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RuntimeError: Could not infer dtype of dict
I'm getting above error when i'm using a pre-trained transformer model from hugging face
https://huggingface.co/SEBIS/code_trans_t5_base_code_comment_generation_java_transfer_learning_finetune
I want to fine-tune the model on one of the custom datasets that I have prepared.
Please access the dataset from Kaggle
https://www.kaggle.com/datasets/codkiller0911/kotlin-code-snippets
adding the dataset tot he notebook
import pandas as pd
train_dataset = pd.read_csv('kotlin_code_comment_train.tsv',sep = '\t')
val_dataset = pd.read_csv('kotlin_code_comment_test.tsv',sep = '\t')
Preparing the dataset for tokenisation
from transformers import AutoTokenizer, AutoModelForSeq2SeqLM
from transformers import TrainingArguments, Trainer
tokenizer = AutoTokenizer.from_pretrained("SEBIS/code_trans_t5_base_code_comment_generation_java_transfer_learning_finetune")
model = AutoModelForSeq2SeqLM.from_pretrained("SEBIS/code_trans_t5_base_code_comment_generation_java_transfer_learning_finetune")
train_encodings = tokenizer(train_dataset["Code_Function"].values.tolist(),truncation=True,padding=True,max_length=512)
train_message = tokenizer(train_dataset["Message"].values.tolist(),truncation=True,padding=True,max_length=512)
val_encodings = tokenizer(val_dataset["code_function"].values.tolist(),
truncation=True,
padding=True)
val_message = tokenizer(val_dataset["message"].values.tolist(),
truncation=True,
padding=True)
Loading the model and training args to start the training
import torch
from torch.utils.data import Dataset, DataLoader
class CustomTextDataset(Dataset):
def __init__(self, txt, labels):
self.labels = labels
self.text = txt
def __getitem__(self, idx):
text = {key: torch.tensor(val[idx]) for key, val in self.text.items()}
if self.labels:
text["labels"] = {key: torch.tensor(val[idx]) for key, val in self.labels.items()}
return text
def __len__(self):
return len(self.labels["input_ids"])
train_dataset = CustomTextDataset(train_encodings, train_message)
val_dataset = CustomTextDataset(val_encodings, val_message)
def compute_metrics(p):
print(type(p))
pred, labels = p
pred = np.argmax(pred, axis=1)
accuracy = accuracy_score(y_true=labels, y_pred=pred)
recall = recall_score(y_true=labels, y_pred=pred)
precision = precision_score(y_true=labels, y_pred=pred)
f1 = f1_score(y_true=labels, y_pred=pred)
return {"accuracy": accuracy, "precision": precision, "recall": recall, "f1": f1}
# Define Trainer
args = TrainingArguments(
output_dir="output",
max_steps=3000
)
trainer = Trainer(
model=model,
args=args,
train_dataset=train_dataset,
eval_dataset=val_dataset,
compute_metrics=compute_metrics
)
trainer.train()
After tokenization this is how the dataset looks tokenisation
{'input_ids': tensor([ 3800, 9146, 259, 588, 542, 219, 6698, 171, 9146, 259,
588, 542, 402, 12, 312, 587, 745, 14, 3199, 1330,
11, 204, 35, 540, 587, 745, 14, 3199, 1330, 29,
5, 6698, 35, 587, 554, 1233, 15571, 12, 32, 35,
3963, 11, 8338, 542, 1233, 219, 6698, 35, 3963, 402,
16, 32, 35, 1838, 11, 204, 35, 1838, 16, 1,
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'attention_mask': tensor([1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
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'labels': {'input_ids': tensor([9401, 10, 15, 2406, 755, 41, 19, 60, 42, 204, 19, 113,
236, 42, 4, 1, 0, 0, 0, 0, 0, 0, 0, 0,
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0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
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'attention_mask': tensor([1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
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0, 0, 0, 0, 0])}}
When I execute the training command I get the above-mentioned error.
Anyone have an solutions to this. Kind of banging my head on a wall for quite some time now in finding an solution to this.
I am running KMeans on a singular column of a dataset containing the number of employees in companies. The graph of the data looks like this:
graph of dataset.
After looking at this and running KMeans on this particular dataset, it gives an output like this which is clearly not even close to correct:
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2, 2, 2, 2, 2,
2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
The code I've used for this is:
def perform_clustering_oneCol(data):
df2 = data.loc[:,"#Employees"]
print("hi: \n")
print(df2.head(15))
df2.dropna()
df2 = pd.get_dummies(df2)
arr = df2.to_numpy()
km = KMeans(n_clusters=3).fit(arr)
print(km.labels_.tolist())
I'm very new to this and would like to know how to get a more optimal result OR what other algorithms I can look at. Any help would be appreciated. Thanks.
I've tried to build a prediction model that would give me a probability of a person taking medicine given certain conditions. What I'm most interested about is that the model would relatively accurately be able to predict when someone takes medicine. I have a dataframe that has 1400 rows, where about 134 rows are those where the user takes medicine. I have a df that looks somewhat like the example below.
df = pd.DataFrame({'time_hour': ['6', '12', '18'],
'weekday': [6, 1, 3],
'previous_action': ['eat', 'sleep', 'eat'],
'take_medicine': [0, 1, 1]})
I've tried solving this with logistic regression and bernoulli naive bayes, but each of them only bet on the most common outcome, which is the person not taking medicine. I've tried googling how to solve this without success.
