So I'm setting up iGraph, and I'm having issues with the plot showing up.
The simple code is this
import iGraph
igraph.plot(igraph.Graph.Tree(127,2), layout='tree')
this will plot when i type it directly into python compiler (i'm using canopy)
But when trying to run it through the intpreter it does not display?
I assume this is a very basic issue but cannot seem to understand why it is occurring.
The Canopy GUI's default graphical backend is Qt. Most likely igraph uses a different graphical backend which conflicts with Qt. Try disabling Canopy's default Pylab mode in the Preferences dialog (Python tab). For more information, see https://support.enthought.com/hc/en-us/articles/204469880
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I'm graphing some stuff with matplotlib and I need to be able to zoom in on the graph. But VSCode just renders it in its Python Interactive window that I can't do anything with. Is there a way to open graphs in a their own window that allows for scaling and things?
I'm a developer on this extension. We don't currently support popping out graphs. If you want to vote up the issue, we have an issue filed for this support here:
https://github.com/Microsoft/vscode-python/issues/4976
Until this support is added there is a bit of a work around. You can manually use the %matplotlib ipython magic to update to non-inline rendering. Then when you show plots they will be shown in a popup window. Like so:
I can't tell you exactly what command to use as it might vary based on what you have installed in your environment. But %matplotlib auto or %matplotlib qt would be good places to try starting with.
Plotly says it is a web library. Matplotlib does support Wxpython but comparatively, it is too low level. Is there any way to integrate Plotly inside a Wxpython GUI or are there any alternative for it?
You might be able to use Plotly's ability to export plots to images to get the plots into wxPython:
https://plot.ly/python/offline/#static-image-export
If you need the live plotting though, then you will need to use Webview:
https://wxpython.org/Phoenix/docs/html/wx.html2.WebView.html
I also see that Plotly can now be used offline, so if you used that plus Webview, it should work.
Wxpython webview doesn't support 3-d graphs from plotly.
For 3-d graphs, I used cefpython. It embeds a full chromium browser inside python application. wxpython example can be found here: https://github.com/cztomczak/cefpython/blob/master/examples/wxpython.py.
I used plotly offline, and read the file inside cefpython.
I'm using matplotlib 2.2.2. with ipython 3.6.5 (both from anaconda) for data analysis. Whenever I create a figure window with some boilerplate code like
import matplotlib.pyplot as plt
plt.ion()
plt.plot()
I get a nice figure window to which I can only switch focus by using with the mouse. These figure windows are not part of the list of macosx application switcher (accessible through cmd+tab shortcut). I've tried the osx and the qt5 backends, but I get the same results as described before.
Do you know any solution/workaround for this? It would be very practical to be able to switch focus between figure windows from the keyboard, as I often find myself browsing through the figure windows looking for the graph I'm interested in. Moreover, if matplotlib's figure windows were actual cocoa/macos windows, it would be extremely useful to those out there who use tiling window managers on osx.
I have a Python script that generates an interactive matplotlib plot with several sliders and radio buttons using the matplotlib.widgets submodule. I'd like to let others play with the resulting plot without having to install python, scipy, numpy, and matplotlib.
I first tried converting my python script to a stand-alone executable that I could distribute. This turned out to be a nightmare - every package I tried (pyinstaller, py2exe, cx_Freeze) failed for one reason or another. The main issue I had was with integrating various scipy and matplotlib libraries, and I'm now very pessimistic about successfully "freezing" my interactive plot.
My next idea was to see if I could get some interactivity through a web browser. Using an IPython notebook with the third-party package JSAnimation initially seemed very promising (http://nbviewer.ipython.org/github/jakevdp/JSAnimation/blob/master/animation_example.ipynb), but it seems that the package only supports the matplotlib "animate" function. This doesn't quite fit the bill for what I'd like to do, as I have multiple sliders which 1) doesn't seem to be supported by this package, and 2) even if supported, would likely result in too many static figures to pre-render effectively, since any such arrangement would require snapshots for every possible combination of the three variables.
Any ideas for how to get this interactive matplotlib plot to others without requiring them to install Python?
I currently have a GUI built in wxPython with several sections, one of which displays a .png image of a plot:
self.plot = wx.BitmapButton(self.pane_system, -1, wx.Bitmap("/home/myname/projects/newton/plot/src/graph.png", wx.BITMAP_TYPE_ANY))
In another part of the GUI, there is a place where I can edit parameters. The current setup is that When I change the parameters and press enter, the code tells Gnuplot to re-plot and save the new plot to the graph.png file, then update the GUI to show the updated image.
I have several general questions:
I want to migrate gnuplot to matplotlib for the following reason: If I use gnuplot, the machine that is running the executable must have gnuplot installed on their machine. On the other hand, matplotlib is a python module, so I don't have to worry about installing graphical packages on the other machines. Is this assumption correct?
How can I modify my wxPython GUI window to show the matplotlib plot? I found tutorials several telling me how to create a new panel with a matplotlib plot, but I would like to simply have it appear where the old plot was. I think I can make matplotlib save the plot to an image file just as I did in gnuplot. Is it generally a good idea to save the plot as an image and update the GUI, or are there other (faster) best practices for updating plots? One drawback of using image files (as in the above code) is that they do not resize when I resize the GUI window.
If I package this as an executable, will I have to install wxPython/Python on a Windows machine to make the executable run?
Taking your questions in order:
1.) Yes matplotlib is a contained python module. It does have external dependancies but in Windows these dependencies are packaged with the matplotlib install. Do you need to worry about these when you install on other machines? That depends on how you are going to install. Are you packing to an exe? Having the end users install Python and matplotlib? As an example you can package matplotlib into your exe with py2exe, see here. Of course you'll have to customize those scripts for your backend, wx.
2.) You are seeing the panels with plots because matplotlib provides the FigureCanvasWxAgg, which is a wxWidget derived from wxPanel that plays nice with matplotlib. The advantages of using it are that you can set handlers for stuff like resize and painting.
Your wxBitMapButton, though is looking for a wxBitmap for the image. You might be able to give it a file handle (cStringIO.StringIO) to a matplotlib plot and eliminate the need to write a file to disk. You also could probably hook it's resize event and get matplotlib to redraw the figure to the appropriate size. You aren't going to have the amount of flexibility as using the FigureCanvasWxAgg. I can't research any of this, though, as it seems the wxPython web-site is down.
3.) You can package wxPython into executable. How depends on what packager you are using. I've done this with py2exe many times.