I got error when installing spacy with pip (under mac python3). Following is the last part of the error report. It seams that there are much error. How can i fix it? I have installed gcc.
gcc: warning: x86_64 conflicts with i386 (arch flags ignored)
cc1plus: warning: command line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
g++-4.2 -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -g build/temp.macosx-10.6-intel-3.6/thinc/linalg.o -o build/lib.macosx-10.6-intel-3.6/thinc/linalg.cpython-36m-darwin.so
unable to execute 'g++-4.2': No such file or directory
error: command 'g++-4.2' failed with exit status 1
.......
/usr/local/bin/gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/private/var/folders/md/8kgtqqz12j94hbcvhqz0w7gw0000gp/T/pip-build-sm84mnwa/murmurhash/murmurhash/include -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c murmurhash/mrmr.cpp -o build/temp.macosx-10.6-intel-3.6/murmurhash/mrmr.o -O3 -Wno-strict-prototypes -Wno-unused-function
gcc: warning: x86_64 conflicts with i386 (arch flags ignored)
gcc: error: murmurhash/mrmr.cpp: No such file or directory
gcc: fatal error: no input files
compilation terminated.
error: command '/usr/local/bin/gcc' failed with exit status 1
----------------------------------------
Command
"/Library/Frameworks/Python.framework/Versions/3.6/bin/python3.6 -u -c
"import setuptools,
tokenize;file='/private/var/folders/md/8kgtqqz12j94hbcvhqz0w7gw0000gp/T/pip-build-sm84mnwa/murmurhash/setup.py';f=getattr(tokenize,
'open', open)(file);code=f.read().replace('\r\n',
'\n');f.close();exec(compile(code, file, 'exec'))" install
--record /var/folders/md/8kgtqqz12j94hbcvhqz0w7gw0000gp/T/pip-4_7dl2wl-record/install-record.txt
--single-version-externally-managed --compile" failed with error code 1 in
/private/var/folders/md/8kgtqqz12j94hbcvhqz0w7gw0000gp/T/pip-build-sm84mnwa/murmurhash/
I'm really not sure if this is related or not but I saw a discussion this morning that said that the latest macOS upgrade (Catalina) drops support for 32-bit applications altogether. The reason I mention it is because the x86_64 conflicts with i386 could be referencing the 32-bit/64-bit problem.
Have you recently upgraded your Mac OS? And if so, maybe you need to upgrade your dependencies to 64-bit equivalents?
Related
I'm configuring a virtualenv to work with a legacy webservices application developed on python using flask microframework and PostgreSQLdatabase, this application use PyGreSQL 5.0.3 as a dependency to connect with the database.
I have installed the PostgreSQL 9.6.1, i installed it using:
brew install postgresql
I have installed and working with Python 2.7
When i run the
pip install -r requirements.txt
i'm gettin this error message:
Running setup.py install for PyGreSQL ... error
Complete output from command /Users/user/Development/Projects/flask/ws/myenv/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/t1/x7lrbmyd3lq0k8ngknwg1zx00000gn/T/pip-build-KjQgiU/PyGreSQL/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /var/folders/t1/x7lrbmyd3lq0k8ngknwg1zx00000gn/T/pip-3lBp1N-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/user/Development/Projects/flask/ws/myenv/include/site/python2.7/PyGreSQL:
running install
running build
running build_py
creating build
creating build/lib.macosx-10.12-intel-2.7
copying pg.py -> build/lib.macosx-10.12-intel-2.7
copying pgdb.py -> build/lib.macosx-10.12-intel-2.7
running build_ext
building '_pg' extension
creating build/temp.macosx-10.12-intel-2.7
cc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -arch i386 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch i386 -pipe -DPYGRESQL_VERSION=5.0.3 -DDIRECT_ACCESS -DLARGE_OBJECTS -DDEFAULT_VARS -DESCAPING_FUNCS -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/usr/local/Cellar/postgresql/9.6.1/include -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c pgmodule.c -o build/temp.macosx-10.12-intel-2.7/pgmodule.o -O2 -funsigned-char -Wall -Werror
pgmodule.c:4143:9: error: implicit conversion loses integer precision: 'long' to 'int' [-Werror,-Wshorten-64-to-32]
num = PyInt_AsLong(param);
~ ^~~~~~~~~~~~~~~~~~~
pgmodule.c:4448:12: error: implicit conversion loses integer precision: 'long' to 'int' [-Werror,-Wshorten-64-to-32]
pgport = PyInt_AsLong(pg_default_port);
~ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2 errors generated.
