Pandas indexing by both boolean `loc` and subsequent `iloc` - python

I want to index a Pandas dataframe using a boolean mask, then set a value in a subset of the filtered dataframe based on an integer index, and have this value reflected in the dataframe. That is, I would be happy if this worked on a view of the dataframe.
Example:
In [293]:
df = pd.DataFrame({'a': [0, 1, 2, 3, 4, 5, 6, 7],
'b': [5, 5, 2, 2, 5, 5, 2, 2],
'c': [0, 0, 0, 0, 0, 0, 0, 0]})
mask = (df['a'] < 7) & (df['b'] == 2)
df.loc[mask, 'c']
Out[293]:
2 0
3 0
6 0
Name: c, dtype: int64
Now I would like to set the values of the first two elements returned in the filtered dataframe. Chaining an iloc onto the loc call above works to index:
In [294]:
df.loc[mask, 'c'].iloc[0: 2]
Out[294]:
2 0
3 0
Name: c, dtype: int64
But not to assign:
In [295]:
df.loc[mask, 'c'].iloc[0: 2] = 1
print(df)
a b c
0 0 5 0
1 1 5 0
2 2 2 0
3 3 2 0
4 4 5 0
5 5 5 0
6 6 2 0
7 7 2 0
Making the assign value the same length as the slice (i.e. = [1, 1]) also doesn't work. Is there a way to assign these values?

This does work but is a little ugly, basically we use the index generated from the mask and make an additional call to loc:
In [57]:
df.loc[df.loc[mask,'c'].iloc[0:2].index, 'c'] = 1
df
Out[57]:
a b c
0 0 5 0
1 1 5 0
2 2 2 1
3 3 2 1
4 4 5 0
5 5 5 0
6 6 2 0
7 7 2 0
So breaking the above down:
In [60]:
# take the index from the mask and iloc
df.loc[mask, 'c'].iloc[0: 2]
Out[60]:
2 0
3 0
Name: c, dtype: int64
In [61]:
# call loc using this index, we can now use this to select column 'c' and set the value
df.loc[df.loc[mask,'c'].iloc[0:2].index]
Out[61]:
a b c
2 2 2 0
3 3 2 0

How about.
ix = df.index[mask][:2]
df.loc[ix, 'c'] = 1
Same idea as EdChum but more elegant as suggested in the comment.
EDIT: Have to be a little bit careful with this one as it may give unwanted results with a non-unique index, since there could be multiple rows indexed by either of the label in ix above. If the index is non-unique and you only want the first 2 (or n) rows that satisfy the boolean key, it would be safer to use .iloc with integer indexing with something like
ix = np.where(mask)[0][:2]
df.iloc[ix, 'c'] = 1

I don't know if this is any more elegant, but it's a little different:
mask = mask & (mask.cumsum() < 3)
df.loc[mask, 'c'] = 1
a b c
0 0 5 0
1 1 5 0
2 2 2 1
3 3 2 1
4 4 5 0
5 5 5 0
6 6 2 0
7 7 2 0

Related

Replace specific values in a data frame with column mean

I have a dataframe and I want to replace the value 7 with the round number of mean of its columns with out other 7 in that columns. Here is a simple example:
import pandas as pd
df = pd.DataFrame()
df['a'] = [1, 2, 3]
df['b'] =[3, 0, -1]
df['c'] = [4, 7, 6]
df['d'] = [7, 7, 6]
a b c d
0 1 3 4 7
1 2 0 7 7
2 3 -1 6 6
And here is the output I want:
a b c d
0 1 3 4 2
1 2 0 3 2
2 3 -1 6 6
For example, in row 1, the mean of column c is equal to 3.33 and then its round is 3, and in column column d is equal to 2 (since we do not consider the other 7 in that column).
Can you please help me with that?
here is one way to do it
# replace 7 with np.nan
df.replace(7,np.nan, inplace=True)
# fill NaN values with the mean of the column
(df.fillna(df.apply(lambda x: x.replace(np.nan, 0)
.mean(skipna=False) ))
.round(0)
.astype(int))
a b c d
0 1 3 4 2
1 2 0 3 2
2 3 -1 6 6
temp = df.replace(to_replace=7, value=0, inplace=False).copy()
df.replace(to_replace=7, value=temp.mean().astype(int), inplace=True)

Pad selection range in Pandas Dataframe?

