriminator.trainable = False
DCGAN.compile(optimizer=opt, loss='binary_crossentropy', metrics=['accuracy'])
Then I prepared my batches and tried to train my model. Here is the code:
epochs = 500
batch_size = 128
loss_from_discriminator_model=[]
loss_from_generator_model=[]
acc_dis = []
acc_gen = []
with tf.device('/gpu:0'):
for epoch in range(epochs):
for i in range(images.shape[0]//batch_size):
# Training Discriminator
noise = np.random.uniform(-1,1,size=[batch_size, noise_shape])
gen_image = generator.predict_on_batch(noise) # Generating fake images
train_dataset = images[i*batch_size:(i+1)*batch_size]
train_labels_real = np.ones(shape=(batch_size,1)) # Real image labels
discriminator.trainable = True
d_loss_real, d_acc_real = discriminator.train_on_batch(train_dataset,train_labels_real) # Training on real images
train_labels_fake = np.zeros(shape=(batch_size,1))
d_loss_fake, d_acc_fake = discriminator.train_on_batch(gen_image,train_labels_fake) # Training on fake images
# Training Generator
noise = np.random.uniform(-1, 1, size=[batch_size,noise_shape])
train_label_fake_for_gen_training = np.ones(shape=(batch_size,1))
discriminator.trainable = False
g_loss, g_acc = DCGAN.train_on_batch(noise, train_label_fake_for_gen_training)
loss_from_discriminator_model.append(d_loss_real+d_loss_fake)
loss_from_generator_model.append(g_loss)
acc_dis.append((d_acc_real + d_acc_fake) / 2)
acc_gen.append(g_acc)
The problem is my modell doesn't seem to learn anything. values of accuracy and loss don't seem rational. Here is a plot of values of generator and discriminator loss during training.
Thanks in advance.

Tensorflow Keras model has loss of nan while fitting

I have a tensorflow keras model which I want to train with obtained data. However, when training, there is a loss of nan after the first epoch. The Input has a range [-1|1].
This is my model:
x = Input(shape=(8, 8, 7), name='input')
value_head = Conv2D(
filters=1,
kernel_size=(1, 1),
padding='same',
use_bias=False,
activation='linear',
kernel_regularizer=regularizers.l2(0.0001),
)(x)
value_head = BatchNormalization()(value_head)
value_head = LeakyReLU()(value_head)
value_head = Flatten()(value_head)
value_head = Dense(
20,
use_bias=False,
activation='linear',
kernel_regularizer=regularizers.l2(0.0001),
)(x)
value_head = LeakyReLU()(value_head)
value_head = Dense(
1,
use_bias=False,
activation='tanh',
kernel_regularizer=regularizers.l2(0.0001),
name='value_head',
)(value_head)
policy_head = Conv2D(
filters=2,
kernel_size=(1, 1),
padding='same',
use_bias=False,
activation='linear',
kernel_regularizer=regularizers.l2(0.0001),
)(x)
policy_head = BatchNormalization()(policy_head)
policy_head = LeakyReLU()(policy_head)
policy_head = Flatten()(policy_head)
policy_head = Dense(
self.mOutputDim,
use_bias=False,
activation='linear',
kernel_regularizer=regularizers.l2(0.0001),
name='policy_head',
)(x)
model = Model(inputs=[nn_input], outputs=[value_head, policy_head])
model.compile(loss={'value_head': 'mean_squared_error', 'policy_head': softmax_cross_entropy_with_logits},
optimizer=SGD(lr=0.00001, momentum=0.9),
loss_weights={'value_head': 0.5, 'policy_head': 0.5}
)
Training looks as following:
training_states = np.array(
[self.mAI.convert_training_state_node_to_model_input(current_node)
.reshape((8, 8, 7))
for current_node in training_data.mTrainingStateNodes])
training_targets = {
'value_head': np.array([np.array([training_data.mWinner])]),
'policy_head': np.array([current_node.convert_edges_visit_count_to_policy_map()
for current_node in training_data.mTrainingStateNodes])}
fit = model.fit(training_states,
training_targets,
epochs=3,
verbose=1,
validation_split=0,
batch_size=64)
I would be very grateful for a solution and constructive criticism to my question.

How to reduce the error of tensorflow model?