error: command 'cc' failed with exit status 1
----------------------------------------
As you can see, this error is derived from compile and build the package, but I have the postgresql library installed, which I see as the common problem in other cases. On the other hand I have installed the command line tools of mac, i changed my compiler from cc to gcc and i'm having the same error
Any idea how to solve it, thank you in advance
I wasn't able to install any version of this package normally. It's probably a problem with the package.
Workaround: If you turn off warn-as-error, it should compile fine.
export CFLAGS="-Wno-error"
pip install PyGreSQL
I cannot get pillow installed.
(env)noah:cupalensic2 broinjc$ which cc
/usr/bin/cc
(env)noah:cupalensic2 broinjc$ cc --version
Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
Target: x86_64-apple-darwin13.1.0
Thread model: posix
I ran pip install mezzanine and when it got to satisfying pillow it screwed up...
cc -fno-strict-aliasing -fno-common -dynamic -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -mno-fused-madd -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -pipe -arch x86_64 -DHAVE_LIBZ -I/System/Library/Frameworks/Tcl.framework/Versions/8.5/Headers -I/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I/opt/X11/include/freetype2 -I/Users/broinjc/cupalensic2/env/build/pillow/libImaging -I/Users/broinjc/cupalensic2/env/include -I/usr/local/include -I/opt/X11/include -I/usr/include -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c _imaging.c -o build/temp.macosx-10.9-intel-2.7/_imaging.o
clang: error: unknown argument: '-mno-fused-madd' [-Wunused-command-line-argument-hard-error-in-future]
clang: note: this will be a hard error (cannot be downgraded to a warning) in the future
error: command 'cc' failed with exit status 1
----------------------------------------
Cleaning up...
Command /Users/broinjc/cupalensic2/env/bin/python -c "import setuptools;__file__='/Users/broinjc/cupalensic2/env/build/pillow/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/lg/y_cwnrnd3rn4x_j1sbd1mg_h0000gn/T/pip-o0HQHe-record/install-record.txt --single-version-externally-managed --install-headers /Users/broinjc/cupalensic2/env/include/site/python2.7 failed with error code 1 in /Users/broinjc/cupalensic2/env/build/pillow
Storing complete log in /Users/broinjc/.pip/pip.log
Any idea what might be going on here?
This is a known issue with OSX and recent Xcode upgrade.
Instructions how to avoid the issue are here:
Ansible Installation -clang: error: unknown argument: '-mno-fused-madd'
This should do the trick::
ARCHFLAGS=-Wno-error=unused-command-line-argument-hard-error-in-future pip install Pillow
I was trying to install python package scikit-learn. I keep get an error.
I tried
pip install scikit-learn
The error looks like following. What is the problem of my installation?
compile options: '-I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include -c'
c++: sklearn/svm/src/libsvm/libsvm_template.cpp
clang: error: unknown argument: '-mno-fused-madd' [-Wunused-command-line-argument-hard-error-in-future]
clang: note: this will be a hard error (cannot be downgraded to a warning) in the future
clang: error: unknown argument: '-mno-fused-madd' [-Wunused-command-line-argument-hard-error-in-future]
clang: note: this will be a hard error (cannot be downgraded to a warning) in the future
error: Command "c++ -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -arch i386 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -mno-fused-madd -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch i386 -pipe -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include -c sklearn/svm/src/libsvm/libsvm_template.cpp -o build/temp.macosx-10.9-intel-2.7/sklearn/svm/src/libsvm/libsvm_template.o" failed with exit status 1
----------------------------------------
Cleaning up...
