I am trying to install pygraphviz in OS X 10.9.5. I am using Python 2.7.12 with Anaconda 2.1.0. I already have graphviz installed.
Here is the error I get when running pip install pygraphviz
#include "graphviz/cgraph.h"
^
compilation terminated.
error: command 'gcc' failed with exit status 1
----------------------------------------
Failed building wheel for pygraphviz
Running setup.py clean for pygraphviz
Failed to build pygraphviz
Installing collected packages: pygraphviz
Running setup.py install for pygraphviz ... error
Complete output from command /Users/safsafi/anaconda/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/vv/w5df7gw55bz_8bry85xf18rh0000gn/T/pip-build-QsLsqM/pygraphviz/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/vv/w5df7gw55bz_8bry85xf18rh0000gn/T/pip-_MkJKV-record/install-record.txt --single-version-externally-managed --compile:
running install
Trying pkg-config
Package libcgraph was not found in the pkg-config search path.
Perhaps you should add the directory containing `libcgraph.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libcgraph' found
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/private/var/folders/vv/w5df7gw55bz_8bry85xf18rh0000gn/T/pip-build-QsLsqM/pygraphviz/setup.py", line 87, in <module>
tests_require=['nose>=0.10.1', 'doctest-ignore-unicode>=0.1.0',],
File "/Users/safsafi/anaconda/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/Users/safsafi/anaconda/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/Users/safsafi/anaconda/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "setup_commands.py", line 44, in modified_run
self.include_path, self.library_path = get_graphviz_dirs()
File "setup_extra.py", line 121, in get_graphviz_dirs
include_dirs, library_dirs = _pkg_config()
File "setup_extra.py", line 44, in _pkg_config
output = S.check_output(['pkg-config', '--libs-only-L', 'libcgraph'])
File "/Users/safsafi/anaconda/lib/python2.7/subprocess.py", line 574, in check_output
raise CalledProcessError(retcode, cmd, output=output)
subprocess.CalledProcessError: Command '['pkg-config', '--libs-only-L', 'libcgraph']' returned non-zero exit status 1
----------------------------------------
Command "/Users/safsafi/anaconda/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/vv/w5df7gw55bz_8bry85xf18rh0000gn/T/pip-build-QsLsqM/pygraphviz/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/vv/w5df7gw55bz_8bry85xf18rh0000gn/T/pip-_MkJKV-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/vv/w5df7gw55bz_8bry85xf18rh0000gn/T/pip-build-QsLsqM/pygraphviz/
I have also tried running :
conda install --channel https://conda.anaconda.org/garylschultz pygraphviz
Which does not give any error but import pygraphviz still don't work in python.
When I try import pygraphviz in python I get the following error:
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/Users/safsafi/anaconda/lib/python2.7/site-packages/pygraphviz/__init__.py", line 54, in <module>
from agraph import AGraph, Node, Edge, Attribute, ItemAttribute
File "/Users/safsafi/anaconda/lib/python2.7/site-packages/pygraphviz/agraph.py", line 20, in <module>
import graphviz as gv
File "/Users/safsafi/anaconda/lib/python2.7/site-packages/pygraphviz/graphviz.py", line 7, in <module>
import _graphviz
ImportError: dlopen(/Users/safsafi/anaconda/lib/python2.7/site-packages/pygraphviz/_graphviz.so, 2): Library not loaded: /opt/local/lib/libcgraph.6.dylib
Referenced from: /Users/safsafi/anaconda/lib/python2.7/site-packages/pygraphviz/_graphviz.so
Reason: image not found
Thanks in advance.