Who can suggest how to improve the model?
The regular model in sklearn LinearRegression() predicts temperature with an error of 1 and the error of the model built manually on tensorflow won't drop below 5.5, no matter the activation function, the number of layers, or epochs.
The data was both standardized and derived into positive values
def createModelG(inputShape, dropout, initW):
model = Sequential()
model.add(Dense(4096,
kernel_regularizer=keras.regularizers.l2(0.001),
activation = 'elu',
kernel_initializer = initW,
input_dim = inputShape
))
model.add(Dropout(dropout))
#for i in range(3):
# model.add(Dense(512, activation = 'relu'))
# model.add(Dropout(dropout))
model.add(Dense(1024,
kernel_regularizer=keras.regularizers.l2(0.001),
activation = 'elu'
))
model.add(Dropout(dropout))
model.add(Dense(1))
model.compile(
loss = 'mae',
optimizer = tf.keras.optimizers.Adam(learning_rate = 0.0000005),
metrics = ['mse', 'mae']
)
return model
startModelTest = crossValdation(createModelG, trainDataXS, 0.01, 'truncated_normal', 'VancouverT', PrintDot())
modelTest = startModelTest[1]
hist = startModelTest[2]
startModelTest[0]
loss mse mae val_loss val_mse val_mae
0 22.6255 737.889 21.3214 7.32549 55.3201 6.02149
1 21.6446 677.313 20.3387 7.83092 64.0345 6.5251
2 21.1013 646.857 19.7952 7.00224 49.6842 5.69622
3 22.3446 712.008 21.0386 8.07596 68.7968 6.77008
4 24.2565 874.824 22.9531 7.71605 65.3973 6.41274
0 --- --- --- --- --- ---
0 22.3945
link to all code and result of my keras model and ready sklearn models:
https://www.kaggle.com/alihanurumov/weather-prediction-network
def createModelG(inputShape):
model = Sequential()
model.add(Dense(4096, input_dim = inputShape,
kernel_initializer = initializers.glorot_uniform(seed = 1),
kernel_regularizer = keras.regularizers.l2(0.01), activation = "relu"))
model.add(Dense(2048,
kernel_initializer = initializers.glorot_uniform(seed = 1), activation = "relu"))
model.add(Dense(2048,
kernel_initializer = initializers.glorot_uniform(seed = 1), activation = "relu"))
model.add(Dense(1024,
kernel_initializer = initializers.glorot_uniform(seed = 1), activation = "relu"))
model.add(Dense(1024,
kernel_initializer = initializers.glorot_uniform(seed = 1), activation = "relu"))
model.add(layers.Dropout(0.05))
model.add(Dense(1))
optimizer = tf.keras.optimizers.Adam(learning_rate = 0.000001)
model.compile(loss = 'mse', optimizer = optimizer, metrics = ["mse", "mae"])
return model

KERAS TUNER: object of type 'HyperParameters' has no len()

here its my code trying to use KERAS TUNER:
datagen = ImageDataGenerator(
rescale=1.0/255.0,
zoom_range=[-2, 2],
width_shift_range=[-25, 25],
height_shift_range=[-25, 25],
rotation_range=40,
shear_range=40,
horizontal_flip=True,
vertical_flip=True,
brightness_range=[0.98,1.05],
featurewise_center=True,
samplewise_center=True,
# channel_shift_range=1.5,
#featurewise_center=True,
#featurewise_std_normalization=True,
validation_split=0.10)
mean,std=auxfunctions.getMeanStdClassification()
datagen.mean=mean
datagen.std=std
numClasses = 5
width=240 #diabetic retinopaty 120 120, drRafael 40 40, 96 96
height=240
input_shape=(width,height,3)
train_generator = datagen.flow_from_dataframe(
dataframe=trainLabels,
directory='./resized_train_cropped',
x_col="image",
y_col="level",
target_size=(240,240),
batch_size=16,
class_mode='categorical',
color_mode='rgb', #quitar o no quitar
subset='training')
validation_generator =datagen.flow_from_dataframe(
dataframe=trainLabels,
directory='./resized_train_cropped',
x_col="image",
y_col="level",
target_size=(240,240),
batch_size=16,
class_mode='categorical',
color_mode='rgb',
subset='validation')
#----------------------------------------------------------------------------------------
def createBaseNetwork(input_shape):
weight_decay = 1e-4
L2_norm = regularizers.l2(weight_decay)
input = Input(shape=input_shape)
print(input)
x = Conv2D(96, (9, 9), activation='relu', name='conv1', kernel_regularizer=L2_norm)(input)
x = MaxPooling2D((3, 3), name='pool1')(x)
x = BatchNormalization(axis=-1, momentum=0.99, epsilon=0.001)(x)
x = Conv2D(384, (5, 5), activation='relu', name='conv2', kernel_regularizer=L2_norm)(x)
x = MaxPooling2D((3, 3), name='pool2')(x)
x = BatchNormalization(axis=-1, momentum=0.99, epsilon=0.001)(x)
x = Conv2D(384, (3, 3), activation='relu', name='conv3')(x)
x = Conv2D(384, (3, 3), activation='relu', name='conv4')(x)
x = Conv2D(256, (3, 3), activation='relu', name='conv5')(x)
x = MaxPooling2D((3, 3), name='pool3')(x)
x = Flatten()(x)
x = Dense(4096, activation='relu', name='fc1')(x)
return Model(input, x)
# ---------------------------------------------------------------------------------
hp=HyperParameters()
baseNetwork=createBaseNetwork(input_shape)
#baseNetwork.load_weights('./ModelWeights2.h5',by_name=True)
for l in baseNetwork.layers:
l.trainable=True
input_a = Input(shape=input_shape,name='input1')
outLayers = baseNetwork(input_a)
outLayers = Dense(2048, activation='relu', name='fc3')(outLayers)
outLayers= Dropout(0.2)(outLayers)
outLayers = Dense(1024, activation='relu', name='fc4')(outLayers)
outLayers= Dropout(0.2)(outLayers)
outLayers = Dense(hp.Int('input_units',min_value=32,max_value=512), activation='relu', name='fc5')(outLayers)
classifier = Dense(numClasses, activation='softmax', name='predictions')(outLayers)
model = Model(input_a, classifier)
model.summary()
tuner = RandomSearch(
model,
objective='val_accuracy',
max_trials=1,
executions_per_trial=1,
directory='./logtunner'
)
tuner.search(
train_generator,
validation_data=validation_generator,
epochs=1,
)
For now im just trying to use it on the last Dense layer, as you can see i just want to stimate a good number of neurons with this:
hp.Int('input_units',min_value=32,max_value=512)
But i get an error like this:
ValueError: TypeError: object of type 'HyperParameters' has no len()
I dont know how to solve it, i spent hours watching videos and tutorials but no idea of what is happening.
I also realize that there is another error mesage:
This function does not handle the case of the path where all inputs are not already EagerTensors
But i dont have any idea about that too
I was having more or less of the same error.
If you pay attention to to the keras-tuner in the tensorflow website https://www.tensorflow.org/tutorials/keras/keras_tuner or in the keras website, you see the following:
tuner = kt.Hyperband(model_builder,
objective = 'val_accuracy',
max_epochs = 10,
factor = 3,
directory = 'my_dir',
project_name = 'intro_to_kt')
the first input to the tuner is the function model_builder that is declared earlier as
def model_builder(hp):
model = keras.Sequential()
model.add(keras.layers.Flatten(input_shape=(28, 28)))
# Tune the number of units in the first Dense layer
# Choose an optimal value between 32-512
hp_units = hp.Int('units', min_value = 32, max_value = 512, step = 32)
model.add(keras.layers.Dense(units = hp_units, activation = 'relu'))
model.add(keras.layers.Dense(10))
# Tune the learning rate for the optimizer
# Choose an optimal value from 0.01, 0.001, or 0.0001
hp_learning_rate = hp.Choice('learning_rate', values = [1e-2, 1e-3, 1e-4])
model.compile(optimizer = keras.optimizers.Adam(learning_rate = hp_learning_rate),
loss = keras.losses.SparseCategoricalCrossentropy(from_logits = True),
metrics = ['accuracy'])
return model
So, all you need is reorganize your code to follow the same structure. You need to encapsulate the keras model and keras-tuner hp inside a function.
Cheers.

