Creating a grid of squares (patches) in matplotlib - python

I'm trying to generate a grid of squares with a small offset between each and thought I would use my superior matplotlib skills. Unfortunately the output only shows one square, so I suspect that the matplotlib isn't getting the message to plot all the patch objects I am initializing, but despite much trawling of stackoverflow I cannot fix this issue.
import numpy as np
import matplotlib.pyplot as plt
import matplotlib.patches as patches
import matplotlib.collections as coll
wid = 1
hei = 1
nrows = 5
ncols = 7
inbetween = 0.1
xx = np.arange(0, ncols, (wid+inbetween))
yy = np.arange(0, nrows, (hei+inbetween))
fig = plt.figure()
ax = plt.subplot(111, aspect='equal')
pat = []
for xi in xx:
for yi in yy:
sq = patches.Rectangle((xi, yi), wid, hei, fill=True)
ax.add_patch(sq)
pc = coll.PatchCollection(pat)
ax.add_collection(pc)
plt.axis('off')
plt.show()
plt.savefig('test.png', dpi=90)
Any ideas as to what is going wrong?

There are two issues here. First, you only see (part of) one patch here, because the axes go from 0 to 1 and not up to ncols and nrows.
This can be counteracted by relimiting the axes
ax.relim()
ax.autoscale_view()
or by setting the limis manually, e.g. ax.axis([0,ncols+1,0,nrows+1]).
Second, the PatchCollection is not doing anything, because an empty list (pat=[]) is added to it. Either delete the two lines
pc = coll.PatchCollection(pat)
ax.add_collection(pc)
or replace ax.add_patch(sq) by pat.append(sq). Note that relim() does not work when using the PatchCollection and manually relimitting the axes would be required.

Related

Custom "multicolored lines" in matplotlib [duplicate]

I have two list as below:
latt=[42.0,41.978567980875397,41.96622693388357,41.963791391892457,...,41.972407378075879]
lont=[-66.706920989908909,-66.703116557977069,-66.707351643324543,...-66.718218142021925]
now I want to plot this as a line, separate each 10 of those 'latt' and 'lont' records as a period and give it a unique color.
what should I do?
There are several different ways to do this. The "best" approach will depend mostly on how many line segments you want to plot.
If you're just going to be plotting a handful (e.g. 10) line segments, then just do something like:
import numpy as np
import matplotlib.pyplot as plt
def uniqueish_color():
"""There're better ways to generate unique colors, but this isn't awful."""
return plt.cm.gist_ncar(np.random.random())
xy = (np.random.random((10, 2)) - 0.5).cumsum(axis=0)
fig, ax = plt.subplots()
for start, stop in zip(xy[:-1], xy[1:]):
x, y = zip(start, stop)
ax.plot(x, y, color=uniqueish_color())
plt.show()
If you're plotting something with a million line segments, though, this will be terribly slow to draw. In that case, use a LineCollection. E.g.
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.collections import LineCollection
xy = (np.random.random((1000, 2)) - 0.5).cumsum(axis=0)
# Reshape things so that we have a sequence of:
# [[(x0,y0),(x1,y1)],[(x0,y0),(x1,y1)],...]
xy = xy.reshape(-1, 1, 2)
segments = np.hstack([xy[:-1], xy[1:]])
fig, ax = plt.subplots()
coll = LineCollection(segments, cmap=plt.cm.gist_ncar)
coll.set_array(np.random.random(xy.shape[0]))
ax.add_collection(coll)
ax.autoscale_view()
plt.show()
For both of these cases, we're just drawing random colors from the "gist_ncar" coloramp. Have a look at the colormaps here (gist_ncar is about 2/3 of the way down): http://matplotlib.org/examples/color/colormaps_reference.html
Copied from this example:
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.collections import LineCollection
from matplotlib.colors import ListedColormap, BoundaryNorm
x = np.linspace(0, 3 * np.pi, 500)
y = np.sin(x)
z = np.cos(0.5 * (x[:-1] + x[1:])) # first derivative
# Create a colormap for red, green and blue and a norm to color
# f' < -0.5 red, f' > 0.5 blue, and the rest green
cmap = ListedColormap(['r', 'g', 'b'])
norm = BoundaryNorm([-1, -0.5, 0.5, 1], cmap.N)
# Create a set of line segments so that we can color them individually
# This creates the points as a N x 1 x 2 array so that we can stack points
# together easily to get the segments. The segments array for line collection
# needs to be numlines x points per line x 2 (x and y)
points = np.array([x, y]).T.reshape(-1, 1, 2)
segments = np.concatenate([points[:-1], points[1:]], axis=1)
# Create the line collection object, setting the colormapping parameters.
# Have to set the actual values used for colormapping separately.
lc = LineCollection(segments, cmap=cmap, norm=norm)
lc.set_array(z)
lc.set_linewidth(3)
fig1 = plt.figure()
plt.gca().add_collection(lc)
plt.xlim(x.min(), x.max())
plt.ylim(-1.1, 1.1)
plt.show()
See the answer here to generate the "periods" and then use the matplotlib scatter function as #tcaswell mentioned. Using the plot.hold function you can plot each period, colors will increment automatically.
Cribbing the color choice off of #JoeKington,
import numpy as np
import matplotlib.pyplot as plt
def uniqueish_color(n):
"""There're better ways to generate unique colors, but this isn't awful."""
return plt.cm.gist_ncar(np.random.random(n))
plt.scatter(latt, lont, c=uniqueish_color(len(latt)))
You can do this with scatter.
I have been searching for a short solution how to use pyplots line plot to show a time series coloured by a label feature without using scatter due to the amount of data points.
I came up with the following workaround:
plt.plot(np.where(df["label"]==1, df["myvalue"], None), color="red", label="1")
plt.plot(np.where(df["label"]==0, df["myvalue"], None), color="blue", label="0")
plt.legend()
The drawback is you are creating two different line plots so the connection between the different classes is not shown. For my purposes it is not a big deal. It may help someone.

