I want use Fabric when I product my project in AWS Ubuntu. When I read about Fabric, it required python 2.5~2.7, so I create Python virtualenv on Mac OS X:
pyenv virtualenv 2.7.5 fabric
mkdir fabric
and I run pip install fabric
(fabric)fabric $ pip install fabric
but it has 2 errors
Collecting fabric
[...]
configure: creating ./config.status
config.status: creating src/config.h
building 'Crypto.PublicKey._fastmath' extension
creating build/temp.macosx-10.11-x86_64-2.7
creating build/temp.macosx-10.11-x86_64-2.7/src
clang -fno-strict-aliasing -fwrapv -Wall -Wstrict-prototypes -std=c99 -O3 -fomit-frame-pointer -Isrc/ -I/usr/include/ -I/Users/hanminsoo/.pyenv/versions/2.7.5/include/python2.7 -c
src/_fastmath.c -o build/temp.macosx-10.11-x86_64-2.7/src/_fastmath.o
src/_fastmath.c:1545:20: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
else if (result < 0)
~~~~~~ ^ ~
src/_fastmath.c:1621:20: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
else if (result < 0)
~~~~~~ ^ ~
2 warnings generated.
clang -bundle -bundle_loader python.exe -L/usr/local/opt/readline/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/openssl/lib -L/Users/hanminsoo/.pyenv/versions/2.7.5/lib build/temp.macosx-10.11-x86_64-2.7/src/_fastmath.o -lgmp -o build/lib.macosx-10.11-x86_64-2.7/Crypto/PublicKey/_fastmath.so
ld: file not found: python.exe
clang: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'clang' failed with exit status 1
------------------------------------------------------
Failed building wheel for pycrypto
Running setup.py clean for pycrypto
Failed to build pycrypto
Installing collected packages: pycrypto, paramiko, fabric
Running setup.py install for pycrypto ... error
Complete output from command /Users/hanminsoo/.pyenv/versions/2.7.5/envs/fabric/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/private/var/folders/c5/d1_cb4j92f19h5q0_cbv7bpc0000gn/T/pip-build-vsA2vJ/pycrypto/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/c5/d1_cb4j92f19h5q0_cbv7bpc0000gn/T/pip-iE2TRI-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/hanminsoo/.pyenv/versions/2.7.5/envs/fabric/include/site/python2.7/pycrypto:
clang -fno-strict-aliasing -fwrapv -Wall -Wstrict-prototypes -std=c99 -O3 -fomit-frame-pointer -Isrc/ -I/usr/include/ -I/Users/hanminsoo/.pyenv/versions/2.7.5/include/python2.7 -c src/_fastmath.c -o build/temp.macosx-10.11-x86_64-2.7/src/_fastmath.o
src/_fastmath.c:1545:20: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
else if (result < 0)
~~~~~~ ^ ~
src/_fastmath.c:1621:20: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
else if (result < 0)
~~~~~~ ^ ~
2 warnings generated.
clang -bundle -bundle_loader python.exe -L/usr/local/opt/readline/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/openssl/lib -L/Users/hanminsoo/.pyenv/versions/2.7.5/lib build/temp.macosx-10.11-x86_64-2.7/src/_fastmath.o -lgmp -o build/lib.macosx-10.11-x86_64-2.7/Crypto/PublicKey/_fastmath.so
ld: file not found: python.exe
clang: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'clang' failed with exit status 1
-------------------------------------------------------
Command "/Users/hanminsoo/.pyenv/versions/2.7.5/envs/fabric/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/private/var/folders/c5/d1_cb4j92f19h5q0_cbv7bpc0000gn/T/pip-build-vsA2vJ/pycrypto/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/c5/d1_cb4j92f19h5q0_cbv7bpc0000gn/T/pip-iE2TRI-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/hanminsoo/.pyenv/versions/2.7.5/envs/fabric/include/site/python2.7/pycrypto" failed with error code 1 in /private/var/folders/c5/d1_cb4j92f19h5q0_cbv7bpc0000gn/T/pip-build-vsA2vJ/pycrypto/
Some people tell me "you should install pycrpto" so I install pycrpto
pip install pycrpto
but it has the same error when I pip install fabric. I found this solution link, so I run:
brew install gmp
export LIBRARY_PATH=/usr/local/lib
pip install pycrypto
but it has the same error and second solution is link
$ bunzip2 gmp-5.0.5.tar.bz2
but it has another error:
bunzip2: Can't open input file gmp-5.0.5.tar.bz2: No such file or directory.
