I'm trying to install the package seen in these places: github, conda-forge, or pypi
So far I've tried a number of commands (NOTE: using windows, and anaconda prompt as administrator. You can see console output I posted here):
pip install git+git://github.com/dls-controls/cothread
conda install cothread
conda install -c conda-forge cothread
conda install -c conda-forge/label/cf202003 cothread
But in all cases, it's either PackagesNotFoundError: The following packages are not available from current channels: or fatal: unable to connect to github.com: github.com[0:140.82.113.3]: errno-Unknown error.
Now, I'm thinking I'll try a manual git clone, then go to the install folder and run pip install setup.py or python setup.py install. (something I think sounds good, but haven't done before) But I'm not sure where the proper place to clone it is. I'd like to add it to my anaconda environment named py310 (it's running 3.10.2). Does pip install automatically move a copy of it for me to the correct location? I want to do this right so that I keep some order to my configuration, and to help ensure that it's minimally confusing should I have to address some version issue in the future.
Thank you for any and all help!
conda 4.2.13
MacOSX 10.12.1
I am trying to install packages from pip to a fresh environment (virtual) created using anaconda. In the Anaconda docs it says this is perfectly fine. It is done the same way as for virtualenv.
Activate the environment where you want to put the program, then pip install a program...
I created an empty environment in Ananconda like this:
conda create -n shrink_venv
Activate it:
source activate shrink_venv
I then can see in the terminal that I am working in my env (shrink_venv). Problem is coming up, when I try to install a package using pip:
(shrink_venv): pip install Pillow
Requirement already satisfied (use --upgrade to upgrade): Pillow in /Library/Python/2.7/site-packages
So I can see it thinks the requirement is satisfied from the system-wide package. So it seems the environment is not working correctly, definitely not like it said in the docs. Am I doing something wrong here?
Just a note, I know you can use conda install for the packages, but I have had an issue with Pillow from anaconda, so I wanted to get it from pip, and since the docs say that is fine.
Output of which -a pip:
/usr/local/bin/pip
/Users/my_user/anaconda/bin/pip
** UPDATE **
I see this is pretty common issue. What I have found is that the conda env doesn't play well with the PYTHONPATH. The system seems to always look in the PYTHONPATH locations even when you're using a conda environment. Now, I always run unset PYTHONPATH when using a conda environment, and it works much better. I'm on a mac.
For others who run into this situation, I found this to be the most straightforward solution:
Run conda create -n venv_name and conda activate venv_name, where venv_name is the name of your virtual environment.
Run conda install pip. This will install pip to your venv directory.
Find your anaconda directory, and find the actual venv folder. It should be somewhere like /anaconda/envs/venv_name/.
Install new packages by doing /anaconda/envs/venv_name/bin/pip install package_name.
This should now successfully install packages using that virtual environment's pip!
All you have to do is open Anaconda Prompt and type
pip install package-name
It will automatically install to the anaconda environment without having to use
conda install package-name
Since some of the conda packages may lack support overtime it is required to install using pip and this is one way to do it
If you have pip installed in anaconda you can run the following in jupyter notebook or in your python shell that is linked to anaconda
pip.main(['install', 'package-name'])
Check your version of pip with pip.__version__. If it is version 10.x.x or above, then install your python package with this line of code
subprocess.check_call([sys.executable, '-m', 'pip', 'install', '--upgrade', 'package-name'])
In your jupyter notebook, you can install python packages through pip in a cell this way;
!pip install package-name
or you could use your python version associated with anaconda
!python3.6 -m pip install package-name
I solved this problem the following way:
If you have a non-conda pip as your default pip but conda python is your default python (as below)
>which -a pip
/home/<user>/.local/bin/pip
/home/<user>/.conda/envs/newenv/bin/pip
/usr/bin/pip
>which -a python
/home/<user>/.conda/envs/newenv/bin/python
/usr/bin/python
Then instead of just calling
pip install <package>, you can use the module flag -m with python so that it uses the anaconda python for the installation
python -m pip install <package>
This installs the package to the anaconda library directory rather than to the library directory associated with (the non-anaconda) pip
EDIT:
The reason this works is as follows:
the command pip references a specific pip file/shortcut (which -a pip tells you which one). Similarly, the command python references a specific python file (which -a python tells you which one). For one reason or another these two commands can become unsynchronized, so that your 'default' pip is in a different folder than your default python, and therefore is associated with a different version of python.