Adding a colorbar to pyplot [duplicate]

I have a sequence of line plots for two variables (x,y) for a number of different values of a variable z. I would normally add the line plots with legends like this:
import matplotlib.pyplot as plt
fig = plt.figure()
ax = fig.add_subplot(111)
# suppose mydata is a list of tuples containing (xs, ys, z)
# where xs and ys are lists of x's and y's and z is a number.
legns = []
for(xs,ys,z) in mydata:
pl = ax.plot(xs,ys,color = (z,0,0))
legns.append("z = %f"%(z))
ax.legends(legns)
plt.show()
But I have too many graphs and the legends will cover the graph. I'd rather have a colorbar indicating the value of z corresponding to the color. I can't find anything like that in the galery and all my attempts do deal with the colorbar failed. Apparently I must create a collection of plots before trying to add a colorbar.
Is there an easy way to do this? Thanks.
EDIT (clarification):
I wanted to do something like this:
import matplotlib.pyplot as plt
import matplotlib.cm as cm
fig = plt.figure()
ax = fig.add_subplot(111)
mycmap = cm.hot
# suppose mydata is a list of tuples containing (xs, ys, z)
# where xs and ys are lists of x's and y's and z is a number between 0 and 1
plots = []
for(xs,ys,z) in mydata:
pl = ax.plot(xs,ys,color = mycmap(z))
plots.append(pl)
fig.colorbar(plots)
plt.show()
But this won't work according to the Matplotlib reference because a list of plots is not a "mappable", whatever this means.
I've created an alternative plot function using LineCollection:
def myplot(ax,xs,ys,zs, cmap):
plot = lc([zip(x,y) for (x,y) in zip(xs,ys)], cmap = cmap)
plot.set_array(array(zs))
x0,x1 = amin(xs),amax(xs)
y0,y1 = amin(ys),amax(ys)
ax.add_collection(plot)
ax.set_xlim(x0,x1)
ax.set_ylim(y0,y1)
return plot
xs and ys are lists of lists of x and y coordinates and zs is a list of the different conditions to colorize each line. It feels a bit like a cludge though... I thought that there would be a more neat way to do this. I like the flexibility of the plt.plot() function.
(I know this is an old question but...) Colorbars require a matplotlib.cm.ScalarMappable, plt.plot produces lines which are not scalar mappable, therefore, in order to make a colorbar, we are going to need to make a scalar mappable.
Ok. So the constructor of a ScalarMappable takes a cmap and a norm instance. (norms scale data to the range 0-1, cmaps you have already worked with and take a number between 0-1 and returns a color). So in your case:
import matplotlib.pyplot as plt
sm = plt.cm.ScalarMappable(cmap=my_cmap, norm=plt.normalize(min=0, max=1))
plt.colorbar(sm)
Because your data is in the range 0-1 already, you can simplify the sm creation to:
sm = plt.cm.ScalarMappable(cmap=my_cmap)
EDIT: For matplotlib v1.2 or greater the code becomes:
import matplotlib.pyplot as plt
sm = plt.cm.ScalarMappable(cmap=my_cmap, norm=plt.normalize(vmin=0, vmax=1))
# fake up the array of the scalar mappable. Urgh...
sm._A = []
plt.colorbar(sm)
EDIT: For matplotlib v1.3 or greater the code becomes:
import matplotlib.pyplot as plt
sm = plt.cm.ScalarMappable(cmap=my_cmap, norm=plt.Normalize(vmin=0, vmax=1))
# fake up the array of the scalar mappable. Urgh...
sm._A = []
plt.colorbar(sm)
EDIT: For matplotlib v3.1 or greater simplifies to:
import matplotlib.pyplot as plt
sm = plt.cm.ScalarMappable(cmap=my_cmap, norm=plt.Normalize(vmin=0, vmax=1))
plt.colorbar(sm)
Here's one way to do it while still using plt.plot(). Basically, you make a throw-away plot and get the colorbar from there.