Command /usr/bin/python -c "import setuptools, tokenize;__file__='/private/tmp/pip_build_root/scikit-learn/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-GYuqQN-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /private/tmp/pip_build_root/scikit-learn
Storing debug log for failure in /Users/johnkuk/Library/Logs/pip.log
I also tried several different ways to install the package. From easy_install, I also got following error message.
clang: error: unknown argument: '-mno-fused-madd' [-Wunused-command-line-argument-hard-error-in-future]
clang: note: this will be a hard error (cannot be downgraded to a warning) in the future
clang: error: unknown argument: '-mno-fused-madd' [-Wunused-command-line-argument-hard-error-in-future]
clang: note: this will be a hard error (cannot be downgraded to a warning) in the future
error: Setup script exited with error: Command "c++ -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -arch i386 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -mno-fused-madd -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch i386 -pipe -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include -c /private/tmp/easy_install-oD3dwa/scikit-learn-0.14.1/sklearn/svm/src/libsvm/libsvm_template.cpp -o build/temp.macosx-10.9-intel-2.7/private/tmp/easy_install-oD3dwa/scikit-learn-0.14.1/sklearn/svm/src/libsvm/libsvm_template.o" failed with exit status 1
/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/distutils/misc_util.py:252: RuntimeWarning: Parent module 'numpy.distutils' not found while handling absolute import
from numpy.distutils import log
I had the same trouble today, after trying many things the one that worked me was setting some environment variables before installing with pip resolved the issue for me:
export CFLAGS=-Qunused-arguments
export CPPFLAGS=-Qunused-arguments
And then install with sudo:
sudo -E pip install -U scikit-learn
it's seems to be a problem with xcode update (5.1.1 for me), it does not accept '-mno-fused-madd' as an argument, before it threw it a warning, know is an error, the first two commands ignore the unused arguments witch are the same that throw the error.
Hope it helps, any comments/corrections are welcome.
thanks in advance for any help!
I'm trying to install a set of Python 2.7.5 libraries using Pip 1.5.2. I'm following the directions to install NuPIC on my mac (OS X Mavericks).
Everything was going fine until I ran this line:
sudo pip install --allow-all-external --allow-unverified PIL --allow-unverified psutil -r $NUPIC/external/common/requirements.txt
I got this error:
building '_imagingft' extension
cc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -arch i386 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -mno-fused-madd -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch i386 -pipe -I/System/Library/Frameworks/Tcl.framework/Headers -I/System/Library/Frameworks/Tk.framework/Headers -I/usr/local/include/freetype2 -IlibImaging -I/System/Library/Frameworks/Python.framework/Versions/2.7/include -I/usr/local/include -I/usr/include -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c _imagingft.c -o build/temp.macosx-10.9-intel-2.7/_imagingft.o
clang: warning: argument unused during compilation: '-mno-fused-madd'
_imagingft.c:73:10: fatal error: 'freetype/fterrors.h' file not found
#include <freetype/fterrors.h>
^
1 error generated.
error: command 'cc' failed with exit status 1
----------------------------------------
Cleaning up...
Command /usr/bin/python -c "import setuptools, tokenize;__file__='/private/tmp/pip_build_root/PIL/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-vJHHeE-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /private/tmp/pip_build_root/PIL
Storing debug log for failure in /Users/aaronclaytondunn/Library/Logs/pip.log
And here's the requirements file ($NUPIC/external/common/requirements.txt):
#See http://www.pip-installer.org/en/latest/requirements.html for details
asteval==0.9.1
mock==1.0.1
ordereddict==1.1
PIL==1.1.7
psutil==1.0.1
pylint==0.28.0
pytest==2.4.2
pytest-cov==1.6
pytest-xdist==1.8
python-dateutil==2.1
PyYAML==3.10
unittest2==0.5.1
validictory==0.9.1
PyMySQL==0.5
DBUtils==1.1
numpy==1.7.1
tweepy==2.1
It was chugging along well for a while, so I assume it successfully installed some of the libraries and broke on one. Any ideas what's going wrong?
The "Linked" question here Error installing Python Image Library using pip on Mac OS X 10.9 answers this issue (the top up-voted answer). Basically PIL doesn't install freetype headers properly any more. You need to link the new location to /usr/include/freetype.
fterrors.h
file was missed in your path. You can explicitely download and place this file in the appropriate directory.
You might need to install freetype.
brew install freetype
I am attempting to install pycrypto (version 2.3) on OS X via pip. I am getting a "Broken pipe" error when the compiler attempts to compile MD2.c. I get a very similar error when using easy_install.