On Mac OSX, I solve it with:
pip install graphviz
pip install --install-option="--include-path=/opt/local/include" --install-option="--library-path=/opt/local/lib" pygraphviz
GitHub related issue
Related
I need to use cugraph in kaggle forthat i install rapids with this code:
import sys
!cp ../input/rapids/rapids.21.06 /opt/conda/envs/rapids.tar.gz
!cd /opt/conda/envs/ && tar -xzvf rapids.tar.gz > /dev/null
sys.path = ["/opt/conda/envs/rapids/lib/python3.7/site-packages"] + sys.path
sys.path = ["/opt/conda/envs/rapids/lib/python3.7"] + sys.path
sys.path = ["/opt/conda/envs/rapids/lib"] + sys.path
!cp /opt/conda/envs/rapids/lib/libxgboost.so /opt/conda/lib/
then,
conda install -c nvidia -c rapidsai -c numba -c conda-forge -c defaults cugraph cudatoolkit=10.2
but cugraph not installed, usually i have this error:
ModuleNotFoundError Traceback (most recent call last) /tmp/ipykernel_241/370751810.py in <module>
----> 1 import cugraph
ModuleNotFoundError: No module named 'cugraph'
When i try to use !pip in the installation, i get this error:
Collecting cugraph
Using cached cugraph-0.6.1.post1.tar.gz (1.1 kB)
Building wheels for collected packages: cugraph
Building wheel for cugraph (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /opt/conda/bin/python3.7 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-vayp36a0/cugraph_6683f309da3e4f3da55486b6a34ad47d/setup.py'"'"'; __file__='"'"'/tmp/pip-install-vayp36a0/cugraph_6683f309da3e4f3da55486b6a34ad47d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-nar691rc
cwd: /tmp/pip-install-vayp36a0/cugraph_6683f309da3e4f3da55486b6a34ad47d/
Complete output (25 lines):
running bdist_wheel
running build
installing to build/bdist.linux-x86_64/wheel
running install
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-vayp36a0/cugraph_6683f309da3e4f3da55486b6a34ad47d/setup.py", line 35, in <module>
cmdclass={'install': InstallWrapper},
File "/opt/conda/lib/python3.7/site-packages/setuptools/__init__.py", line 153, in setup
return distutils.core.setup(**attrs)
File "/opt/conda/lib/python3.7/distutils/core.py", line 148, in setup
dist.run_commands()
File "/opt/conda/lib/python3.7/distutils/dist.py", line 966, in run_commands
self.run_command(cmd)
File "/opt/conda/lib/python3.7/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/opt/conda/lib/python3.7/site-packages/wheel/bdist_wheel.py", line 335, in run
self.run_command('install')
File "/opt/conda/lib/python3.7/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/opt/conda/lib/python3.7/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/tmp/pip-install-vayp36a0/cugraph_6683f309da3e4f3da55486b6a34ad47d/setup.py", line 15, in run
raise Exception(long_description)
Exception: Please install cugraph via the rapidsai conda channel. See https://rapids.ai/start.html for instructions.
----------------------------------------
ERROR: Failed building wheel for cugraph
For future reader's reference, the full answer is detailed here:
https://github.com/rapidsai/cugraph/issues/1972#issuecomment-982925312
User needs to specify RPAIDS version, python version and CUDA toolkit Version. The working conda install command for Kaggle, as of writing, is:
!conda install -y -c rapidsai -c nvidia -c conda-forge cugraph=21.08 python=3.7 cudatoolkit=11.0
Facing the following error while installing dlib for the OpenCV project. It shows that
CMake must be installed to build the following extensions: dlib.
Command Output:
Collecting dlib==19.18.0
Using cached dlib-19.18.0.tar.gz (3.1 MB)
Using legacy 'setup.py install' for dlib, since package 'wheel' is not installed.
Installing collected packages: dlib
Running setup.py install for dlib: started
Running setup.py install for dlib: finished with status 'error'
ERROR: Command errored out with exit status 1:
command: 'D:\Install Drive\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\mahmu\\AppData\\Local\\Temp\\pip-install-a4s1a_zh\\dlib\\setup.py'"'"'; __file__='"'"'C:\\Users\\mahmu\\AppData\\Local\\Temp\\pip-install-a4s1a_zh\\dlib\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record 'C:\Users\mahmu\AppData\Local\Temp\pip-record-mjm6k3c3\install-record.txt' --single-version-externally-managed --compile --install-headers 'D:\Install Drive\Include\dlib'
cwd: C:\Users\mahmu\AppData\Local\Temp\pip-install-a4s1a_zh\dlib\
Complete output (57 lines):
running install
running build
running build_py
package init file 'dlib\__init__.py' not found (or not a regular file)
warning: build_py: byte-compiling is disabled, skipping.