import matplotlib as mpl
import matplotlib.pyplot as plt
min, max = (-40, 30)
step = 10
# Setting up a colormap that's a simple transtion
mymap = mpl.colors.LinearSegmentedColormap.from_list('mycolors',['blue','red'])
# Using contourf to provide my colorbar info, then clearing the figure
Z = [[0,0],[0,0]]
levels = range(min,max+step,step)
CS3 = plt.contourf(Z, levels, cmap=mymap)
plt.clf()
# Plotting what I actually want
X=[[1,2],[1,2],[1,2],[1,2]]
Y=[[1,2],[1,3],[1,4],[1,5]]
Z=[-40,-20,0,30]
for x,y,z in zip(X,Y,Z):
# setting rgb color based on z normalized to my range
r = (float(z)-min)/(max-min)
g = 0
b = 1-r
plt.plot(x,y,color=(r,g,b))
plt.colorbar(CS3) # using the colorbar info I got from contourf
plt.show()
It's a little wasteful, but convenient. It's also not very wasteful if you make multiple plots as you can call plt.colorbar() without regenerating the info for it.
Here is a slightly simplied example inspired by the top answer given by Boris and Hooked (Thanks for the great idea!):
1. Discrete colorbar
Discrete colorbar is more involved, because colormap generated by mpl.cm.get_cmap() is not a mappable image needed as a colorbar() argument. A dummie mappable needs to generated as shown below:
import numpy as np
import matplotlib.pyplot as plt
import matplotlib as mpl
n_lines = 5
x = np.linspace(0, 10, 100)
y = np.sin(x[:, None] + np.pi * np.linspace(0, 1, n_lines))
c = np.arange(1, n_lines + 1)
cmap = mpl.cm.get_cmap('jet', n_lines)
fig, ax = plt.subplots(dpi=100)
# Make dummie mappable
dummie_cax = ax.scatter(c, c, c=c, cmap=cmap)
# Clear axis
ax.cla()
for i, yi in enumerate(y.T):
ax.plot(x, yi, c=cmap(i))
fig.colorbar(dummie_cax, ticks=c)
plt.show();
This will produce a plot with a discrete colorbar:
2. Continuous colorbar
Continuous colorbar is less involved, as mpl.cm.ScalarMappable() allows us to obtain an "image" for colorbar().
import numpy as np
import matplotlib.pyplot as plt
import matplotlib as mpl
n_lines = 5
x = np.linspace(0, 10, 100)
y = np.sin(x[:, None] + np.pi * np.linspace(0, 1, n_lines))
c = np.arange(1, n_lines + 1)
norm = mpl.colors.Normalize(vmin=c.min(), vmax=c.max())
cmap = mpl.cm.ScalarMappable(norm=norm, cmap=mpl.cm.jet)
cmap.set_array([])
fig, ax = plt.subplots(dpi=100)
for i, yi in enumerate(y.T):
ax.plot(x, yi, c=cmap.to_rgba(i + 1))
fig.colorbar(cmap, ticks=c)
plt.show();
This will produce a plot with a continuous colorbar:
[Side note] In this example, I personally don't know why cmap.set_array([]) is necessary (otherwise we'd get error messages). If someone understand the principles under the hood, please comment :)
As other answers here do try to use dummy plots, which is not really good style, here is a generic code for a
Discrete colorbar
A discrete colorbar is produced in the same way a continuous colorbar is created, just with a different Normalization. In this case a BoundaryNorm should be used.
import numpy as np
import matplotlib.pyplot as plt
import matplotlib.colors
n_lines = 5
x = np.linspace(0, 10, 100)
y = np.sin(x[:, None] + np.pi * np.linspace(0, 1, n_lines))
c = np.arange(1., n_lines + 1)
cmap = plt.get_cmap("jet", len(c))
norm = matplotlib.colors.BoundaryNorm(np.arange(len(c)+1)+0.5,len(c))
sm = plt.cm.ScalarMappable(norm=norm, cmap=cmap)
sm.set_array([]) # this line may be ommitted for matplotlib >= 3.1
fig, ax = plt.subplots(dpi=100)
for i, yi in enumerate(y.T):
ax.plot(x, yi, c=cmap(i))
fig.colorbar(sm, ticks=c)
plt.show()

