pip installs packages successfully, but executables not found from command line - python

I am working on mac OS X Yosemite, version 10.10.3.
I installed python2.7 and pip using macport as done in
http://johnlaudun.org/20150512-installing-and-setting-pip-with-macports/
I can successfully install packages and import them inside my python environment and python scripts. However any executable associated with a package that can be called from the command line in the terminal are not found.
Does anyone know what might be wrong? (More details below)
For example while installing a package called "rosdep" as instructed in http://wiki.ros.org/jade/Installation/Source
I can run: sudo pip install -U rosdep
which installs without errors and corresponding files are located in /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages
However if I try to run : sudo rosdep init,
it gives an error : "sudo: rosdep: command not found"
This is not a package specific error. I get this for any package installed using pip on my computer. I even tried adding
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages
to my $PATH.
But the executables are not found on the command line, even though the packages work perfectly from within python.

I know the question asks about macOS, but here is a solution for Linux users who arrive here via Google.
I was having the issue described in this question, having installed the pdfx package via pip.
When I ran it however, nothing...
pip list | grep pdfx
pdfx (1.3.0)
Yet:
which pdfx
pdfx not found
The problem on Linux is that pip install ... drops scripts into ~/.local/bin and this is not on the default Debian/Ubuntu $PATH.
Here's a GitHub issue going into more detail: https://github.com/pypa/pip/issues/3813
To fix, just add ~/.local/bin to your $PATH, for example by adding the following line to your .bashrc file:
export PATH="$HOME/.local/bin:$PATH"
After that, restart your shell and things should work as expected.

Solution
Based on other answers, for linux and mac you can run the following:
echo "export PATH=\"`python3 -m site --user-base`/bin:\$PATH\"" >> ~/.bashrc
source ~/.bashrc
instead of python3 you can use any other link to python version: python, python2.7, python3.6, python3.9, etc.
instead of .bashrc, choose the rc file from your favourite shell.
Explanation
In order to know where the user packages are installed in the current OS (win, mac, linux), we run:
python3 -m site --user-base
We know that the scripts go to the bin/ folder where the packages are installed.
So we concatenate the paths:
echo `python3 -m site --user-base`/bin
Then we export that to an environment variable.
export PATH=\"`python3 -m site --user-base`/bin:\$PATH\"
Finally, in order to avoid repeating the export command we add it to our .bashrc file and we run source to run the new changes, giving us the suggested solution mentioned at the beginning.

On macOS with the default python installation you need to add /Users/<you>/Library/Python/2.7/bin/ to your $PATH.
Add this to your .bash_profile:
export PATH="/Users/<you>/Library/Python/2.7/bin:$PATH"
That's where pip installs the executables.
Tip: For non-default python version which python to find the location of your python installation and replace that portion in the path above. (Thanks for the hint Sanket_Diwale)

check your $PATH
tox has a command line mode:
audrey:tests jluc$ pip list | grep tox
tox (2.3.1)
where is it?
(edit: the 2.7 stuff doesn't matter much here, sub in any 3.x and pip's behaving pretty much the same way)
audrey:tests jluc$ which tox
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/tox
and what's in my $PATH?
audrey:tests jluc$ echo $PATH
/opt/chefdk/bin:/opt/chefdk/embedded/bin:/opt/local/bin:..../opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin...
Notice the /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin? That's what allows finding my pip-installed stuff
Now, to see where things are from Python, try doing this (substitute rosdep for tox).
$python
>>> import tox
>>> tox.__file__
that prints out:
'/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/tox/__init__.pyc'
Now, cd to the directory right above lib in the above. Do you see a bin directory? Do you see rosdep in that bin? If so try adding the bin to your $PATH.
audrey:2.7 jluc$ cd /opt/local/Library/Frameworks/Python.framework/Versions/2.7
audrey:2.7 jluc$ ls -1
output:
Headers
Python
Resources
bin
include
lib
man
share

