Stop a background process in flask without creating zombie processes - python

I need to start a long-running background process with subprocess when someone visits a particular view.
My code:
from flask import Flask
import subprocess
app = Flask(__name__)
#app.route("/")
def index():
subprocess.Popen(["sleep", "10"])
return "hi\n"
if __name__ == "__main__":
app.run(debug=True)
This works great, for the most part.
The problem is that when the process (sleep) ends, ps -Af | grep sleep shows it as [sleep] <defunct>.
From what I've read, this is because I still have a reference to the process in flask.
Is there a way to drop this reference after the process exits?
I tried doing g.subprocess = subprocess.Popen(["sleep", "10"]), and waiting for the process to end in #app.after_request(response) so I can use del on it, but this prevents flask from returning the response until the subprocess exits - I need it to return the response before the subprocess exits.
Note:
I need the subprocess.Popen operation to be non-blocking - this is important.

As I've suggested in the comments, one of the cleanest and most robust way of achieving this kind of thing in Python is by using celery.
Celery requires a broker transport for messaging, for which rabbitmq is the default, and at least a process with workers running. However, the thing that increases readbility an dmaintanability is that the worker code can co-exist in the same file or files than your server app. You invoke the remote procedures as though it where a simple function call.
Celery can handle retries, post-task events, and lots of other things for free, everything with mature code hardened by years of use in production.
This is your example after re-writting it for use with Celery:
from flask import Flask
from celery import Celery
import subprocess
app = Flask(__name__)
celery_app = Celery("test")
#celery_app.task
def run_process():
subprocess.Popen(["sleep", "5"])
#app.route("/")
def index():
run_process.delay()
return "hi\n"
if __name__ == "__main__":
app.run(debug=True, port=8080)
With this code, in a system with the rabbitmq server running with default options (I installed the package, and started the service - no configurations whatsoever. Of course on production you would have to tune that - but if everything is to be on the same server, it may not even be needed.)
With rabbitmq in place, one starts the worker process with a command line like: celery worker -A bla1.celery_app -D (pip install celery on the same virtualenv you have your Flask). Then just launch the flask server and see it working.
Of course this has even more advantages if you are doing more work in Python itself than just calling an external process. It can have access to your database models, and you can perform assynchronous actions that modify objects in there (and eventually trigger responses for the user, as "flash" messages on the user session, or e-mails)

I've seen a lot of "poor man's parallel processing" using subprocess.Popen and letting it run freely, but that's often leading to zombie problems as you noted.
You could run your process in a thread (in that case, no need for Popen, just use call or check_call if you want to raise an exception if process failed). call or check_call (or run since Python 3.5) waits for the process to complete so no zombies, and since you're running it in a thread you're not blocked.
import threading
def in_background():
subprocess.call(["sleep", "10"])
#app.route("/")
def index():
t = threading.Thread(target=in_background)
t.start()
return "hi\n"
Note: To wait for thread completion you'd have to use t.join() and for that you'd have to keep a reference on the t thread object.
BTW, I suppose that your real process isn't sleep, or it's not very useful and time.sleep(10) does the same (always in a thread of course!)

Related

how to design a fastapi app with independent background computation?