Python 4D plot using matplotlib- confusion in reading and plotting the array

I have a list like below -
array1 = [[1,2,3,0.56],[12,5,30,0.23],[10,12,17,89.65]]
This represents co-ordinates- [[x1,y1,z1,c1],[x2,y2,z2,c2],[x3,y3,z3,c3]].
I used 4D plot with 4th dimension[c1,c2,c3] being the color. I am stuck at plotting. I would like to have a color for c1 at co-ordinates [x1,y1,z1] and similarly to other co-ordinates.
I used the below methods -
import matplotlib.pyplot as plt
import numpy as np
1) for p in range(len(array1)-1):
x = np.append([array1[p][0]], array1[p+1][0])
y = np.append([array1[p][1]], array1[p+1][1])
z = np.append([array1[p][2]], array1[p+1][2])
c = np.append([array1[p][3]], array1[p+1][3])
fig = plt.figure()
ax = fig.gca(projection='3d')
ax.scatter(x,y,z,c=c,cmap = cmap)
plt.show()
The problem in method 1 is, its not plotting all the elements of the list. I guess there is a mistake in executing append. I am not getting any errors but its just not plotting every data.
2) fig = plt.figure()
ax = fig.gca(projection='3d')
for p in range(len(array1)-1):
ax.scatter(array1[p][0],array1[p][1],array1[p][2],array1[p][3],cmap =
cmap)
plt.show()
So in method 2, I tried to plot iteratively but its giving me 'float object unsubscriptable' error.
So can somebody tell me where I am going wrong. Or is there any other method to do this ?
This is one way of doing it by converting your list to array which allows you to slice all the elements directly as x, y, z and color coordinates.
import matplotlib.cm as cm
import matplotlib.pyplot as plt
import numpy as np
fig = plt.figure()
ax = fig.gca(projection='3d')
new_array = = np.array(array1)
ax.scatter(new_array[:,0],new_array[:,1],new_array[:,2], c=new_array[:,3], cmap=cm.RdBu, s=100)

Matplotlib 2D line plot with color as a function of a third variable, plus colorbar [duplicate]