running build_ext
Traceback (most recent call last):
File "C:\Users\mahmu\AppData\Local\Temp\pip-install-a4s1a_zh\dlib\setup.py", line 120, in get_cmake_version
out = subprocess.check_output(['cmake', '--version'])
File "D:\Install Drive\lib\subprocess.py", line 424, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "D:\Install Drive\lib\subprocess.py", line 505, in run
with Popen(*popenargs, **kwargs) as process:
File "D:\Install Drive\lib\subprocess.py", line 951, in __init__
self._execute_child(args, executable, preexec_fn, close_fds,
File "D:\Install Drive\lib\subprocess.py", line 1420, in _execute_child
hp, ht, pid, tid = _winapi.CreateProcess(executable, args,
FileNotFoundError: [WinError 2] The system cannot find the file specified
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\mahmu\AppData\Local\Temp\pip-install-a4s1a_zh\dlib\setup.py", line 223, in <module>
setup(
File "D:\Install Drive\lib\site-packages\setuptools\__init__.py", line 165, in setup
return distutils.core.setup(**attrs)
File "D:\Install Drive\lib\distutils\core.py", line 148, in setup
dist.run_commands()
File "D:\Install Drive\lib\distutils\dist.py", line 966, in run_commands
self.run_command(cmd)
File "D:\Install Drive\lib\distutils\dist.py", line 985, in run_command
cmd_obj.run()
File "D:\Install Drive\lib\site-packages\setuptools\command\install.py", line 61, in run
return orig.install.run(self)
File "D:\Install Drive\lib\distutils\command\install.py", line 546, in run
self.run_command('build')
File "D:\Install Drive\lib\distutils\cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "D:\Install Drive\lib\distutils\dist.py", line 985, in run_command
cmd_obj.run()
File "D:\Install Drive\lib\distutils\command\build.py", line 135, in run
self.run_command(cmd_name)
File "D:\Install Drive\lib\distutils\cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "D:\Install Drive\lib\distutils\dist.py", line 985, in run_command
cmd_obj.run()
File "C:\Users\mahmu\AppData\Local\Temp\pip-install-a4s1a_zh\dlib\setup.py", line 129, in run
cmake_version = self.get_cmake_version()
File "C:\Users\mahmu\AppData\Local\Temp\pip-install-a4s1a_zh\dlib\setup.py", line 122, in get_cmake_version
raise RuntimeError("\n*******************************************************************\n" +
RuntimeError:
*******************************************************************
CMake must be installed to build the following extensions: dlib
*******************************************************************
----------------------------------------
ERROR: Command errored out with exit status 1: 'D:\Install Drive\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\mahmu\\AppData\\Local\\Temp\\pip-install-a4s1a_zh\\dlib\\setup.py'"'"'; __file__='"'"'C:\\Users\\mahmu\\AppData\\Local\\Temp\\pip-install-a4s1a_zh\\dlib\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record 'C:\Users\mahmu\AppData\Local\Temp\pip-record-mjm6k3c3\install-record.txt' --single-version-externally-managed --compile --install-headers 'D:\Install Drive\Include\dlib' Check the logs for full command output.
WARNING: You are using pip version 20.2.3; however, version 21.1.2 is available.
You should consider upgrading via the 'D:\Install Drive\python.exe -m pip install --upgrade pip' command.
Notice that in the output that "CMake must be installed to build the following extensions: dlib". So install CMake first and only then try to install dlib. If CMake is installed, try updating your pip version to 21.1.2 via "D:\Install Drive\python.exe -m pip install --upgrade pip".
It requires cmake must be installed before installing dlib. Do execute in the following order.
pip install cmake
pip install dlib
This will fix the issue.