Here is the error that I am getting:
bash-3.2$
bash-3.2$ sudo pip install pycrypto
Password:
Downloading/unpacking pycrypto
Running setup.py egg_info for package pycrypto
Installing collected packages: pycrypto
Running setup.py install for pycrypto
warning: GMP library not found; Not building Crypto.PublicKey._fastmath.
building 'Crypto.Hash.MD2' extension
gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -fwrapv -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch i386 -arch ppc -arch x86_64 -pipe -std=c99 -O3 -fomit-frame-pointer -Isrc/ -I/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c src/MD2.c -o build/temp.macosx-10.6-universal-2.6/src/MD2.o
/usr/libexec/gcc/powerpc-apple-darwin10/4.2.1/as: assembler (/usr/bin/../libexec/gcc/darwin/ppc/as or /usr/bin/../local/libexec/gcc/darwin/ppc/as) for architecture ppc not installed
Installed assemblers are:
/usr/bin/../libexec/gcc/darwin/x86_64/as for architecture x86_64
/usr/bin/../libexec/gcc/darwin/i386/as for architecture i386
src/MD2.c:134: fatal error: error writing to -: Broken pipe
compilation terminated.
lipo: can't open input file: /var/tmp//cc47qHNI.out (No such file or directory)
error: command 'gcc-4.2' failed with exit status 1
Complete output from command /usr/bin/python -c "import setuptools;__file__='/Users/damusin/tmp/pycrypto/pycrypto-2.3/build/pycrypto/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --single-version-externally-managed --record /tmp/pip-W6xQ61-record/install-record.txt:
running install
running build
running build_py
running build_ext
warning: GMP library not found; Not building Crypto.PublicKey._fastmath.
building 'Crypto.Hash.MD2' extension
gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -fwrapv -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch i386 -arch ppc -arch x86_64 -pipe -std=c99 -O3 -fomit-frame-pointer -Isrc/ -I/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c src/MD2.c -o build/temp.macosx-10.6-universal-2.6/src/MD2.o
/usr/libexec/gcc/powerpc-apple-darwin10/4.2.1/as: assembler (/usr/bin/../libexec/gcc/darwin/ppc/as or /usr/bin/../local/libexec/gcc/darwin/ppc/as) for architecture ppc not installed
Installed assemblers are:
/usr/bin/../libexec/gcc/darwin/x86_64/as for architecture x86_64
/usr/bin/../libexec/gcc/darwin/i386/as for architecture i386
src/MD2.c:134: fatal error: error writing to -: Broken pipe
compilation terminated.
lipo: can't open input file: /var/tmp//cc47qHNI.out (No such file or directory)
error: command 'gcc-4.2' failed with exit status 1
----------------------------------------
Command /usr/bin/python -c "import setuptools;__file__='/Users/damusin/tmp/pycrypto/pycrypto-2.3/build/pycrypto/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --single-version-externally-managed --record /tmp/pip-W6xQ61-record/install-record.txt failed with error code 1
Storing complete log in /Users/admin/.pip/pip.log
bash-3.2$
bash-3.2$
I attempted to install this package using mac ports with the command "sudo port install py26-crypto", and looks to install smoothly but then it tells me that the pycrypto package is missing when running the command "fab" (Fabric).
I attempted using the "ARCHFLAGS" command recommended in answer by YH Wong here but no luck:
https://superuser.com/questions/259278/python-2-6-1-pycrypto-2-3-pypi-package-broken-pipe-during-build
I am using Mac OS X 10.6.7 with python 2.6.6 and XCode is installed.
If you have installed Xcode 4, try setting ARCHFLAGS before calling pip or easy_install:
sudo bash
export ARCHFLAGS='-arch i386 -arch x86_64'
pip ...
The problem is that Xcode 4 has removed support for -arch ppc but the system Python 2.6 on Mac OS X 10.6 expects to build universal C extension modules with all three architectures. And if you define the environment variable prior to the sudo command, it will likely not be exported through to the sudo environment.
Xcode 5.1
ARCHFLAGS=-Wno-error=unused-command-line-argument-hard-error-in-future pip2.7 install pycrypto