If you're installing using --user (e.g. pip3.6 install --user tmuxp), it is possible to get the platform-specific user install directory from Python itself using the site module. For example, on macOS:
$ python2.7 -m site --user-base
/Users/alexp/Library/Python/2.7
By appending /bin to this, we now have the path where package executables will be installed. We can dynamically populate the PATH in your shell's rc file based on the output; I'm using bash, but with any luck this is portable:
# Add Python bin directories to path
python3.6 -m site &> /dev/null && PATH="$PATH:`python3.6 -m site --user-base`/bin"
python2.7 -m site &> /dev/null && PATH="$PATH:`python2.7 -m site --user-base`/bin"
I use the precise Python versions to reduce the chance of the executables just "disappearing" when Python upgrades a minor version, e.g. from 3.5 to 3.6. They'll disappear because, as can be seen above, the user installation path may include the Python version. So while python3 could point to 3.5 or 3.6, python3.6 will always point to 3.6. This needs to be kept in mind when installing further packages, e.g. use pip3.6 over pip3.
If you don't mind the idea of packages disappearing, you can use python2 and python3 instead:
# Add Python bin directories to path
# Note: When Python is upgraded, packages may need to be re-installed
# or Python versions managed.
python3 -m site &> /dev/null && PATH="$PATH:`python3 -m site --user-base`/bin"
python2 -m site &> /dev/null && PATH="$PATH:`python2 -m site --user-base`/bin"

The Installing Packages tutorial on python.org describes how to locate the binary directory:
On Windows
You can find the user base binary directory by running
python -m site --user-site and replacing site-packages with Scripts.
For example, this could return
C:\Users\Username\AppData\Roaming\Python36\site-packages so you
would need to set your PATH to include
C:\Users\Username\AppData\Roaming\Python36\Scripts.
On Linux and macOS
On Linux and macOS you can find the user base binary directory by
running python -m site --user-base and adding bin to the end. For
example, this will typically print ~/.local (with ~ expanded to the
absolute path to your home directory) so you’ll need to add
~/.local/bin to your PATH.

I stumbled upon this question because I created, successfully built and published a PyPI Package, but couldn't execute it after installation. The $PATHvariable was correctly set.
In my case the problem was that I hadn't set the entry_pointin the setup.py file:
entry_points = {'console_scripts':
['YOUR_CONSOLE_COMMAND=MODULE_NAME.FILE_NAME:FUNCTION_NAME'],},

On Windows, you need to add the path %USERPROFILE%\AppData\Roaming\Python\Scripts to your path.

Windows and Python 3.9 from MS Store
I have a different path with python -m site --user-base and python -m site - yes, the second command without --user-base to get all sites - as the other answers here state:
C:\Users\<your User>\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.9_qbz5n2kfra8p0\LocalCache\local-packages\Python39\site-packages
Why is my path different
Because I installed python from MS Store
Solution
Put the above path in your path and replace site-packages with scripts

When you install Python or Python3 using MacOS installer (downloaded from Python website) - it adds an exporter to your ~/.profile script. All you need to do is just source it. Restarting all the terminals should also do the trick.
WARNING - I believe it's better to just use pip3 with Python3 - for future benefits.
If you already have Python3 installed, the following steps work for me on macOS Mojave:
Install ansible first using sudo - sudo -H pip3 install ansible
you create a symlink to the Python's bin path
sudo ln -s /Library/Frameworks/Python.framework/Versions/Current/bin /Library/Frameworks/Python.framework/current_python_bin
and staple it to .profile
export PATH=$PATH:/Library/Frameworks/Python.framework/current_python_bin
run source ~/.profile and restart all terminal shells.
Type ansible --version

In addition to adding python's bin directory to $PATH variable, I also had to change the owner of that directory, to make it work. No idea why I wasn't the owner already.
chown -R ~/Library/Python/

I solve the problem!
Use pip3 instead pip.
pip3 install foobaz
vim ~/.zshrc and add:
export PATH="/Users/your_name/Library/Python/3.8/bin:$PATH"
source ~/.zshrc
Now MacOS has shifted the default terminal from bash to zsh. Therefore, you have to source zshrc but not bashrc or bash_profile.
foobaz -v

had the same issue with macOS Monterey. I had to modify my .bash_profile file and add the following entry
export PATH="~/Library/Python/3.8/bin:$PATH"
The default python version on macOS Monterey is 3.8, but you will have to double check your python version to make sure you're using the correct one

Related

brew installs latest python3 but python3 not updated?