I can't understand why fabric doesn't install...
It's a bug in Python <2.7.8. See pyenv#273.
You can fix it by patching _sysconfigdata.py:
$ export p=/Users/andrei/.pyenv/versions/2.7.6
$ sed -i -e "s#python.exe#${p}/bin/python2.7#g" "$p/lib/python2.7/_sysconfigdata.py"
Related
OSX High-Sierra: HIDAPI was successfully installed for python 2.7. Python3 was installed today:
Users-MacBook-Air:~ user$ python3 --version
Python 3.7.5
HIDAPI was reinstalled after the python3 installation:
brew reinstall hidapi
This restored the python script that was working with python2 and restored the barcode scanner script is working with:
sudo python2 test5.py
However attempts to run the script with python3 returns an error:
sudo python3 test5.py
ModuleNotFoundError: No module named 'hid'
An attempt install HIDAPI for python3 via pip3 failed:
pip3 install hidapi
Is it necessary and possible to install HIDAPI with PIP3 for python3?
Suggestions to overcome pip3 errors are appeciated: thank you
Error Messages:
sudo -H pip3 install hidapi returns:
Collecting hidapi
Using cached https://files.pythonhosted.org/packages/c1/86/89df0e8890f96eeb5fb68d4ccb14cb38e2c2d2cfd7601ba972206acd9015/hidapi-0.7.99.post21.tar.gz
Requirement already satisfied: setuptools>=19.0 in /usr/local/lib/python3.7/site-packages (from hidapi) (41.6.0)
Building wheels for collected packages: hidapi
Building wheel for hidapi (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /usr/local/opt/python/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/tmp/pip-install-9pj9tbky/hidapi/setup.py'"'"'; __file__='"'"'/private/tmp/pip-install-9pj9tbky/hidapi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/tmp/pip-wheel-sd48aazy --python-tag cp37
cwd: /private/tmp/pip-install-9pj9tbky/hidapi/
Complete output (23 lines):
running bdist_wheel
running build
running build_ext
cythoning hid.pyx to hid.c
/private/tmp/pip-install-9pj9tbky/hidapi/.eggs/Cython-0.29.14-py3.7-macosx-10.13-x86_64.egg/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /private/tmp/pip-install-9pj9tbky/hidapi/hid.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
building 'hid' extension
creating build
creating build/temp.macosx-10.13-x86_64-3.7
creating build/temp.macosx-10.13-x86_64-3.7/hidapi
creating build/temp.macosx-10.13-x86_64-3.7/hidapi/mac
Compiling with an SDK that doesn't seem to exist: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk
Please check your Xcode installation
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -framework IOKit -framework CoreFoundation -Ihidapi/hidapi -I/usr/local/include -I/usr/local/opt/openssl#1.1/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c hid.c -o build/temp.macosx-10.13-x86_64-3.7/hid.o
clang: warning: -framework IOKit: 'linker' input unused [-Wunused-command-line-argument]
clang: warning: -framework CoreFoundation: 'linker' input unused [-Wunused-command-line-argument]
clang: warning: no such sysroot directory: '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk' [-Wmissing-sysroot]
In file included from hid.c:4:
/usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/Python.h:25:10: fatal error: 'stdio.h' file not found
#include <stdio.h>
^~~~~~~~~
1 error generated.
error: command 'clang' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for hidapi
Running setup.py clean for hidapi
Failed to build hidapi
Installing collected packages: hidapi
Running setup.py install for hidapi ... error
ERROR: Command errored out with exit status 1:
command: /usr/local/opt/python/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/tmp/pip-install-9pj9tbky/hidapi/setup.py'"'"'; __file__='"'"'/private/tmp/pip-install-9pj9tbky/hidapi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/tmp/pip-record-qsgmu9xu/install-record.txt --single-version-externally-managed --compile
cwd: /private/tmp/pip-install-9pj9tbky/hidapi/
Complete output (21 lines):
running install
running build
running build_ext
skipping 'hid.c' Cython extension (up-to-date)
building 'hid' extension
creating build
creating build/temp.macosx-10.13-x86_64-3.7
creating build/temp.macosx-10.13-x86_64-3.7/hidapi
creating build/temp.macosx-10.13-x86_64-3.7/hidapi/mac
Compiling with an SDK that doesn't seem to exist: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk
Please check your Xcode installation
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -framework IOKit -framework CoreFoundation -Ihidapi/hidapi -I/usr/local/include -I/usr/local/opt/openssl#1.1/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c hid.c -o build/temp.macosx-10.13-x86_64-3.7/hid.o
clang: warning: -framework IOKit: 'linker' input unused [-Wunused-command-line-argument]
clang: warning: -framework CoreFoundation: 'linker' input unused [-Wunused-command-line-argument]
clang: warning: no such sysroot directory: '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk' [-Wmissing-sysroot]
In file included from hid.c:4:
/usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/Python.h:25:10: fatal error: 'stdio.h' file not found
#include <stdio.h>
^~~~~~~~~
1 error generated.