I've created a python main application main.py, which I invoke with uvicorn main.main --reload. Which of course runs the following code...
if __name__ == '__main__':
main()
That part of the application runs constantly, reads data an processes it until the application is aborted manually. I use asyncio to run coroutines.
Task
I would like to build a small html dashboard on it, which can display the data that is constantly computed.
Question
How can I run these background calculations of main.py and still implement a dashboard/website with fastapi and jinja2?
What is the best practice/architecture to structure the files: the background and fastapi app code? e.g. Is there a initial startup function in fastapi where I could invoke the background computation in a coroutine or the other way around?
How would you invoke the application according to your recommendation?
What I have achieved so far
I can run the main application without any fastapi code. And I can run the dashboard without the background tasks. Both work fine independently. But fastapi does not run, when I add its code to the main application with the background computation. (How could it?!? I can only invoke either the main application or the fastapi app.)
Any architectural concepts are appreciated.
Thank you.
Fastapi doesn't run because it cant be reached by python interpreter untill it complete your computations. You should start your web app independently of the main process, I strongly recommend you to use docker-compose.
As fastapi recommends you, you should use Dramatiq or Celery for huge background tasks, or you can just run separate service in compose services, for example:
# background.py
if __name__ == '__main__':
main()
# main.py
app = FastAPI()
docker-compose.yml:
services:
web-app-interface:
command: uvicorn main.main ...
my-daemon:
command: python background.py
You can make them communicate with a message broker, such as RabbitMQ etc.
And never use multiprocessing with uvicorn, it can cause process leak, bcz uvicorn rules it's own workers.
A good approch is to use the on_event decorator with startup. The only thing to remain is to use asyncio.create_task to invoke the background task. As long as you don't await it, it will not block and thus fastapi/uvicorn can continue to serve any http request.
my_service = MyService()
#app.on_event('startup')
async def service_tasks_startup():
"""Start all the non-blocking service tasks, which run in the background."""
asyncio.create_task(my_service.start_processing_data())
Also, with this said, any request can consume the data of this background service.
#app.get("/")
def root():
return my_service.value
Think of MyService as any class of your liking. Kafka consumption, computations, etc. Of course, the value is just an example attribute of the Class MyService.

Returning a status code early for a time consuming function in Flask

I have an API route that calls a function (ie: doSomethingForALongTime) that takes some time to finish. If we assume that the function doesn't return anything to the client, is there a work around to just call the function and send the status code 200 while the function is doing it's job?
#application.route('/api', methods=['GET'])
def api_route():
doSomethingForALongTime()
return 200
Yes, with some caveats. The usual way to handle this is to use a 'task queue', such as
celery or
rq
(there's a walk-through of how to use rq in chapter 22 of the
flask mega tutorial). The approaches require that, at least, you have redis running, and are running separate worker processes.
The idea is hand a task off to the task queue in your handler (route), then return a response to the browser while a worker in a separate process picks the task up from the queue and runs it.
It's also possible to run a 'worker thread' in your app, and have the handler queue up work for it. I have a proof-of-concept for that here, with the caveat that I've only used it for personal apps. The caveat is that this is only really suitable for a personal webapp.