If I slice a dataframe with something like
>>> df = pd.DataFrame(data=[[x] for x in [1,2,3,5,1,3,2,1,1,4,5,6]], columns=['A'])
>>> df.loc[df['A'] == 1]
# or
>>> df[df['A'] == 1]
A
0 1
4 1
7 1
8 1
how could I pad my selections by a buffer of 1 and get the each of the indices 0, 1, 3, 4, 5, 6, 7, 8, 9? I want to select all rows for which the value in column 'A' is 1, but also a row before or after any such row.
edit I'm hoping to figure out a solution that works for arbitrary pad sizes, rather than just for a pad size of 1.
edit 2 here's another example illustrating what I'm going for
df = pd.DataFrame(data=[[x] for x in [1,2,3,5,3,2,1,1,4,5,6,0,0,3,1,2,4,5]], columns=['A'])
and we're looking for pad == 2. In this case I'd be trying to fetch rows 0, 1, 2, 4, 5, 6, 7, 8, 9, 12, 13, 14, 15, 16.
you can use shift with bitwise or |
c = df['A'] == 1
df[c|c.shift()|c.shift(-1)]
A
0 1
1 2
3 5
4 1
5 3
6 2
7 1
8 1
9 4
For arbitrary pad sizes, you may try where, interpolate, and notna to create the mask
n = 2
c = df.where(df['A'] == 1)
m = c.interpolate(limit=n, limit_direction='both').notna()
df[m]
Out[61]:
A
0 1
1 2
2 3
4 3
5 2
6 1
7 1
8 4
9 5
12 0
13 3
14 1
15 2
16 4
Here is an approach that allows for multiple pad levels. Use ffill and bfill on the boolean mask (df['A'] == 1), after converting the False values to np.nan:
import numpy as np
pad = 2
df[(df['A'] == 1).replace(False, np.nan).ffill(limit=pad).bfill(limit=pad).replace(np.nan,False).astype(bool)]
Here it is in action:
def padsearch(df, column, value, pad):
return df[(df[column] == value).replace(False, np.nan).ffill(limit=pad).bfill(limit=pad).replace(np.nan,False).astype(bool)]
# your first example
df = pd.DataFrame(data=[[x] for x in [1,2,3,5,1,3,2,1,1,4,5,6]], columns=['A'])
print(padsearch(df=df, column='A', value=1, pad=1))
# your other example
df = pd.DataFrame(data=[[x] for x in [1,2,3,5,3,2,1,1,4,5,6,0,0,3,1,2,4,5]], columns=['A'])
print(padsearch(df=df, column='A', value=1, pad=2))
Result:
A
0 1
1 2
3 5
4 1
5 3
6 2
7 1
8 1
9 4
A
0 1
1 2
2 3
4 3
5 2
6 1
7 1
8 4
9 5
12 0
13 3
14 1
15 2
16 4
Granted the command is far less nice, and its a little clunky to be converting the False to and from null. But it's still using all Pandas builtins, so it is fairly quick still.
I found another solution but not nearly as slick as some of the ones already posted.
# setup
df = ...
pad = 2
# determine set of indicies
indices = set(
[
x for x in filter(
lambda x: x>=0,
[
x+y
for x in df[df['A'] == 1].index
for y in range(-pad, pad+1)
]
)
]
)
# fetch rows
df.iloc[[*indices]]