I have two list as below:
latt=[42.0,41.978567980875397,41.96622693388357,41.963791391892457,...,41.972407378075879]
lont=[-66.706920989908909,-66.703116557977069,-66.707351643324543,...-66.718218142021925]
now I want to plot this as a line, separate each 10 of those 'latt' and 'lont' records as a period and give it a unique color.
what should I do?
There are several different ways to do this. The "best" approach will depend mostly on how many line segments you want to plot.
If you're just going to be plotting a handful (e.g. 10) line segments, then just do something like:
import numpy as np
import matplotlib.pyplot as plt
def uniqueish_color():
"""There're better ways to generate unique colors, but this isn't awful."""
return plt.cm.gist_ncar(np.random.random())
xy = (np.random.random((10, 2)) - 0.5).cumsum(axis=0)
fig, ax = plt.subplots()
for start, stop in zip(xy[:-1], xy[1:]):
x, y = zip(start, stop)
ax.plot(x, y, color=uniqueish_color())
plt.show()
If you're plotting something with a million line segments, though, this will be terribly slow to draw. In that case, use a LineCollection. E.g.
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.collections import LineCollection
xy = (np.random.random((1000, 2)) - 0.5).cumsum(axis=0)
# Reshape things so that we have a sequence of:
# [[(x0,y0),(x1,y1)],[(x0,y0),(x1,y1)],...]
xy = xy.reshape(-1, 1, 2)
segments = np.hstack([xy[:-1], xy[1:]])
fig, ax = plt.subplots()
coll = LineCollection(segments, cmap=plt.cm.gist_ncar)
coll.set_array(np.random.random(xy.shape[0]))
ax.add_collection(coll)
ax.autoscale_view()
plt.show()
For both of these cases, we're just drawing random colors from the "gist_ncar" coloramp. Have a look at the colormaps here (gist_ncar is about 2/3 of the way down): http://matplotlib.org/examples/color/colormaps_reference.html
Copied from this example:
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.collections import LineCollection
from matplotlib.colors import ListedColormap, BoundaryNorm
x = np.linspace(0, 3 * np.pi, 500)
y = np.sin(x)
z = np.cos(0.5 * (x[:-1] + x[1:])) # first derivative
# Create a colormap for red, green and blue and a norm to color
# f' < -0.5 red, f' > 0.5 blue, and the rest green
cmap = ListedColormap(['r', 'g', 'b'])
norm = BoundaryNorm([-1, -0.5, 0.5, 1], cmap.N)
# Create a set of line segments so that we can color them individually
# This creates the points as a N x 1 x 2 array so that we can stack points
# together easily to get the segments. The segments array for line collection
# needs to be numlines x points per line x 2 (x and y)
points = np.array([x, y]).T.reshape(-1, 1, 2)
segments = np.concatenate([points[:-1], points[1:]], axis=1)
# Create the line collection object, setting the colormapping parameters.
# Have to set the actual values used for colormapping separately.
lc = LineCollection(segments, cmap=cmap, norm=norm)
lc.set_array(z)
lc.set_linewidth(3)
fig1 = plt.figure()
plt.gca().add_collection(lc)
plt.xlim(x.min(), x.max())
plt.ylim(-1.1, 1.1)
plt.show()
See the answer here to generate the "periods" and then use the matplotlib scatter function as #tcaswell mentioned. Using the plot.hold function you can plot each period, colors will increment automatically.
Cribbing the color choice off of #JoeKington,
import numpy as np
import matplotlib.pyplot as plt
def uniqueish_color(n):
"""There're better ways to generate unique colors, but this isn't awful."""
return plt.cm.gist_ncar(np.random.random(n))
plt.scatter(latt, lont, c=uniqueish_color(len(latt)))
You can do this with scatter.
I have been searching for a short solution how to use pyplots line plot to show a time series coloured by a label feature without using scatter due to the amount of data points.
I came up with the following workaround:
plt.plot(np.where(df["label"]==1, df["myvalue"], None), color="red", label="1")
plt.plot(np.where(df["label"]==0, df["myvalue"], None), color="blue", label="0")
plt.legend()
The drawback is you are creating two different line plots so the connection between the different classes is not shown. For my purposes it is not a big deal. It may help someone.