Tornado server caused Django unable to handle concurrent requests

I wrote a Django website that handles concurrent database requests and subprocess calls perfectly fine, if I just run "python manage.py runserver"
This is my model
class MyModel:
...
def foo(self):
args = [......]
pipe = subprocess.Popen(args, stdout=subproccess.PIPE, stderr=subprocess.PIPE)
In my view:
def call_foo(request):
my_model = MyModel()
my_model.foo()
However, after I wrap it using Tornado server, it's no longer able to handle concurrent request. When I click my website where it sends async get request to this call_foo() function, it seems like my app is not able to handle other requests. For example, if I open the home page url, it keeps waiting and won't display until the above subprocess call in foo() has finished.
If I do not use Tornado, everything works fine.
Below is my code to start the tornado server. Is there anything that I did wrong?
MAX_WAIT_SECONDS_BEFORE_SHUTDOWN = 5
def sig_handler(sig, frame):
logging.warning('Caught signal: %s', sig)
tornado.ioloop.IOLoop.instance().add_callback(force_shutdown)
def force_shutdown():
logging.info("Stopping tornado server")
server.stop()
logging.info('Will shutdown in %s seconds ...', MAX_WAIT_SECONDS_BEFORE_SHUTDOWN)
io_loop = tornado.ioloop.IOLoop.instance()
deadline = time.time() + MAX_WAIT_SECONDS_BEFORE_SHUTDOWN
def stop_loop():
now = time.time()
if now < deadline and (io_loop._callbacks or io_loop._timeouts):
io_loop.add_timeout(now + 1, stop_loop)
else:
io_loop.stop()
logging.info('Force Shutdown')
stop_loop()
def main():
parse_command_line()
logging.info("starting tornado web server")
os.environ['DJANGO_SETTINGS_MODULE'] = 'mydjango.settings'
django.setup()
wsgi_app = tornado.wsgi.WSGIContainer(django.core.handlers.wsgi.WSGIHandler())
tornado_app = tornado.web.Application([
(r'/(favicon\.ico)', tornado.web.StaticFileHandler, {'path': "static"}),
(r'/static/(.*)', tornado.web.StaticFileHandler, {'path': "static"}),
('.*', tornado.web.FallbackHandler, dict(fallback=wsgi_app)),
])
global server
server = tornado.httpserver.HTTPServer(tornado_app)
server.listen(options.port)
signal.signal(signal.SIGTERM, sig_handler)
signal.signal(signal.SIGINT, sig_handler)
tornado.ioloop.IOLoop.instance().start()
logging.info("Exit...")
if __name__ == '__main__':
main()
There is nothing wrong with your set-up. This is by design.
So, WSGI protocol (and so Django) uses syncronous model. It means that when your app starts processing a request it takes control and gives it back only when request is finished. That's why it can process single request at once. To allow simultaneous requests one usually launches wsgi application in multithreaded or multiprocessed mode.
The Tornado server on other side uses asynchronous model. The idea here is to have own scheduler instead of OS scheduler that works with threads and processes. So your code runs some logic, then launches some long task (DB call, URL fetch), sets up what to run when task finishes and gives control back to scheduler.
Giving controll back to scheduler is crucial part, it allows async server to work fast because it can start processing new request while previous is waiting for data.
This answer explains sync/async detailed. It focuses on client, but I think you can see the idea.
So whats wrong with your code: Popen does not give control to IOLoop. Python does nothing until your subprocess is finished, and so can not process other requests, even not Django's requests. runserver "works" here because it's multithreaded. So while locking entirely the thread, other threads can still process requests.
For this reason it's usually not recommended to run WSGI apps under async server like tornado. The doc claims it will be less scalable, but you can see the problem on your own code. So if you need both servers (e.g. Tornado for sockets and Django for main site), I'd suggest to run both behind nginx, and use uwsgi or gunicorn to run Django. Or take a look at django-channels app instead of tornado.
Besides, while it works on test environment, I guess it's not a recomended way to do what you try to achieve. It's hard to suggest the solution, as I don't know what do you call with Popen, but it seams to be something long running. Maybe you should take a look at Celery project. It's a package for running long-term background job.
However, back to running sub-processes. In Tornado you can use tornado.process.Subprocess. It's a wrapper over Popen to allow it to work with IOLoop. Unfortunately I don't know if you can use it in wsgi part under tornado. There are some projects I remember, like django futures but it seems to be abandoned.
As another quick and dirty fix - you can run Tornado with several processes. Check this example on how to fork server. But I will not recoment using this in production anyway (fork is OK, running wsgi fallback is not).
So to summarize, I would rewrite your code to do one of the following:
Run the Popen call in some background queue, like Celery
Process such views with Tornado and use tornado.processes module to run subprocess.
And overall, I'd seek for another deployment infrastructure, and would not run Durango under tornado.