SO I need to use this python library explained here:
https://medium.com/analytics-vidhya/recognizing-over-50-candlestick-patterns-with-python-4f02a1822cb5
However when I try to execute:
!pip install talib
import talib
I get lots of errors:
Collecting talib
Using cached talib-0.1.1.tar.gz (1.3 kB)
Building wheels for collected packages: talib
Building wheel for talib (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /anaconda/envs/azureml_py36/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-lof3_wuc/talib/setup.py'"'"'; __file__='"'"'/tmp/pip-install-lof3_wuc/talib/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-1dvr6fd9
cwd: /tmp/pip-install-lof3_wuc/talib/
Complete output (29 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib
creating build/lib/talib
copying talib/__init__.py -> build/lib/talib
copying talib/cli.py -> build/lib/talib
installing to build/bdist.linux-x86_64/wheel
running install
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-lof3_wuc/talib/setup.py", line 47, in <module>
'talib = talib.cli:cli',
File "/anaconda/envs/azureml_py36/lib/python3.6/distutils/core.py", line 148, in setup
dist.run_commands()
File "/anaconda/envs/azureml_py36/lib/python3.6/distutils/dist.py", line 955, in run_commands
self.run_command(cmd)
File "/anaconda/envs/azureml_py36/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/anaconda/envs/azureml_py36/lib/python3.6/site-packages/wheel/bdist_wheel.py", line 326, in run
self.run_command('install')
File "/anaconda/envs/azureml_py36/lib/python3.6/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/anaconda/envs/azureml_py36/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-lof3_wuc/talib/setup.py", line 20, in run
raise Exception("You probably meant to install and run ta-lib")
Exception: You probably meant to install and run ta-lib
----------------------------------------
ERROR: Failed building wheel for talib
Running setup.py clean for talib
Failed to build talib
Installing collected packages: talib
Running setup.py install for talib ... error
ERROR: Command errored out with exit status 1:
command: /anaconda/envs/azureml_py36/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-lof3_wuc/talib/setup.py'"'"'; __file__='"'"'/tmp/pip-install-lof3_wuc/talib/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-7fqjayvz/install-record.txt --single-version-externally-managed --compile --install-headers /anaconda/envs/azureml_py36/include/python3.6m/talib
cwd: /tmp/pip-install-lof3_wuc/talib/
Complete output (14 lines):
running install
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-lof3_wuc/talib/setup.py", line 47, in <module>
'talib = talib.cli:cli',
File "/anaconda/envs/azureml_py36/lib/python3.6/distutils/core.py", line 148, in setup
dist.run_commands()
File "/anaconda/envs/azureml_py36/lib/python3.6/distutils/dist.py", line 955, in run_commands
self.run_command(cmd)
File "/anaconda/envs/azureml_py36/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-lof3_wuc/talib/setup.py", line 20, in run
raise Exception("You probably meant to install and run ta-lib")
Exception: You probably meant to install and run ta-lib
----------------------------------------
ERROR: Command errored out with exit status 1: /anaconda/envs/azureml_py36/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-lof3_wuc/talib/setup.py'"'"'; __file__='"'"'/tmp/pip-install-lof3_wuc/talib/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-7fqjayvz/install-record.txt --single-version-externally-managed --compile --install-headers /anaconda/envs/azureml_py36/include/python3.6m/talib Check the logs for full command output.
---------------------------------------------------------------------------
ModuleNotFoundError Traceback (most recent call last)
<ipython-input-56-ef2dd36041a5> in <module>
1 get_ipython().system('pip install talib')
----> 2 import talib
ModuleNotFoundError: No module named 'talib'
#phd is right. the TA-lib Python library's README.md's says
To use TA-Lib for python, you need to have the TA-Lib already installed.
I just created a new AML Compute Instance and was able to successfully import TA-lib for Python after first manually downloading, building and installing the TA-lib package on the VM. Some steps took around 5 min but YMMV
To install on the Azure ML Compute Instance.
Open the Compute Instance in Jupyter Labs
Open a new Terminal (File:New:Terminal)
Type the following commands (adapted from these linux instructions)
$ wget -c https://sourceforge.net/projects/ta-lib/files/ta-lib/0.4.0/ta-lib-0.4.0-src.tar.gz/download?use_mirror=phoenixnap -O - | tar -xz
$ cd ta-lib/
$ ./configure --prefix=/usr
$ make
$ sudo make install
install TA-lib Python wrapper pip install TA-lib (I had to do this twice for some reason)
open a notebook and run a cell with import talib
. your error means that you don't have the TA-lib back
I am trying to install pythonnet on a machine with no internet access. On a connected machine I downloaded pythonnet-master.zip from Github, and pythonnet-2.4.0.tar.gz from pypi.
When I try pip install pythonnet-2.4.0.tar.gz, I get the error The remote name could not be resolved: 'www.nuget.org.
I then used conda install nuget-3.2.0.10516-py34_0.tar.bz2 to take care of nuget. The installation was successful, but I still cannot install pythonnet.
My attempts using pythonnet-master.zip and conda install also failed. Any ideas would be helpful.