In contrast, the python -m pip construction does not use the shortcut that the pip command points to. Instead, it asks python to find its version of pip and use that version to install a package.
This is what worked for me (Refer to image linked)
Open Anaconda
Select Environments in the left hand pane below home
Just to the right of where you selected and below the "search environments" bar, you should see base(root). Click on it
A triangle pointing right should appear, click on it an select "open terminal"
Use the regular pip install command here. There is no need to point to an environment/ path
For future reference, you can find the folder your packages are downloading to if you happen to have a requirement already satisfied. You can see it if you scroll up in the terminal. It should read something like: requirement already satisfied and then the path
[]
If you didn't add pip when creating conda environment
conda create -n env_name pip
and also didn't install pip inside the environment
source activate env_name
conda install pip
then the only pip you got is the system pip, which will install packages globally.
Bus as you can see in this issue, even if you did either of the procedure mentioned above, the behavior of pip inside conda environment is still kind of undefined.
To ensure using the pip installed inside conda environment without having to type the lengthy /home/username/anaconda/envs/env_name/bin/pip, I wrote a shell function:
# Using pip to install packages inside conda environments.
cpip() {
ERROR_MSG="Not in a conda environment."
ERROR_MSG="$ERROR_MSG\nUse \`source activate ENV\`"
ERROR_MSG="$ERROR_MSG to enter a conda environment."
[ -z "$CONDA_DEFAULT_ENV" ] && echo "$ERROR_MSG" && return 1
ERROR_MSG='Pip not installed in current conda environment.'
ERROR_MSG="$ERROR_MSG\nUse \`conda install pip\`"
ERROR_MSG="$ERROR_MSG to install pip in current conda environment."
[ -e "$CONDA_PREFIX/bin/pip" ] || (echo "$ERROR_MSG" && return 2)
PIP="$CONDA_PREFIX/bin/pip"
"$PIP" "$#"
}
Hope this is helpful to you.
python -m pip install Pillow
Will use pip of current Python activated with
source activate shrink_venv
For those wishing to install a small number of packages in conda with pip then using,
sudo $(which pip) install <instert_package_name>
worked for me.
Explainaton
It seems, for me anyway, that which pip is very reliable for finding the conda env pip path to where you are. However, when using sudo, this seems to redirect paths or otherwise break this.
Using the $(which pip) executes this independently of the sudo or any of the commands and is akin to running /home/<username>/(mini)conda(3)/envs/<env_name>/pip in Linux. This is because $() is run separately and the text output added to the outer command.
All above answers are mainly based on use of virtualenv. I just have fresh installation of anaconda3 and don't have any virtualenv installed in it. So, I have found a better alternative to it without wondering about creating virtualenv.
If you have many pip and python version installed in linux, then first run below command to list all installed pip paths.
whereis pip
You will get something like this as output.
pip: /usr/bin/pip /home/prabhakar/anaconda3/bin/pip /usr/share/man/man1/pip.1.gz
Copy the path of pip which you want to use to install your package and paste it after sudo replacing /home/prabhakar/anaconda3/bin/pip in below command.
sudo /home/prabhakar/anaconda3/bin/pip install <package-name>
This worked pretty well for me. If you have any problem installing, please comment.
if you're using windows OS open Anaconda Prompt and type activate yourenvname
And if you're using mac or Linux OS open Terminal and type source activate yourenvname
yourenvname here is your desired environment in which you want to install pip package
after typing above command you must see that your environment name is changed from base to your typed environment yourenvname in console output (which means you're now in your desired environment context)
Then all you need to do is normal pip install command e.g pip install yourpackage
By doing so, the pip package will be installed in your Conda environment
I see a lot of good answers here but still wanted to share mine that worked for me especially if you are switching from pip-era to conda-era. By following this, you can install any packages using both conda and pip.
Background
PIP - Python package manager only
Conda - Both package and environment manager for many languages including Python
Install Pip by default every time you create a new conda environment
# this installs pip for your newly created environment
conda create -n my_new_env pip
# activate your new conda environment
conda activate my_new_env
# now you can install any packages using both conda and pip
conda install package_name
#or
pip install package_name
This gives you the flexibility to install any packages in conda environment even if they are not available in conda (e.g. wordcloud)
conda activate my_new_env
# will not work as wordcloud is not available in conda
conda install wordcloud
# works fine
pip install wordcloud
I was facing a problem in installing a non conda package on anaconda, I followed the most liked answer here and it didn't go well (maybe because my anaconda is in F directory and env created was in C and bin folder was not created, I have no idea but it didn't work).