Starting Background Daemon in Flask App

So I'm building a longrunning query web app for internal use.
My goal is to have a flask app with a daemon process that starts when the server starts, that will update a global dictionary object.
I don't necessarily have any sample code to post, as I've tried to accomplish this many ways and none have been successful.
The daemon will be creating a thread pool (multiprocessing.Pool) to loop through all database instances and running a couple queries on them.
It seems that no matter how I try and implement this (right now, using the flask development server) it locks up the app and nothing else can be done while it's running. I have tried reading through a bunch of documentation, but as per usual a lot of other knowledge is assumed and I end up overwhelmed.
I'm wondering if anyone can offer some guidance, even if it's places I can look for this, because I have searched all over for 'flask startup routine' and similar, but have found nothing of use. It seems that when I deploy this to our server, I may be able to define some startup daemons in my .wsgi file, but until then is there any way to do this locally? Is that even the right approach when I do push it out for General use?
Otherwise, I was just thinking of setting up a cron job that continuously runs a python script that does the queries I need, and dumps to a MongoDB instance or something, so that the clients can simply pull from that (as doing all of the queries on the server side of the Flask app just locks up the server, so nothing else can be done with it -- aka: can't take action on info, kill spids etc)
Any help with this would help majorly, my brain has been spinning for days.
from flask import Flask
from celery import Celery
app = Flask(__name__)
app.config['CELERY_BROKER_URL'] = 'amqp://guest#localhost//'
app.config['CELERY_RESULT_BACKEND'] = 'amqp://guest#localhost//'
celery = Celery(app.name, broker=app.config['CELERY_BROKER_URL'])
celery.conf.update(app.config)
output = 0
#app.before_first_request
def init():
task = my_task.apply_async()
#app.route('/')
def hello_world():
global output
return 'Hello World! - ' + str(output)
#celery.task
def my_task():
global output
result = 0
for i in range(100):
result += i
output = result
if __name__ == '__main__':
app.run()
Depending how complex your query is, you could consider running your query via a second thread. Because of the GIL you don't need to worry about common data structure objects (such as the dictionary) being thread safe. A nice thing about threads is even though there's a GIL they're generally good about not blocking other threads executing during intense I/O (such as a thread for queries). See 2. Trivial example:
import threading
import time
import random
from flask import Flask
app = Flask(__name__)
data_store = {'a': 1}
def interval_query():
while True:
time.sleep(1)
vals = {'a': random.randint(0,100)}
data_store.update(vals)
thread = threading.Thread(name='interval_query', target=interval_query)
thread.setDaemon(True)
thread.start()
#app.route('/')
def hello_world():
return str(data_store['a'])
if __name__ == "__main__":
app.run()
Well, first of all: don't try to solve this problem by yourself: don't use threads or any kind of multiprocessing. Why? Because later on you want to scale up and the best way is to leave this up to the server - gunicorn, uwsgi. If you would try to handle this by yourself it would very likely collide with how these servers works.
Instead what you should do is to use one service for processing the request and message queue with a worker process that handles asynchronous tasks. This approach is more better at scaling.
From your question it seems that your are not looking for an answer but rather for guidance, have a look here: http://flask.pocoo.org/docs/0.10/patterns/celery/ and this https://www.quora.com/Celery-distributed-task-queue-What-is-the-difference-between-workers-and-processes
The advantage here is that the web worker / task worker / celery solution scales much better than the alternatives as the only bottleneck is the database.

Asynchronous Flask functions

I have an app in flask that I need to perform some asynchronous action on. I've read about celery, but not sure if it's correct.
Basically I have a button that takes input and runs a query to return back to the template, and this is quick, but I want it to also run another task (passing a SOAP envelope against a web service), and this is slow. I don't want the user to have to wait for the web-service call to finish. I'd like for the query running the return back to the template with new data to happen as quickly as possible and the web-service call to happen in the background.
Is this doable?
I know there are lots of Celery related threads here, but this might provide some service.
Using Celery for asynchronous activity requires more than just installing and importing the lib.
Requirements:
Celery lib
Queue broker, like Redis (in memory db), installed
Separate file that creates celery object
I found the Flask documentation on Celery with flask lacking. My preferred method was to create a tasks.py file and put in
from celery import Celery
# Other imports for functionality here
app = Celery('tasks', broker='redis://localhost:6379')
#app.tasks
def your_function(args):
do something with args
return something
Then in the application file make sure this is imported:
from tasks import your_function
And then use it where you need to in the app
your_function(args)
Then you must make sure that a celery daemon/worker is running. This can be done by init, by systemd, by launchctl or manually at the CLI (not ideal). Redis must also be running and listening on the url you give it.
I hope this helps someone else.
sounds like you need tornado! Asynchronous web server gateway compatible with flask
from tornado.wsgi import WSGIContainer
from tornado.httpserver import HTTPServer
from tornado.ioloop import IOLoop
from YourModule import app
http_server = HTTPServer(WSGIContainer(app))
http_server.listen(8080)
IOLoop.instance().start()
I prefer tornado for its speed, reliability, and simplicity with Flask, which I love for its beauty

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