How to apply a condition to a large number of columns in a pandas dataframe

I want to eliminate all rows that are equal to a certain values (or in a certain range) within a dataframe with a large number of columns. For example, if I had the following dataframe:
a b
0 1 0
1 2 1
2 3 2
3 0 3
and wanted to remove all rows containing 0, I could use:
a_df[(a_df['a'] != 0) & (a_df['b'] !=0)]
but this becomes a pain when you're dealing with a large number of columns. It could be done as:
for i in a_df.columns.values:
a_df = a_df[a_df[i] != 0]
but this seems inefficient. Is there a better way to do this?
Just do it for the whole df and call dropna:
In [45]:
df[df != 0].dropna()
Out[45]:
a b
1 2 1
2 3 2
The condition df != 0 produces a boolean mask:
In [47]:
df != 0
Out[47]:
a b
0 True False
1 True True
2 True True
3 False True
When this is combined with the df it produces NaN values where the condition is not met:
In [48]:
df[df != 0]
Out[48]:
a b
0 1 NaN
1 2 1
2 3 2
3 NaN 3
Calling dropna drops any row with a NaN value
Here's a variant of EdChum's approach. You could do df != 0 and then use all to make your selector:
>>> (df != 0).all(axis=1)
0 False
1 True
2 True
3 False
dtype: bool
and then use this to select:
>>> df.loc[(df != 0).all(axis=1)]
a b
1 2 1
2 3 2
The advantage of this is that it keeps NaNs if you want, e.g.
>>> df
a b
0 1 0
1 2 NaN
2 3 2
3 0 3
>>> df.loc[(df != 0).all(axis=1)]
a b
1 2 NaN
2 3 2
>>> df[(df != 0)].dropna()
a b
2 3 2
as you've mentioned in your question you may need to drop rows that have a value in a certain range you can do this by the following
suppose the range is 0 , 10 , 20
frame = DataFrame({'b': [4, 7, -3, 2], 'a': [0, 1, 0, 1]})
mask = frame.applymap(lambda x : False if x in [0 , 10 , 20] else True )
frame[mask.all(axis = 1)]

Pandas index column by boolean

I want to keep columns that have 'n' or more values.
For example:
> df = pd.DataFrame({'a': [1,2,3], 'b': [1,None,4]})
a b
0 1 1
1 2 NaN
2 3 4
3 rows × 2 columns
> df[df.count()==3]
IndexingError: Unalignable boolean Series key provided
> df[:,df.count()==3]
TypeError: unhashable type: 'slice'
> df[[k for (k,v) in (df.count()==3).items() if v]]
a
0 1
1 2
2 3
Is that the best way to do this? It seems ridiculous.
You can use conditional list comprehension to generate the columns that exceed your threshold (e.g. 3). Then just select those columns from the data frame:
# Create sample DataFrame
df = pd.DataFrame({'a': [1, 2, 3, 4, 5],
'b': [1, None, 4, None, 2],
'c': [5, 4, 3, 2, None]})
>>> df_new = df[[col for col in df if df[col].count() > 3]]
Out[82]:
a c
0 1 5
1 2 4
2 3 3
3 4 2
4 5 NaN
Use count to produce a boolean index and use this as a mask for the columns:
In [10]:
df[df.columns[df.count() > 2]]
Out[10]:
a
0 1
1 2
2 3
if you want to keep columns that have 'n' or more values. for my example i am considering n value as 4
df = pd.DataFrame({'a': [1,2,3,4,6], 'b': [1,None,4,5,7],'c': [1,2,3,5,8]})
print df
a b c
0 1 1 1
1 2 NaN 2
2 3 4 3
3 4 5 5
4 6 7 8
print df[[i for i in xrange(0,len(df.columns)) if len(df.iloc[:,i]) - df.isnull().sum()[i] >4]]
a c
0 1 1
1 2 2
2 3 3
3 4 5
4 6 8

How to repeat a Pandas DataFrame?