Matplotlib - add colorbar to a sequence of line plots

I have a sequence of line plots for two variables (x,y) for a number of different values of a variable z. I would normally add the line plots with legends like this:
import matplotlib.pyplot as plt
fig = plt.figure()
ax = fig.add_subplot(111)
# suppose mydata is a list of tuples containing (xs, ys, z)
# where xs and ys are lists of x's and y's and z is a number.
legns = []
for(xs,ys,z) in mydata:
pl = ax.plot(xs,ys,color = (z,0,0))
legns.append("z = %f"%(z))
ax.legends(legns)
plt.show()
But I have too many graphs and the legends will cover the graph. I'd rather have a colorbar indicating the value of z corresponding to the color. I can't find anything like that in the galery and all my attempts do deal with the colorbar failed. Apparently I must create a collection of plots before trying to add a colorbar.
Is there an easy way to do this? Thanks.
EDIT (clarification):
I wanted to do something like this:
import matplotlib.pyplot as plt
import matplotlib.cm as cm
fig = plt.figure()
ax = fig.add_subplot(111)
mycmap = cm.hot
# suppose mydata is a list of tuples containing (xs, ys, z)
# where xs and ys are lists of x's and y's and z is a number between 0 and 1
plots = []
for(xs,ys,z) in mydata:
pl = ax.plot(xs,ys,color = mycmap(z))
plots.append(pl)
fig.colorbar(plots)
plt.show()
But this won't work according to the Matplotlib reference because a list of plots is not a "mappable", whatever this means.
I've created an alternative plot function using LineCollection:
def myplot(ax,xs,ys,zs, cmap):
plot = lc([zip(x,y) for (x,y) in zip(xs,ys)], cmap = cmap)
plot.set_array(array(zs))
x0,x1 = amin(xs),amax(xs)
y0,y1 = amin(ys),amax(ys)
ax.add_collection(plot)
ax.set_xlim(x0,x1)
ax.set_ylim(y0,y1)
return plot
xs and ys are lists of lists of x and y coordinates and zs is a list of the different conditions to colorize each line. It feels a bit like a cludge though... I thought that there would be a more neat way to do this. I like the flexibility of the plt.plot() function.
(I know this is an old question but...) Colorbars require a matplotlib.cm.ScalarMappable, plt.plot produces lines which are not scalar mappable, therefore, in order to make a colorbar, we are going to need to make a scalar mappable.
Ok. So the constructor of a ScalarMappable takes a cmap and a norm instance. (norms scale data to the range 0-1, cmaps you have already worked with and take a number between 0-1 and returns a color). So in your case:
import matplotlib.pyplot as plt
sm = plt.cm.ScalarMappable(cmap=my_cmap, norm=plt.normalize(min=0, max=1))
plt.colorbar(sm)
Because your data is in the range 0-1 already, you can simplify the sm creation to:
sm = plt.cm.ScalarMappable(cmap=my_cmap)
EDIT: For matplotlib v1.2 or greater the code becomes:
import matplotlib.pyplot as plt
sm = plt.cm.ScalarMappable(cmap=my_cmap, norm=plt.normalize(vmin=0, vmax=1))
# fake up the array of the scalar mappable. Urgh...
sm._A = []
plt.colorbar(sm)
EDIT: For matplotlib v1.3 or greater the code becomes:
import matplotlib.pyplot as plt
sm = plt.cm.ScalarMappable(cmap=my_cmap, norm=plt.Normalize(vmin=0, vmax=1))
# fake up the array of the scalar mappable. Urgh...
sm._A = []
plt.colorbar(sm)
EDIT: For matplotlib v3.1 or greater simplifies to:
import matplotlib.pyplot as plt
sm = plt.cm.ScalarMappable(cmap=my_cmap, norm=plt.Normalize(vmin=0, vmax=1))
plt.colorbar(sm)
Here's one way to do it while still using plt.plot(). Basically, you make a throw-away plot and get the colorbar from there.