I've looked at the data and the person takes medicine daily at 12 and 18, so I'm curious why the results are so bad. Is there another model that would suit this kind of problem better or should I be doing something differently?
Here is an example what I've done previously
predictors = ['time_hour', 'weekday', 'previous_action']
X = df[predictors]
y = df['take_medicine']
X_train,X_test,y_train,y_test=train_test_split(X,y,test_size=0.25,random_state=0)
from sklearn.naive_bayes import BernoulliNB
bert = BernoulliNB()
bert.fit(X_train, y_train)
y_pred = bert.predict(X_test)
y_pred
Which returns
array([0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
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0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
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0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0])
Predicting rare occurrences is called anomaly detection, you can look it up, there are many models that might be useful in your case such as isolation forest that is present in the sklearn library.
I have 250 projects and 50 supervisors. Each of our 130 students rank their preferred choice of projects from 1-5 (1 being favourite) and don't score the other 245. I would like to assign each student to a supervisor but a supervisor can only have up to 12 students.
I'm trying to make some dummy data but struggling to make the cost matrix.
Defining a matrix with random integers of size (5 x 5).
import random
def createMatrix(n):
firstRow = random.sample(range(n),n)
permutes = random.sample(range(n),n)
return list(firstRow[i:]+firstRow[:i] for i in permutes)
N = 5
m = createMatrix(N)
for i in m:
print(i)
[1, 0, 3, 4, 2]
[3, 4, 2, 1, 0]
[4, 2, 1, 0, 3]
[2, 1, 0, 3, 4]
[0, 3, 4, 2, 1]
But this is a Latin square matrix and I would like to allow some rows to contain duplicate values representing that two students have ranked a given same project the same value. Any thoughts would be much appreciated.
You have 130 students and want some duplicated choices. So generate f.e. 110 choices (already minor chance of a duplicate - but with 5 out of 250 not much).
Then choose some of the generated choices as dupe-candidates and and add some of them again until you got back up to 130 choices:
from random import sample,shuffle
projects = 250
students = 130
dup_choices = 20 # means we generate 110 choices and at least 20 will be dupes
per_dup = 5 # add up to this amount of dupes for each dupe candidate
un_duped = students - dup_choices
# random samples
student_choices = [ sample(range(projects), k = 5) for _ in range(un_duped)]
# select dupe candidates
dups = sample(student_choices, k = max(0, dup_choices // per_dup) + 1)
# add enough of each duplicate to statisfy your numbers
for d in dups:
student_choices.extend( (d.copy() for _ in range(per_dup) ) )
# integer rounding + 1 => you will overshoot - so trim back to number of students
student_choices = student_choices[:students]
# mix the dupes into the data
# shuffle(student_choices)
This will generate 130 choices of wich at least 20 are some kind of duplicate of some other.
You create your cost matrix from this data - the position of the projects number inside the students choice is its priority (0 == 1st, 1 = 2nd, ...):
costs = [[0 if pr not in choice else choice.index(pr) + 1
for pr in range(projects)]
for choice in student_choices]
# print first 3 of choices / costs
for sc in student_choices[:3]:
print(sc)
for c in costs[:3]:
print (c)
Output:
[124, 174, 43, 181, 63]
[158, 110, 129, 120, 149]
[226, 238, 183, 249, 90]
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I have a dataset of keywords and clicks.
I'm trying to build a model where it takes in a phrase of keyword ( not more than 5 words, eg: mechanical engineer ) and outputs a value (like clicks, eg: 56). I'm using the bag of words approach which resulted in about 40% accuracy which is not good enough. Can I get some opinions on what approach you would take to improve the accuracy?
Or perhaps my approach is wrong ?
After cleaning,
Here's my code:
words = []
for row in df['Keyword']:
row = nltk.word_tokenize(row)
for i in row:
words.append(i)
words = sorted(list(set(words)))
training = []
for x in df['Keyword']:
bag = []
wrds = nltk.word_tokenize(x)
for w in words:
if w in wrds:
bag.append(1)
else:
bag.append(0)
training.append(bag)
model = keras.Sequential()
inputs = keras.Input(shape=(858,))
x = layers.Embedding(858, 8, input_length=5)(inputs)
x = layers.Flatten()(x)
outputs = layers.Dense(1, activation='relu')(x)
model = keras.Model(inputs=inputs, outputs=outputs, name='my_model')
model.compile(optimizer='adam',loss='mean_squared_error',metrics=['accuracy'])
history = model.fit(X_train, Y_train,
batch_size=50,
epochs=20,
validation_split=0.2,
verbose = 1)
Here's a sample output of my X_train and Y_train.
X_train:
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
Y_train:
257.43
I have about 330k samples.
Any input in appreciated. Thanks
This seems to be a regression problem, not a classification problem.
What does the accuracy of 40% tell you? It tells you that in 40% of the test cases, the network did predict the exact number of clicks, in all the other cases, it did not, even if the number of clicks it predicted is around the right number of clicks. Have a look at this question.
Instead, you should use the error as metric. It tells you how exactly your model can predict the number of clicks, whereas accuracy tells you how often your model predicted the exact number of clicks.
With this in mind, an accuracy of 40% seems pretty high. If you insist of accuracy as a metric, have a look at this.