error: command 'clang' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/local/opt/python/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/tmp/pip-install-9pj9tbky/hidapi/setup.py'"'"'; __file__='"'"'/private/tmp/pip-install-9pj9tbky/hidapi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/tmp/pip-record-qsgmu9xu/install-record.txt --single-version-externally-managed --compile Check the logs for full command output.
pip3 install hidapi returns:
The first error is:
Building wheel for hidapi (setup.py) ... error
What is causing this error? and how to overcome?
WARNING: The directory '/Users/user/Library/Caches/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
WARNING: The directory '/Users/user/Library/Caches/pip' or its parent directory is not owned by the current user and caching wheels has been disabled. check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
Collecting hidapi
Downloading https://files.pythonhosted.org/packages/c1/86/89df0e8890f96eeb5fb68d4ccb14cb38e2c2d2cfd7601ba972206acd9015/hidapi-0.7.99.post21.tar.gz (51kB)
|████████████████████████████████| 61kB 2.3MB/s
Requirement already satisfied: setuptools>=19.0 in /usr/local/lib/python3.7/site-packages (from hidapi) (41.6.0)
Building wheels for collected packages: hidapi
Building wheel for hidapi (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /usr/local/opt/python/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/tmp/pip-install-7lm8qgnn/hidapi/setup.py'"'"'; __file__='"'"'/private/tmp/pip-install-7lm8qgnn/hidapi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/tmp/pip-wheel-f9nrghcu --python-tag cp37
cwd: /private/tmp/pip-install-7lm8qgnn/hidapi/
Complete output (23 lines):
running bdist_wheel
running build
running build_ext
cythoning hid.pyx to hid.c
/private/tmp/pip-install-7lm8qgnn/hidapi/.eggs/Cython-0.29.14-py3.7-macosx-10.13-x86_64.egg/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /private/tmp/pip-install-7lm8qgnn/hidapi/hid.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
building 'hid' extension
creating build
creating build/temp.macosx-10.13-x86_64-3.7
creating build/temp.macosx-10.13-x86_64-3.7/hidapi
creating build/temp.macosx-10.13-x86_64-3.7/hidapi/mac
Compiling with an SDK that doesn't seem to exist: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk
Please check your Xcode installation
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -framework IOKit -framework CoreFoundation -Ihidapi/hidapi -I/usr/local/include -I/usr/local/opt/openssl#1.1/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c hid.c -o build/temp.macosx-10.13-x86_64-3.7/hid.o
clang: warning: -framework IOKit: 'linker' input unused [-Wunused-command-line-argument]
clang: warning: -framework CoreFoundation: 'linker' input unused [-Wunused-command-line-argument]
clang: warning: no such sysroot directory: '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk' [-Wmissing-sysroot]
In file included from hid.c:4:
/usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/Python.h:25:10: fatal error: 'stdio.h' file not found
#include <stdio.h>
^~~~~~~~~
1 error generated.