According to anaconda pip is already installed ( which is found using the command "conda list" on anaconda prompt), but pip packages were not getting installed so here is what I did, I installed pip again and then pip installed the package.
conda install pip
pip install see
see is a non-conda package.
Depends on how did you configure your PATH environmental variable.
When your shell resolves the call to pip, which is the first bin it will find?
(test)$ whereis pip
pip: /home/borja/anaconda3/envs/test/bin/pip /home/borja/anaconda3/bin/pip
Make sure the bin folder from your anaconda installation is before /usr/lib (depending on how you did install pip). So an example:
(test) borja#xxxx:~$ pip install djangorestframework
....
Successfully installed asgiref-3.2.3 django-3.0.3 djangorestframework-3.11.0 pytz-2019.3 sqlparse-0.3.1
(test) borja#xxxx:~$ conda list | grep django
django 3.0.3 pypi_0 pypi
djangorestframework 3.11.0 pypi_0 pypi
We can see the djangorestframework was installed in my test environment but if I check my base:
(base) borja#xxxx:~$ conda list | grep django
It is empty.
Personally I like to handle all my PATH configuration using .pam_environment, here an example:
(base) borja#xxxx:~$ cat .pam_environment
PATH DEFAULT=/home/#{PAM_USER}/anaconda3/bin:${PATH}
One extra commet. The way how you install pip might create issues:
You should use: conda install pip --> new packages installed with pip will be added to conda list.
You shodul NOT use: sudo apt install python3-pip --> new packages will not be added to conda list (so are not managed by conda) but you will still be able to use them (chance of conflict).
Well I tried all the above methods. None worked for me because of an issue with the proxy settings within the corporate environment. Luckily I could open the pypi website from the browser. In the end, the following worked for me:
Activate your environment
Download the .whl package manually from
https://pypi.org/simple/<package_name>/
Navigate to the folder where you have downloaded the .whl from the command line with your environment activated
perform:
pip install package_name_whatever.whl
If you ONLY want to have a conda installation. Just remove all of the other python paths from your PATH variable.
Leaving only:
C:\ProgramData\Anaconda3
C:\ProgramData\Anaconda3\Scripts
C:\ProgramData\Anaconda3\Library\bin
This allows you to just use pip install * and it will install straight into your conda installation.
I know the original question was about conda under MacOS. But I would like to share the experience I've had on Ubuntu 20.04.
In my case, the issue was due to an alias defined in ~/.bashrc: alias pip='/usr/bin/pip3'. That alias was taking precedence on everything else.
So for testing purposes I've removed the alias running unalias pip command. Then the corresponding pip of the active conda environment has been executed properly.
The same issue was applicable to python command.
Given the information described in this Anaconda blog post, I think the best practice would be to create an environment file so that your conda environments can be created predictably.
I tried a few of the answers posted here without success and I didn't feel like messing around with python paths etc. Instead, I added an environment.yml file similar to this:
name: your-environment-name
channels:
- defaults
dependencies:
- python=3.9.12
- requests=2.28.1
- pandas=1.4.4
- pip=21.2.4
- pip:
- python-dotenv==0.19.2
This guarantees that you install all conda dependencies first, then install pip in the conda environment and use it to install dependencies that are unavailable through conda. This is predictable, reusable, and follows the advice described in the blog post.
You then create a new conda environment using the file with this command:
conda env create -f environment.yml
Uninstall the duplicated python installation. Just keep anaconda and create an env with the desired python version as specified here: https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-python.html. Then your python and pip versions will change as you switch between envs.
I've looked at this answer and many other answers for hours today and couldn't figure this out with 30 years programming experience.
I ran:
conda create -n myenv python=3.9
conda activate myenv
and could not use pip. However, in another environment such as myenv2, myenv3, myenv4 it worked.
I was obtaining the dreaded urllib3 httpsconnection error.
So thought it has to be a missing urllib3 error or something else. It turns out that it was much more sinister than that. Unfortunately it works in other environments and for me I thought that it was related to the fact I'm using Debian on Windows 10 with WSL2. The fix was simple:
rm -rf $HOME/.cache
The pip cache was mangled from a previous install of the same environment. Probably due to the fact I had run an update on conda base and done a distribution upgrade. Because I'm wanting to run a production system with apache2 using a WSGI environment with flask, I want to always have the same conda instance name. So this was a must fix!