Python Keras Tensorflow Embedding Layer Indices[i,j] = k is not in [0,max_features]

I am trying to do Author Identification, my train_vecs_w2v.shape = (15663, 400).
y_train.shape = (15663,3) which has 3 label one hot encoded.
Now the problem is I am having an error in the Embedding layer. Indices[0,X] = -1 is not in [0, 15663). How to solve this? Is it my code or Keras/Tensorflow?
print('Building Model')
n=19579
max_features = 15663
max_length = 400
EMBEDDING_DIM = 100
model7 = Sequential()
model7.add(Embedding(len(train_vecs_w2v), EMBEDDING_DIM, input_length=max_length, dtype='float32', trainable=True, weights=None, embeddings_initializer='uniform', embeddings_regularizer=None, activity_regularizer=None, embeddings_constraint=None))
print(model7.output_shape)
model7.add(Convolution1D(filters =128, kernel_size = 3, strides=1, activation='relu', use_bias=False, border_mode='same'))
print(model7.output_shape)
model7.add(MaxPooling1D(pool_size = 3))
print(model7.output_shape)
model7.add(Convolution1D(filters = 64, kernel_size = 5, strides=1, activation='relu', border_mode='same'))
print(model7.output_shape)
model7.add(MaxPooling1D(pool_size = 5))
print(model7.output_shape)
model7.add(Flatten()) # model.output_shape == (None, 64*input_shape of convolution layer)
print(model7.output_shape)
model7.add(Dense(output_dim = 64, activation='relu')) # input_shape = (batch_size, input_dim)
print(model7.output_shape)
model7.add(Dense(output_dim = 32, activation='relu'))
print(model7.output_shape)
model7.add(Dense(output_dim = 3, activation='softmax'))
model7.compile(optimizer='adam',
loss='categorical_crossentropy',
metrics=['categorical_accuracy'])
model7.fit(train_vecs_w2v, y_train_vec, epochs=50, batch_size=32, verbose=2)
The error I am getting
InvalidArgumentError (see above for traceback): indices[0,1] = -1 is not in [0, 15663)
[[Node: embedding_1/Gather = Gather[Tindices=DT_INT32, Tparams=DT_FLOAT, validate_indices=true, _device="/job:localhost/replica:0/task:0/device:CPU:0"](embedding_1/embeddings/read, embedding_1/Cast)]]
I think the problem here is with the word vectors count.
It should be
len(train_vecs_w2v) + 1

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