I tried to document a larger Matlab project using Sphinx and the sphinxcontrib-matlabdomain package. It works fine for a single folder that stores all .m files. However my project contains multiple classes stored in separate folders such as:
project
|-- matfiles
| |-- #class1
| | |-- class1.m
| | |-- method1.m
| | |-- method2.m
| | +-- method1.m
| |-- #class2
| | |-- class2.m
| | |-- methodA.m
| | |-- methodB.m
| | +-- methodC.m
| +-- function
| |-- fun1.m
| |-- fun2.m
| +-- fun3.m
+-- doc
|-- conf.py
+-- index.rst
I adde the following lines to conf.py:
matlab_src_dir = os.path.abspath('..')
extensions = [
'sphinx.ext.autodoc',
'sphinxcontrib.matlab',
]
primary_domain = 'mat'
And I added the following lines to index.rst:
.. module:: matfiles
.. automethod:: class1.method1
I got the following error:
Exception occurred:
File "/Library/Python/2.7/site-packages/sphinxcontrib/mat_documenters.py", line 788, in import_object
if self.object.attrs.get('Static'):
AttributeError: 'NoneType' object has no attribute 'attrs'
The full traceback has been saved in /var/folders/70/g0lr37wn60gbbymnsks_t5vm0000gn/T/sphinx-err-uD8qpe.log, if you want to report the issue to the developers.
Please also report this if it was a user error, so that a better error message can be provided next time.
A bug report can be filed in the tracker at <https://github.com/sphinx-doc/sphinx/issues>. Thanks!
| reading sources... [100%] index
So my question is, is there a way to document multi class Matlab projects where class methods are saved in a folder with name #class?
I believe this issue has been resolved in the latest version, sphinxcontrib-matlabdomain-0.2.7, which autodocuments class methods with attributes defined in separate files of a #classfolders. Let me know if it's still an issue.
Related
I need to delete some folders created for testing.
In the main test folder, I created the a file test_teardown.py with the following content.
import shutil
import pytest
#pytest.fixture(scope="session")
def teardown():
yield
shutil.rmtree('tmp')
Yet, the tmp folder is not deleted after the testing session is completed. Am I using the fixture incorrectly?
File structure
+-- Project folder
| +-- tests
| | +-- __init__.py
| | +-- test_teardown.py
| | +-- Unit
| | | +-- __init__.py
| | | +-- test_moretests.py
Thanks to #MrBean Bremen
Adding autouse=True to the wrapper ensures that it's automatically involved.
Do make sure that your test_teardown.py is included in the used test folder.
Wrapper:
#pytest.fixture(scope='session', autouse=True)
def teardown():
yield
shutil.rmtree('tmp')
I have a project with the following hierarchy:
create_fresh_databases
|
|--src
| |
| -- configurations
| |
| |-- config.py
| |-- config.xml
| -- __init__.py
|
---- create_fresh_databases.py
the config.py file contains Configurations class
the file create_fresh_databases.py looks:
from create_fresh_databases.src.configurations.config import Configurations
def main():
con = Configurations("conf.xml")
if __name__ == "__main__":
main()
but I'm getting error:
ModuleNotFoundError: No module named 'create_fresh_databases.src'; create_fresh_databases is not a package
My IDE is pycharm, and I have python 3.6
How can I fix it ?
I think you should organise the package structure like this:
Package:
|
|--Configurations:
| |
| |--Config.py
| |
| |--Config1.xml
|
|--__init__.py
Then you can import it as Package.configurations.config
I have a python project with the following directory structure
|-- package_name/
| |-- __init__.py
| |-- lambda_function.py
| |-- ...
|
|-- database/
| |-- data.json
And I'm using data.json file on my package to initialize some objects.
I would like to split my current data file on multiple json files because there are too much information group on one single file
Something like :
|-- database/
| |-- A/
| | |-- a.json
| | |-- b.json
| |-- B/
| | |-- c.json
| | |-- C/
| | |-- a.json
| | |-- b.json
I don't want to make a real database because data will not move, there are just here to initialize my objects.
Question :
How can I do to have multiple json files to clarify the code, but a simple way to use them as if it was a single one.
I would like to know the best practices on how manage that kind of data on a python projects.
I have a file call entryPoint.py :
from .commonLib.deviceLib import *
And I have a file called deviceLib.py :
import math
import sys
import logging
import requests
import this
class DeviceLib(object):
def __init__(self, connectionDb):
self.__db = connectionDb
The tree is like this :
/test
entryPoint.py
/commonLib
__init__.py
deviceLib.py
When I execute python entryPoint.py I get the error : Attempted relative import in non-package. Please help me.
use sys.path.append to append the directory where your python file (module is). E.g if your entryPoint.py is inside address directory
import sys
sys.path.append('/path/to/your/module/address/')
import entryPoint
There should be __init__.py in the folder both /test and /commonLib reside.
then just do
from commonLib import deviceLib
For example
sound
|-- effects
| |-- echo.py
| |-- __init__.py
| |-- reverse.py
| `-- surround.py
|-- filters
| |-- equalizer.py
| |-- __init__.py
| |-- karaoke.py
| `-- vocoder.py
|-- formats
| |-- aiffread.py
| |-- aiffwrite.py
| |-- auread.py
| |-- auwrite.py
| |-- __init__.py
| |-- wavread.py
| `-- wavwrite.py
`-- __init__.py
lets assume you are right now opened wavread.py in format subdirecory, you can import karaoke.py from filters by just
from filters import karaoke
More information Here,
https://www.python-course.eu/python3_packages.php
To import a file from another directory you can use this code :
import sys
sys.path.insert(0, 'folder destination')
import file
As you can see here we included the path so python will look for the file in that path as well.
I have the directory structure like this
-- jenkins
|-- jobs
| |-- dir1
| | |-- build_dir--
| | `-- Autoyes
| |-- dir2
| | |-- build_dir--
| | `-- Manyes
| |-- dir3
| | |-- ArtFict
| | `-- build_dir--
| `-- hi
|-- tesst
`-- tets
I need to take a tar using tarfile module by excluding the "build_dir" under all dir1,dir2,dir3 and more directories.
I can use a very simple tar statement into subprocess to achieve this
tar --exclude="*/*/buid_dir" -czvf test.tgz jenkins
But I'm looking for a pythonic way to achieve this, so far what I have done is not excluding the "build_dir" directory.
import tarfile
import os,sys
import subprocess
def ProcesS (input):
Asub = subprocess.Popen (input,shell=True,stdout=subprocess.PIPE,stderr=subprocess.PIPE)
output,error = Asub.communicate()
return output,error
A = ['jenkins', 'jenkins/jobs', 'jenkins/jobs/dir1', 'jenkins/jobs/dir1/build_dir', 'jenkins/jobs/dir2', 'jenkins/jobs/dir2/build_dir', 'jenkins/jobs/dir3', 'jenkins/jobs/dir3/build_dir']
Tar = tarfile.open('Backme.tgz','w:gz')
#Tar.add(A,exclude='*/*/build_dir') #This throws the error
Tar.add(A) # creates a tar file without excluding the build_dir
Tar.close()
It would be much helpful if someone finds the answer for this.
from the documentation
TarFile.add(name, arcname=None, recursive=True, exclude=None, filter=None)
it looks like you would just add it to excludes (you may have to put the full path ...)
it looks like you do
tf = tarfile.open("sometar.tar","w")
def excludes_fn(name):
return "build" in name
tf.add("/base/folder",exclude=excludes_fn)