error: command 'clang' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for hidapi
Running setup.py clean for hidapi
Failed to build hidapi
Installing collected packages: hidapi
Running setup.py install for hidapi ... error
ERROR: Command errored out with exit status 1:
command: /usr/local/opt/python/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/tmp/pip-install-7lm8qgnn/hidapi/setup.py'"'"'; __file__='"'"'/private/tmp/pip-install-7lm8qgnn/hidapi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/tmp/pip-record-9hm4q3f6/install-record.txt --single-version-externally-managed --compile
cwd: /private/tmp/pip-install-7lm8qgnn/hidapi/
Complete output (21 lines):
running install
running build
running build_ext
skipping 'hid.c' Cython extension (up-to-date)
building 'hid' extension
creating build
creating build/temp.macosx-10.13-x86_64-3.7
creating build/temp.macosx-10.13-x86_64-3.7/hidapi
creating build/temp.macosx-10.13-x86_64-3.7/hidapi/mac
Compiling with an SDK that doesn't seem to exist: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk
Please check your Xcode installation
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -framework IOKit -framework CoreFoundation -Ihidapi/hidapi -I/usr/local/include -I/usr/local/opt/openssl#1.1/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c hid.c -o build/temp.macosx-10.13-x86_64-3.7/hid.o
clang: warning: -framework IOKit: 'linker' input unused [-Wunused-command-line-argument]
clang: warning: -framework CoreFoundation: 'linker' input unused [-Wunused-command-line-argument]
clang: warning: no such sysroot directory: '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk' [-Wmissing-sysroot]
In file included from hid.c:4:
/usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/Python.h:25:10: fatal error: 'stdio.h' file not found
#include <stdio.h>
^~~~~~~~~
1 error generated.
error: command 'clang' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/local/opt/python/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/tmp/pip-install-7lm8qgnn/hidapi/setup.py'"'"'; __file__='"'"'/private/tmp/pip-install-7lm8qgnn/hidapi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/tmp/pip-record-9hm4q3f6/install-record.txt --single-version-externally-managed --compile Check the logs for full command output.
Us
UPDATE
The module:
pip3 install hidapi==0.7.99.post14
indicated several build error but ultimately indicated:
Installing collected packages: Cython, hidapi
Running setup.py install for hidapi ... done
Successfully installed Cython-0.29.14 hidapi-0.7.99.post14
Tested & Verified python3 process HID traffic.
https://github.com/trezor/cython-hidapi/issues/65 This seems to be bug in the software.
Hacky solution in the meanwhile is to get the MacOSX10.14 sdk that is bundled with Xcode 10.
CORRECTIVE ACTION
Install Xcode 10.1 (High-Sierra Compatible) from the Apple website Be sure to install Xcode to /Applications directory. If it is not installed to /Applications move it from /Downloads to /Applications.
The path xcode-select -p should be corrected using
sudo xcode-select -switch /Applications/Xcode.app/Contents/Developer/
The command:
/usr/bin/xcodebuild -version
should return:
Xcode 10.1
Build version 10B61
With Xcode properly in to support pip3:
$ pip3 install hidapi
Collecting hidapi
Using cached https://files.pythonhosted.org/packages/c1/86/89df0e8890f96eeb5fb68d4ccb14cb38e2c2d2cfd7601ba972206acd9015/hidapi-0.7.99.post21.tar.gz
Requirement already satisfied: setuptools>=19.0 in ./env/lib/python3.7/site-packages (from hidapi) (41.2.0)
Installing collected packages: hidapi
Running setup.py install for hidapi ... done
Successfully installed hidapi-0.7.99.post21
If you want a system-wide installation, you need to run pip3 with elevated rights.
sudo -H pip3 install hidapi
I am trying to install big float on OS X but i am encountering multiple issues.
I have installed amp without any problem, but when I have tried to install mpfr I got this error:
Warning: mpfr-3.1.5 already installed, it's just not linked.
What does this mean? (I am using Homebrew).
Then, obviously, if I try to install bigfloat it doesn't work and i get this error:
Collecting bigfloat
Downloading bigfloat-0.3.0.tar.gz (216kB)
100% |████████████████████████████████| 225kB 1.6MB/s
Installing collected packages: bigfloat
Running setup.py install for bigfloat ... error
Complete output from command /Users/name/anaconda2/bin/python -u -c "import setuptools, tokenize;__file__='/private/tmp/pip-build-VCyOBn/bigfloat/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" build_ext -I/usr/local/include -L/usr/local/lib install --record /tmp/pip-K9AHsP-record/install-record.txt --single-version-externally-managed --compile:
running build_ext
building 'mpfr' extension
creating build
creating build/temp.macosx-10.7-x86_64-2.7
gcc -fno-strict-aliasing -I/Users/name/anaconda2/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/include -I/Users/name/anaconda2/include/python2.7 -c mpfr.c -o build/temp.macosx-10.7-x86_64-2.7/mpfr.o
In file included from /usr/local/lib/gcc/x86_64-apple-darwin15.6.0/6.2.0/include-fixed/syslimits.h:7:0,
from /usr/local/lib/gcc/x86_64-apple-darwin15.6.0/6.2.0/include-fixed/limits.h:34,
from /Users/name/anaconda2/include/python2.7/Python.h:19,
from mpfr.c:16:
/usr/local/lib/gcc/x86_64-apple-darwin15.6.0/6.2.0/include-fixed/limits.h:168:61: fatal error: limits.h: No such file or directory
#include_next <limits.h> /* recurse down to the real one */
^
compilation terminated.