import matplotlib as mpl
import matplotlib.pyplot as plt
min, max = (-40, 30)
step = 10
# Setting up a colormap that's a simple transtion
mymap = mpl.colors.LinearSegmentedColormap.from_list('mycolors',['blue','red'])
# Using contourf to provide my colorbar info, then clearing the figure
Z = [[0,0],[0,0]]
levels = range(min,max+step,step)
CS3 = plt.contourf(Z, levels, cmap=mymap)
plt.clf()
# Plotting what I actually want
X=[[1,2],[1,2],[1,2],[1,2]]
Y=[[1,2],[1,3],[1,4],[1,5]]
Z=[-40,-20,0,30]
for x,y,z in zip(X,Y,Z):
# setting rgb color based on z normalized to my range
r = (float(z)-min)/(max-min)
g = 0
b = 1-r
plt.plot(x,y,color=(r,g,b))
plt.colorbar(CS3) # using the colorbar info I got from contourf
plt.show()
It's a little wasteful, but convenient. It's also not very wasteful if you make multiple plots as you can call plt.colorbar() without regenerating the info for it.
Here is a slightly simplied example inspired by the top answer given by Boris and Hooked (Thanks for the great idea!):
1. Discrete colorbar
Discrete colorbar is more involved, because colormap generated by mpl.cm.get_cmap() is not a mappable image needed as a colorbar() argument. A dummie mappable needs to generated as shown below:
import numpy as np
import matplotlib.pyplot as plt
import matplotlib as mpl
n_lines = 5
x = np.linspace(0, 10, 100)
y = np.sin(x[:, None] + np.pi * np.linspace(0, 1, n_lines))
c = np.arange(1, n_lines + 1)
cmap = mpl.cm.get_cmap('jet', n_lines)
fig, ax = plt.subplots(dpi=100)
# Make dummie mappable
dummie_cax = ax.scatter(c, c, c=c, cmap=cmap)
# Clear axis
ax.cla()
for i, yi in enumerate(y.T):
ax.plot(x, yi, c=cmap(i))
fig.colorbar(dummie_cax, ticks=c)
plt.show();
This will produce a plot with a discrete colorbar:
2. Continuous colorbar
Continuous colorbar is less involved, as mpl.cm.ScalarMappable() allows us to obtain an "image" for colorbar().
import numpy as np
import matplotlib.pyplot as plt
import matplotlib as mpl
n_lines = 5
x = np.linspace(0, 10, 100)
y = np.sin(x[:, None] + np.pi * np.linspace(0, 1, n_lines))
c = np.arange(1, n_lines + 1)
norm = mpl.colors.Normalize(vmin=c.min(), vmax=c.max())
cmap = mpl.cm.ScalarMappable(norm=norm, cmap=mpl.cm.jet)
cmap.set_array([])
fig, ax = plt.subplots(dpi=100)
for i, yi in enumerate(y.T):
ax.plot(x, yi, c=cmap.to_rgba(i + 1))
fig.colorbar(cmap, ticks=c)
plt.show();
This will produce a plot with a continuous colorbar:
[Side note] In this example, I personally don't know why cmap.set_array([]) is necessary (otherwise we'd get error messages). If someone understand the principles under the hood, please comment :)
As other answers here do try to use dummy plots, which is not really good style, here is a generic code for a
Discrete colorbar
A discrete colorbar is produced in the same way a continuous colorbar is created, just with a different Normalization. In this case a BoundaryNorm should be used.
import numpy as np
import matplotlib.pyplot as plt
import matplotlib.colors
n_lines = 5
x = np.linspace(0, 10, 100)
y = np.sin(x[:, None] + np.pi * np.linspace(0, 1, n_lines))
c = np.arange(1., n_lines + 1)
cmap = plt.get_cmap("jet", len(c))
norm = matplotlib.colors.BoundaryNorm(np.arange(len(c)+1)+0.5,len(c))
sm = plt.cm.ScalarMappable(norm=norm, cmap=cmap)
sm.set_array([]) # this line may be ommitted for matplotlib >= 3.1
fig, ax = plt.subplots(dpi=100)
for i, yi in enumerate(y.T):
ax.plot(x, yi, c=cmap(i))
fig.colorbar(sm, ticks=c)
plt.show()

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