Hello I'm trying to upgrade my python from macos
I enter command 'brew upgrade python3' and it tells me the latest version is installed (Warning: python3 3.9.1_8 already installed)
but then when I type 'python3 -V' it returns 'Python 3.6.1'
and when I try to 'brew link --overwrite python#3.9' the operation proceeds successfully but there is still no change.
What am I missing? Why am I not able to use Python3.9?
Most likely the PATH variable in your environment is not configured correctly and the shell is finding the wrong python3.
You can check for the path to the current python3 command using:
which python3
Most likely the output will not be pointing at the brew installation that is usually:
/usr/local/bin/python3
If that was the case check the PATH variable in your environment using:
echo $PATH
or:
env | grep PATH
and check whether /usr/local/bin is present in the PATH variable and that it has precedence over the folder where your current python3 is located.
Change it by edited the .profile file in your home directory by adding:
export PATH="/usr/local/bin:$PATH"
I highly recommend that you install and use pyenv. It is somewhat standard way of managing multiple Python versions on your Mac. I have 4 different Python versions, and switch from one to the other with ease. It can do a lot more than just set your global Python version. Check it out: https://github.com/pyenv/pyenv. It can be installed with brew pyenv.

Why can't I find ansible when I install it using setup.py?

Because I had some trouble with Ansible (I'm on mac) which seemed to be fixed in the latest dev version today I uninstalled ansible through pip (sudo pip uninstall ansible) and reinstalled the latest dev version from the github repo using the classic setup.py method, which seemed to end successfully (full output here.
So then I tried using it:
$ ansible --version
-bash: ansible: command not found
$ which ansible
$
I checked where it is installed. From the full output I linked to above I found that it is installed in /usr/local/lib/python2.7/site-packages, and indeed in there I find an egg:
$ ls -l /usr/local/lib/python2.7/site-packages | grep ansible
drwxr-xr-x 4 root admin 136 Aug 22 16:33 ansible-2.4.0-py2.7.egg
When I start Python and check the site-packages folder I find a different folder:
>>> import site; print site.getsitepackages()[0]
/usr/local/Cellar/python/2.7.13_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages
but that is a symlink to the same folder:
$ ls -l /usr/local/Cellar/python/2.7.13_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages
lrwxr-xr-x 1 hielke admin 54 Aug 13 22:36 /usr/local/Cellar/python/2.7.13_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages -> ../../../../../../../../../lib/python2.7/site-packages
So I guess the problem is that no symlink is created to the ansible package in /usr/local/bin/. But I'm unsure how I could create such a symlink and why it wouldn't appear in the first place.
Does anybody know how I can move forward from here? All tips are welcome!
When you invoke ansible from the shell, bash will search in your $PATH for a file named ansible that is executable. This may not be the only issue, but this is the immediate cause for the error you're seeing. The .egg file itself is not an executable, it's just a file used for distributing the code.
If ansible has been installed correctly, you should be able to find it by using locate or the OSX Finder GUI. The name should match exactly, with no file extensions. You will probably also find ansible-connection, ansible-console, etc. in the same place where you find the ansible executable. If you find it, great! Test it out and add that directory to your $PATH in a terminal like so:
export PATH=$PATH:/path/to/ansible
Where /path/to/ansible is the directory where you found the executables. This change to the $PATH variable is temporary, and will go away when you close your shell. If you can now run ansible from bash, then you can make the change permanent by adding that export to the end of your $HOME/.bash_profile file, or by adding a rule in /etc/paths.d (recommended by Apple). See more on how exactly to do those here if you are unfamiliar with them.
Now, if that's not the problem and you can't find the ansible executable, then the installation itself is your problem. You might also try using a virtual environment (if you have it installed) to make sure that the version you're pulling from github isn't broken:
git clone https://github.com/ansible/ansible.git
cd ansible
virtualenv venv
source venv/bin/activate
pip install .
which ansible
As of this writing, the above gives me a working ansible install.
For those using the Windows 10 Ubuntu terminal, running this command should fix the issue:
export PATH=$PATH:~/.local/bin
Find where ansible reside on your Mac. Most times its /Users/<yourusername>/Library/Python/3.7/bin
or /Users/<yourusername>/Library/Python/2.7/bin. Then ...
export PATH=$PATH:/Users/<yourusername>/Library/Python/3.7/bin
You can store this in your .bashrc file.
Well, I think you just need to create a soft link
ln -s /Users/${yourname}/Library/Python/${python version}/bin/ansible /usr/local/bin/ansible
pip3 install ansible --user
this installs in ~/.local. just include this in PATH, it will work
example: export PATH="$PATH:~/.local/bin"
I faced same issue when I installed ansible. Run the below commands to solve the issue. But we have to active each time when we open a bash session if we want to use ansible.
$ python -m virtualenv ansible
$ source ansible/bin/activate
$ pip install ansible
I'm using zsh so in my /Users/arojas/.zshrc I add this line that's where my Ansible got installed by Python
export PATH="$PATH:$HOME/Library/Python/3.7/bin"
I faced the same issue and after have installed it used pip3 install ansible it all works now.
I suggest uninstalling Ansible and re-installing it using pip according to the method suggested in the Ansible docs:
Or if you are looking for the latest development version:
pip install git+https://github.com/ansible/ansible.git#devel
If you are installing on OS X Mavericks, you may encounter some noise from your compiler. A workaround is to do the following:
$ sudo CFLAGS=-Qunused-arguments CPPFLAGS=-Qunused-arguments pip install ansible
Readers that use virtualenv can also install Ansible under virtualenv, though we’d recommend to not worry about it and just install Ansible globally. Do not use easy_install to install ansible directly.
system/instance used: ec2 RH8, as root
# pip3 install ansible (not recommended - should be by a user)
# ansible --version ( not found - wtf?!)
# yum install mlocate
# update
# locate ansible (long output; scroll to where you input command)
# export PATH=$PATH:/usr/local/bin
# ansible --version (success, Yes!)
system/instance used: ec2 RH8, as root
# pip3 install ansible (not recommended - should be by a user)
# ansible --version ( not found - :( )
# yum install mlocate
# updatedb (updatedb creates or updates a database used by locate)
# locate ansible (TL;DR)
# export PATH=$PATH:/usr/local/bin (Add this line to .bashrc)
# source .bashrc (To reflect the changes in the bash)
# ansible --version (success, Yes!)