error: command 'gcc' failed with exit status 1
----------------------------------------
Command "/Users//anaconda2/bin/python -u -c "import setuptools, tokenize;__file__='/private/tmp/pip-build-VCyOBn/bigfloat/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" build_ext -I/usr/local/include -L/usr/local/lib install --record /tmp/pip-K9AHsP-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/tmp/pip-build-VCyOBn/bigfloat/
You must install python-devel
In OS X try to uninstall and install again:
brew uninstall python
brew install python
Also according to this issue, Osx GCC (which is just a symlink to clang) doesn't ship with OpenMP support out of the box. You can install GCC with OpenMP.
brew install gcc --without-multilib
I am trying to install getch via pip and I have a clang error :
python -m pip install getch
Collecting getch
Using cached getch-1.0.tar.gz
Installing collected packages: getch
Running setup.py install for getch ... error
Complete output from command /usr/local/opt/python/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/private/var/folders/qm/gj1n93fd7rg8rgz1ldq19gm80000gn/T/pip-build-RYKX8n/getch/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/qm/gj1n93fd7rg8rgz1ldq19gm80000gn/T/pip-uEGRgA-record/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_ext
building 'getch' extension
creating build
creating build/temp.macosx-10.10-x86_64-2.7
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.10/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c getchmodule.c -o build/temp.macosx-10.10-x86_64-2.7/getchmodule.o
getchmodule.c:36:6: warning: unused variable 'ok' [-Wunused-variable]
int ok = PyArg_ParseTuple(args, "");
^
getchmodule.c:43:6: warning: unused variable 'ok' [-Wunused-variable]
int ok = PyArg_ParseTuple(args, "");
^
getchmodule.c:55:4: error: use of undeclared identifier 'PyModuleDef_HEAD_INIT'
PyModuleDef_HEAD_INIT,
^
getchmodule.c:54:27: error: variable has incomplete type 'struct PyModuleDef'
static struct PyModuleDef getchmodule = {
^
getchmodule.c:54:15: note: forward declaration of 'struct PyModuleDef'
static struct PyModuleDef getchmodule = {
^
getchmodule.c:64:9: warning: implicit declaration of function 'PyModule_Create' is invalid in C99 [-Wimplicit-function-declaration]
return PyModule_Create(&getchmodule);
^
3 warnings and 2 errors generated.
error: command 'clang' failed with exit status 1
----------------------------------------
Command "/usr/local/opt/python/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/private/var/folders/qm/gj1n93fd7rg8rgz1ldq19gm80000gn/T/pip-build-RYKX8n/getch/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/qm/gj1n93fd7rg8rgz1ldq19gm80000gn/T/pip-uEGRgA-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/qm/gj1n93fd7rg8rgz1ldq19gm80000gn/T/pip-build-RYKX8n/getch/
I am using Mac so cannot use msvcrt.
Thank you for your help.
The installation is failing because it's looking for python3 headers. Looking at https://pypi.python.org/pypi/getch there are two source distributions listed, getch-1.0-python2.tar.gz and getch-1.0.tar.gz.
For python 2 you need the former of those, but it looks like the latter one is being chosen (same thing happens for me). I'm not sure if/how pip is supposed to be able to know how to choose the correct one, but you can choose manually:
copying the link,
pip install https://pypi.python.org/packages/source/g/getch/getch-1.0-python2.tar.gz#md5=586ea0f1f16aa094ff6a30736ba03c50
works for me
i'm new to python. I'd like to use pysnmp module, so i tried to install it with pip but i'm getting errors from it :
Failed building wheel for pycrypto
I tried on multiple system (Ubuntu, Debian and RH) and I always get the same error. How can i install pysnmp ? Or are there any other alternative to work with snmp with python ?