This is my DataFrame that should be repeated for 5 times:
>>> x = pd.DataFrame({'a':1,'b':2}, index = range(1))
>>> x
a b
0 1 2
I want to have the result like this:
>>> x.append(x).append(x).append(x)
a b
0 1 2
0 1 2
0 1 2
0 1 2
But there must be a smarter way than appending 4 times. Actually the DataFrame I’m working on should be repeated 50 times.
I haven't found anything practical, including those like np.repeat ---- it just doesn't work on a DataFrame.
Could anyone help?
You can use the concat function:
In [13]: pd.concat([x]*5)
Out[13]:
a b
0 1 2
0 1 2
0 1 2
0 1 2
0 1 2
If you only want to repeat the values and not the index, you can do:
In [14]: pd.concat([x]*5, ignore_index=True)
Out[14]:
a b
0 1 2
1 1 2
2 1 2
3 1 2
4 1 2
I think it's cleaner/faster to use iloc nowadays:
In [11]: np.full(3, 0)
Out[11]: array([0, 0, 0])
In [12]: x.iloc[np.full(3, 0)]
Out[12]:
a b
0 1 2
0 1 2
0 1 2
More generally, you can use tile or repeat with arange:
In [21]: df = pd.DataFrame([[1, 2], [3, 4]], columns=["A", "B"])
In [22]: df
Out[22]:
A B
0 1 2
1 3 4
In [23]: np.tile(np.arange(len(df)), 3)
Out[23]: array([0, 1, 0, 1, 0, 1])
In [24]: np.repeat(np.arange(len(df)), 3)
Out[24]: array([0, 0, 0, 1, 1, 1])
In [25]: df.iloc[np.tile(np.arange(len(df)), 3)]
Out[25]:
A B
0 1 2
1 3 4
0 1 2
1 3 4
0 1 2
1 3 4
In [26]: df.iloc[np.repeat(np.arange(len(df)), 3)]
Out[26]:
A B
0 1 2
0 1 2
0 1 2
1 3 4
1 3 4
1 3 4
Note: This will work with non-integer indexed DataFrames (and Series).
Try using numpy.repeat:
>>> import numpy as np
>>> df = pd.DataFrame(np.repeat(x.to_numpy(), 5, axis=0), columns=x.columns)
>>> df
a b
0 1 2
1 1 2
2 1 2
3 1 2
4 1 2
I would generally not repeat and/or append, unless your problem really makes it necessary - it is highly inefficiently and typically comes from not understanding the proper way to attack a problem.
I don't know your exact use case, but if you have your values stored as
values = array(1, 2)
df2 = pd.DataFrame(index=arange(0,50), columns=['a', 'b'])
df2[['a', 'b']] = values
will do the job. Perhaps you want to better explain what you're trying to achieve?
Append should work too:
In [589]: x = pd.DataFrame({'a':1,'b':2},index = range(1))
In [590]: x
Out[590]:
a b
0 1 2
In [591]: x.append([x]*5, ignore_index=True) #Ignores the index as per your need
Out[591]:
a b
0 1 2
1 1 2
2 1 2
3 1 2
4 1 2
5 1 2
In [592]: x.append([x]*5)
Out[592]:
a b
0 1 2
0 1 2
0 1 2
0 1 2
0 1 2
0 1 2
Without numpy, we could also use Index.repeat and loc (or reindex):
x.loc[x.index.repeat(5)].reset_index(drop=True)
or
x.reindex(x.index.repeat(5)).reset_index(drop=True)
Output:
a b
0 1 2
1 1 2
2 1 2
3 1 2
4 1 2
Apply by row-lambda is a universal approach in my opinion:
df = pd.DataFrame([[1, 2], [3, 4]], columns=["A", "B"])
df.apply(lambda row: row.repeat(2), axis=0) #.reset_index()
Out[1]:
A B
0 1 2
0 1 2
1 3 4
1 3 4

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