issues with python virtual environment

I am facing following 2 issues:
python command is not using the virtualenvwrapper python.
After activating my virtual environment if I type python then the code still uses the native python libraries. I can easily install libraries etc with pip to my virtual environment but I cannot run any command using python.
e.g. if I execute $ ./manage.py runserverthen it is fine and I can run a django server
but if I try $ python manage.py runserver
or even just
$ python
then it uses the native python libraries and that should not happen
This is while using iterm or terminal in osx. I have never faced this problem in any linux based os
While using any os (linux based or osx), the workon command doesn't work inside any shell script, while it works normally in a terminal
os: osx
sounds like Python might be using the packages in site-packages, which means you should use the --no-site-packages flag when creating your virtualenv (although it seems like this is the default in the current version of virtualenv).
In order to access the virtualenvwrapper functions from a shell script, you will first need to source it: $ source /usr/local/bin/virtualenvwrapper.sh (the path might be different in your case).
You could try install virtualenv and virtualenvwrapper from pip3.
pip3 install virtualenv virtualenvwrapper
And then find where virtualenvwrapper.sh file is:
find / -name 'virualenvwrapper.sh'
I have mine in /usr/local/bin/virtualenvwrapper.sh. But it seems that you have it in some different directory. So you must change below config to fit your needs.
And then in your .bashrc or .zshrc:
# Python3 virtualenv/venvwrapper
export WORKON_HOME=~/.virtualenvs
VIRTUALENVWRAPPER_PYTHON='/usr/bin/python3' # This needs to be placed before the virtualenvwrapper command
export PROJECT_HOME=$HOME/Projects
source /usr/local/bin/virtualenvwrapper.sh # your path to virtualenvwrapper.sh
Let me know if it works :)

Activated VENV still use system pip and system python? What's wrong?