Here is the full error output:
(raman_env) C:\Users\Administrator\Desktop\eric\software>pip install pythonnet-2
.4.0.tar.gz
Processing c:\users\administrator\desktop\eric\software\pythonnet-2.4.0.tar.gz
Building wheels for collected packages: pythonnet
Building wheel for pythonnet (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: 'C:\ProgramData\Anaconda3\envs\raman_env\python.exe' -u -c 'import s
ys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\ADMINI~1\\AppData\\Local
\\Temp\\pip-req-build-8jks801m\\setup.py'"'"'; __file__='"'"'C:\\Users\\ADMINI~1
\\AppData\\Local\\Temp\\pip-req-build-8jks801m\\setup.py'"'"';f=getattr(tokenize
, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'
"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d 'C
:\Users\ADMINI~1\AppData\Local\Temp\pip-wheel-vi5w5zft' --python-tag cp37
cwd: C:\Users\ADMINI~1\AppData\Local\Temp\pip-req-build-8jks801m\
Complete output (44 lines):
running bdist_wheel
running build
running build_ext
Checking for updates from https://www.nuget.org/api/v2/.
The remote name could not be resolved: 'www.nuget.org'
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\ADMINI~1\AppData\Local\Temp\pip-req-build-8jks801m\setup.py",
line 658, in <module>
zip_safe=False,
File "C:\ProgramData\Anaconda3\envs\raman_env\lib\site-packages\setuptools\_
_init__.py", line 145, in setup
return distutils.core.setup(**attrs)
File "C:\ProgramData\Anaconda3\envs\raman_env\lib\distutils\core.py", line 1
48, in setup
dist.run_commands()
File "C:\ProgramData\Anaconda3\envs\raman_env\lib\distutils\dist.py", line 9
66, in run_commands
self.run_command(cmd)
File "C:\ProgramData\Anaconda3\envs\raman_env\lib\distutils\dist.py", line 9
85, in run_command
cmd_obj.run()
File "C:\Users\ADMINI~1\AppData\Local\Temp\pip-req-build-8jks801m\setup.py",
line 610, in run
return bdist_wheel.bdist_wheel.run(self)
File "C:\ProgramData\Anaconda3\envs\raman_env\lib\site-packages\wheel\bdist_
wheel.py", line 192, in run
self.run_command('build')
File "C:\ProgramData\Anaconda3\envs\raman_env\lib\distutils\cmd.py", line 31
3, in run_command
self.distribution.run_command(command)
File "C:\ProgramData\Anaconda3\envs\raman_env\lib\distutils\dist.py", line 9
85, in run_command
cmd_obj.run()
File "C:\ProgramData\Anaconda3\envs\raman_env\lib\distutils\command\build.py
", line 135, in run
self.run_command(cmd_name)
File "C:\ProgramData\Anaconda3\envs\raman_env\lib\distutils\cmd.py", line 31
3, in run_command
self.distribution.run_command(command)
File "C:\ProgramData\Anaconda3\envs\raman_env\lib\distutils\dist.py", line 9
85, in run_command
cmd_obj.run()
File "C:\ProgramData\Anaconda3\envs\raman_env\lib\distutils\command\build_ex
t.py", line 340, in run
self.build_extensions()
File "C:\ProgramData\Anaconda3\envs\raman_env\lib\distutils\command\build_ex
t.py", line 449, in build_extensions
self._build_extensions_serial()
File "C:\ProgramData\Anaconda3\envs\raman_env\lib\distutils\command\build_ex
t.py", line 474, in _build_extensions_serial
self.build_extension(ext)
File "C:\Users\ADMINI~1\AppData\Local\Temp\pip-req-build-8jks801m\setup.py",
line 245, in build_extension
self._install_packages()
File "C:\Users\ADMINI~1\AppData\Local\Temp\pip-req-build-8jks801m\setup.py",
line 424, in _install_packages
subprocess.check_call(cmd, shell=use_shell)
File "C:\ProgramData\Anaconda3\envs\raman_env\lib\subprocess.py", line 347,
in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'tools\nuget\nuget.exe update -self' re
turned non-zero exit status 1.