Shell Command :
sudo -H pip install pysnmp
Result :
...
configure: creating ./config.status
config.status: creating src/config.h
warning: GMP or MPIR library not found; Not building Crypto.PublicKey._fastm ath.
building 'Crypto.Hash._MD2' extension
creating build/temp.linux-x86_64-3.4
creating build/temp.linux-x86_64-3.4/src
x86_64-linux-gnu-gcc -pthread -fwrapv -Wall -Wstrict-prototypes -fstack-prot ector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOUR CE=2 -fPIC -std=c99 -O3 -fomit-frame-pointer -Isrc/ -I/usr/include/python3.4m -c src/MD2.c -o build/temp.linux-x86_64-3.4/src/MD2.o
src/MD2.c:31:20: fatal error: Python.h: No such file or directory
#include "Python.h"
^
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Command "/usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip- build-7gwchpkq/pycrypto/setup.py';exec(compile(getattr(tokenize, 'open', open)(_ _file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp /pip-6mlabkyq-record/install-record.txt --single-version-externally-managed --co mpile" failed with error code 1 in /tmp/pip-build-7gwchpkq/pycrypto/
src/MD2.c:31:20: fatal error: Python.h: No such file or directory
The actual error is that you do not have the dev files for python language (python.h not found).
So, install python-dev:
sudo apt-get install python-dev
Try:
sudo pip install setuptools --upgrade
Try,
wget https://bootstrap.pypa.io/ez_setup.py
python ez_setup.py
easy_install pysnmp
I'm trying to install the fastcluster Python library, but I'm running into a compilation error.
$ pip install fastcluster
produces the following output:
Collecting fastcluster
Using cached fastcluster-1.1.17.tar.gz
Building wheels for collected packages: fastcluster
Running setup.py bdist_wheel for fastcluster
Complete output from command /home/ruser/dedupe/venv/bin/python -c "import setuptools;__file__='/tmp/pip-build-9ejthV/fastcluster/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpXVyTyspip-wheel-:
Version: 1.1.17
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.7
copying fastcluster.py -> build/lib.linux-x86_64-2.7
running build_ext
building '_fastcluster' extension
creating build/temp.linux-x86_64-2.7
creating build/temp.linux-x86_64-2.7/src
x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/include/python2.7 -c src/fastcluster_python.cpp -o build/temp.linux-x86_64-2.7/src/fastcluster_python.o
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]
src/fastcluster_python.cpp:38:31: fatal error: numpy/arrayobject.h: No such file or directory
#include <numpy/arrayobject.h>
^
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Failed building wheel for fastcluster
Failed to build fastcluster
Installing collected packages: fastcluster
Running setup.py install for fastcluster
Complete output from command /home/ruser/dedupe/venv/bin/python -c "import setuptools, tokenize;__file__='/tmp/pip-build-9ejthV/fastcluster/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-85ovHC-record/install-record.txt --single-version-externally-managed --compile --install-headers /home/ruser/dedupe/venv/include/site/python2.7/fastcluster:
Version: 1.1.17
running install
running build
running build_py
running build_ext
building '_fastcluster' extension
x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/include/python2.7 -c src/fastcluster_python.cpp -o build/temp.linux-x86_64-2.7/src/fastcluster_python.o
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]
src/fastcluster_python.cpp:38:31: fatal error: numpy/arrayobject.h: No such file or directory
#include <numpy/arrayobject.h>
^
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Command "/home/ruser/dedupe/venv/bin/python -c "import setuptools, tokenize;__file__='/tmp/pip-build-9ejthV/fastcluster/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-85ovHC-record/install-record.txt --single-version-externally-managed --compile --install-headers /home/ruser/dedupe/venv/include/site/python2.7/fastcluster" failed with error code 1 in /tmp/pip-build-9ejthV/fastcluster
What would cause this? Something about setting include directories?
The issue you're seeing with installing fastcluster is related to this previous question - the compiler is not looking in the correct directory to find the numpy headers. You can use more or less the same solution as given in the accepted answer:
Download and untar the source for fastcluster
$ pip install fastcluster --download='.'
$ tar -xzf fastcluster-1.1.17.tar.gz
$ cd fastcluster-1.1.17/
Edit the setup.py file to add the output of numpy.get_include() to the include_dirs= argument for the Extension:
import numpy
...
ext_modules=[Extension('_fastcluster',
['src/fastcluster_python.cpp'],
extra_compile_args=['/EHsc'] if os.name=='nt' else [],
include_dirs=[numpy.get_include()]
)]
Install fastcluster:
$ python setup.py install
Let the fastcluster maintainer know that his package is broken :-)