When I activate a venv, which pip returns /usr/local/bin/pip instead of path/to/my/apps/venv/bin/pop. Why is that?
I am inclined to just rm- rf the pip in /usr/local/bin/pip and install again, but since this is a production server I prefer not to guess too much :-)
My concern is that I have (in usr/local/bin):
easy_install
easy_install-2.6
pip
pip-2.6
virtualenv
virtualenv-2.6
python --version returns 2.6.6 and which python returns /usr/bin/python even though venvis activated?
Running Debian Squeeze
Check your virtualenv for a local directory. If venv/local exists, does it contain pip and easy_install? If it does, you can try working around this problem by editing venv/bin/activate and prepending venv/local/bin to your path just like venv/bin is being prepended.
Something like:
_OLD_VIRTUAL_PATH="$PATH"
PATH="$VIRTUAL_ENV/bin:$PATH"
PATH="$VIRTUAL_ENV/local/bin:$PATH" # my new line
export PATH
I'm having a problem similar to what I've described, and unfortunately I have not run it to ground yet. See also: Why do distribute and pip install to my virtualenv's ./local/bin?
What shell are you using? What specific command did you use to activate the virtualenv?
In my case (also using squeeze) I am using bash and it if I run "source bin/activate" then everything in my path (pip, python, etc) is correct.

Unable to install Python without sudo access

I extracted, configured and used make for the installation package in my server.
However, I could not use make install. I get the error
[~/wepapps/python/Python-2.6.1]# make install
/usr/bin/install -c python /usr/local/bin/python2.6
/usr/bin/install: cannot create regular file `/usr/local/bin/python2.6': Permission denied
make: *** [altbininstall] Error 1
I run the folder with
chmod +x Python-2.6.1
I get still the same error.
How can I run make install without sudo access?
How can I install to a path under my home directory?
mkdir /home/masi/.local
cd Python-2.6.1
make clean
./configure --prefix=/home/masi/.local
make
make install
Then run using:
/home/masi/.local/bin/python
Similarly if you have scripts (eg. CGI) that require your own user version of Python you have to tell them explicitly:
#!/home/masi/.local/bin/python
instead of using the default system Python which “#!/usr/bin/env python” will choose.
You can alter your PATH setting to make just typing “python” from the console run that version, but it won't help for web apps being run under a different user.
If you compile something that links to Python (eg. mod_wsgi) you have to tell it where to find your Python or it will use the system one instead. This is often done something like:
./configure --prefix=/home/masi/.local --with-python=/home/masi/.local
For other setup.py-based extensions like MySQLdb you simply have to run the setup.py script with the correct version of Python:
/home/masi/.local/bin/python setup.py install
As of year 2020, pyenv is the best choice for installing Python without sudo permission, supposing the system has necessary build dependencies.
# Install pyenv
$ curl https://pyenv.run | bash
# Follow the instruction to modify ~/.bashrc
# Install the latest Python from source code
$ pyenv install 3.8.3
# Check installed Python versions
$ pyenv versions
# Switch Python version
$ pyenv global 3.8.3
# Check where Python is actually installed
$ pyenv prefix
/home/admin/.pyenv/versions/3.8.3
# Check the current Python version
$ python -V
Python 3.8.3
Extending bobince answer, there is an issue if you don't have the readline development package installed in your system, and you don't have root access.
When Python is compiled without readline, your arrow keys won't work in the interpreter. However, you can install the readline standalone package as follows: Adding Readline Functionality Without Recompiling Python
On the other hand, if you prefer to compile python using a local installation of readline, here's how.
Before doing as bobince was telling, compile and install readline. These are the steps to do so:
wget ftp://ftp.cwru.edu/pub/bash/readline-6.2.tar.gz
tar -zxvf readline-6.2.tar.gz
cd readline-6.2
./configure --with-prefix=$HOME/.local
make
make install
Then, add this line to your .bash_profile script:
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$HOME/.local/lib
Last, but not least, execute the following command
export LDFLAGS="-L$HOME/.local"
I hope this helps someone!
You can't; not to /usr, anyway. Only superusers can write to those directories. Try installing Python to a path under your home directory instead.

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