----------------------------------------
ERROR: Failed building wheel for pythonnet
Running setup.py clean for pythonnet
Failed to build pythonnet
Installing collected packages: pythonnet
Running setup.py install for pythonnet ... error
ERROR: Command errored out with exit status 1:
command: 'C:\ProgramData\Anaconda3\envs\raman_env\python.exe' -u -c 'import
sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\ADMINI~1\\AppData\\Loc
al\\Temp\\pip-req-build-8jks801m\\setup.py'"'"'; __file__='"'"'C:\\Users\\ADMINI
~1\\AppData\\Local\\Temp\\pip-req-build-8jks801m\\setup.py'"'"';f=getattr(tokeni
ze, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\
n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --recor
d 'C:\Users\ADMINI~1\AppData\Local\Temp\pip-record-31isrm6o\install-record.txt'
--single-version-externally-managed --compile
cwd: C:\Users\ADMINI~1\AppData\Local\Temp\pip-req-build-8jks801m\
Complete output (6 lines):
usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
or: setup.py --help [cmd1 cmd2 ...]
or: setup.py --help-commands
or: setup.py cmd --help
error: option --single-version-externally-managed not recognized
----------------------------------------
ERROR: Command errored out with exit status 1: 'C:\ProgramData\Anaconda3\envs\ra
man_env\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'
C:\\Users\\ADMINI~1\\AppData\\Local\\Temp\\pip-req-build-8jks801m\\setup.py'"'"'
; __file__='"'"'C:\\Users\\ADMINI~1\\AppData\\Local\\Temp\\pip-req-build-8jks801
m\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read
().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__,
'"'"'exec'"'"'))' install --record 'C:\Users\ADMINI~1\AppData\Local\Temp\pip-rec
ord-31isrm6o\install-record.txt' --single-version-externally-managed --compile C
heck the logs for full command output.
The setup.py of pythonnet is trying to run nugget.exe update --self which fails in you system because of the missing internet connection. I can think of two possible solutions:
Instead of a source install, try to download the right whl file. On pypi, there are only ones for cp37 and below. If you are running pyhton 3.8, you can find the right wheel file here
Extract the tar.gz archive and comment line 424: subprocess.check_call(cmd, shell=use_shell). Then run python setup.py install. This will prevent setup from trying to update nugget during the installation process
I followed the ROS official installation document for Mac, and when I came to the step of Resolving Dependencies, it occurred an error saying "Failed to build pygraphviz". Information on the screen is below:
Failed building wheel for pygraphviz
Running setup.py clean for pygraphviz
Failed to build pygraphviz
Installing collected packages: pygraphviz
Running setup.py install for pygraphviz ... error
Complete output from command /Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -u -c "import setuptools, tokenize;__file__='/private/tmp/pip-build-KKFcFY/pygraphviz/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-xRCOPn-record/install-record.txt --single-version-externally-managed --compile:
running install
Trying pkg-config
Package libcgraph was not found in the pkg-config search path.
Perhaps you should add the directory containing 'libcgraph.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libcgraph' found
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/private/tmp/pip-build-KKFcFY/pygraphviz/setup.py", line 87, in <module>
tests_require=['nose>=0.10.1', 'doctest-ignore-unicode>=0.1.0',],
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/private/tmp/pip-build-KKFcFY/pygraphviz/setup_commands.py", line 44, in modified_run
self.include_path, self.library_path = get_graphviz_dirs()
File "/private/tmp/pip-build-KKFcFY/pygraphviz/setup_extra.py", line 121, in get_graphviz_dirs
include_dirs, library_dirs = _pkg_config()
File "/private/tmp/pip-build-KKFcFY/pygraphviz/setup_extra.py", line 44, in _pkg_config
output = S.check_output(['pkg-config', '--libs-only-L', 'libcgraph'])
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 573, in check_output
raise CalledProcessError(retcode, cmd, output=output)
subprocess.CalledProcessError: Command '['pkg-config', '--libs-only-L', 'libcgraph']' returned non-zero exit status 1
----------------------------------------
Command "/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -u -c "import setuptools, tokenize;__file__='/private/tmp/pip-build-KKFcFY/pygraphviz/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-xRCOPn-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/tmp/pip-build-KKFcFY/pygraphviz
How can I do with it?
According to your log, maybe you need to install the package libcgraph.
In Ubuntu, try:
apt-cache search libcgraph
The output is:
libcgraph6 - rich set of graph drawing tools - cgraph library
You can install it with:
sudo apt-get install libcgraph6
On Mac, maybe you need to find the same package and install it.
Hope it works.