I have installed mapnik 3.0.12 with conda install -c mrterry mapnik, but why I can`t import it in my code?
import mapnik
ModuleNotFoundError: No module named 'mapnik'
I looked in anaconda3/pkgs/mapnik-3.0.12-0/lib and there is no python3.7 folder there, only .so and .a files.
I have installed mapnik with sudo apt install python3-mapnik in ubuntu 18.04 and it imports well with /usr/bin/python3 interpreter. And in directory /usr/lib/python3/dist-packages/mapnik there is some .py files.
I'm not familiar with the tool, but it looks like Mapnik is a C++ library that has separate Python bindings. You need to install both mapnik and python-mapnik. Only Python 2 is supported, so you need to create a new env for this.
Conda (only if you trust the channel)
A search of Anaconda Cloud shows only linux-64 platform is available and only from user channels. I'm following your lead on using the mrterry channel, but generally I will only use a channel if I trust the user/org.
conda create -n myenv -c mrterry python=2.7 mapnik python-mapnik
Recommended Approach
Since I don't recognize any of the channels in the search, personally I would just follow the official install instructions. First, I would set up a Conda env with Python 2.7 and the dependencies that Mapnik lists. Then activate that env, and proceed with following the instructions (./configure, make, etc.).
I installed anaconda2-4.4.0 in path /opt/anaconda and add it as my Pycharm interpreter and all things went well until I needed to install non-conda python package in this link. I installed it using pip command and it was in my Python packages using command pip list, But the problem is that package was not included in Conda, as I checked using command conda list and I couldn't import it in my project that uses anaconda as Python interpreter as well.
I try installing my package offline using command conda install --offline Downloads/hazm-master.tar.bz2, But it was errorful.
KeyError: Dist(_Dist__initd=True, channel=u'<unknown>', dist_name=u'hazm-master', name=u'hazm', version=u'master', build_string=u'', build_number=0, with_features_depends=None, base_url=u'file:///home/soheil/Downloads', platform=None)
How can I add my desired package on anaconda packages?
You need to call pip to do that. So what should work is
Conda.add("pip")
pip = joinpath(Conda.BINDIR, "pip")
run(`$pip install -e 'git+https://github.com/sobhe/hazm`)
On windows is might be
pip = joinpath(Conda.SCRIPTDIR, "pip")
# On UNIX, Conda.SCRIPTDIR == Conda.BINDIR
EDIT
However; You can also catch up this link to install the non-conda packages(Thanks to #Sraw's assistance)
I am trying to install python-qutip to run on IPython notebook, which I have configured to run using the conda path variables . Qutip is an extremely popular (and useful) open-source package to simulate open quantum suystems.
With
conda install python-qutip
or
pip-install python-qutip
I get Error: No packages found matching: python-qutip (as expected). Same thing with
pip install python-qutip
As a quick 'n dirty solution, Is there some way to add the jrjohansson/qutip-releases repository to my conda library?
Alternatively, is it possible to install manually as in: sudo python setup.py install and add the installation directory to the conda path?
I figure you've probably solved this at this point but for any wandering search-engine travelers:
In addition to specifying a channel for a singular install, anaconda's docs give this method for adding a channel to your user's conda config(with conda>=4.1):
conda config --add channels new_channel
You can also see the channels you currently have added in ~/.condarc or by running conda config --show
For this particular case, you might do something like:
conda config --add channels jrjohansson
conda install python-qutip
If you're installing packages from a particular channel frequently(e.g. from conda-forge), this can be pretty useful.
Hope it helps :)
If you search anaconda.com you find the following:
Using binstar api site https://api.anaconda.org
Name: qutip
Summary: QuTiP: The Quantum Toolbox in Python
Access: public
Package Types: conda
Versions:
+ 3.0.1
+ 3.0.0
+ 3.1.0
To install this package with conda run:
conda install --channel https://conda.anaconda.org/jrjohansson qutip
The last line works for me (OpenSuse 13.1, miniconda).
I think the easiest way to install qutip is the following
pip install qutip
This worked for me.
(It could be pip3 install qutip instead.)
Assuming you have conda-build installed, you can try building the conda recipe (currently on a fork):
git clone https://github.com/jrjohansson/conda-recipes.git
cd conda-recipes
conda build qutip
conda install --use-local qutip
Didn't work for my env (ubuntu saucy) but I didn't try too hard. Maybe it will work for you!