Im trying to read a dataset and collect meta features from it.
I get the following error after executing the python file.
Traceback (most recent call last):
File "runmeta.py", line 79, in <module>
np.savetxt('datasets/'+str(i)+'/metafeatures',meta[i],delimiter=',')
File "/usr/lib/python2.7/dist-packages/numpy/lib/npyio.py", line 940, in savetxt
fh = open(fname, 'w')
IOError: [Errno 2] No such file or directory: 'datasets/2/metafeatures'
the error you're getting is simply telling you it didn't find the file. i would suggest looking into absolute and relative file paths.
advice in error handling:
the error is triggered on this line
fh = open(fname, 'w')
so as you debug your program, look at the line python shows you. maybe change the variable fname. that is where i would start.
currently
fname = 'datasets/2/metafeatures'
Related
I just tried to read in a big json file (the Wikipedia json dump) in Python line by line and got the Error:
Traceback (most recent call last):
File "C:/.../test_json_wiki_file.py", line 19, in <module>
test_fct()
File "C:/.../test_json_wiki_file.py", line 12, in test_fct
for line in f:
OSError: [Errno 9] Bad file descriptor
Here is my code:
import json
def test_fct():
data = []
i = 0
with open('E:/.../20200713.json/20200713.json') as f:
for line in f:
data.append(json.loads(line))
i = i + 1
if i > 1:
input_file.close()
return data
test_data = test_fct()
The file size is around 700GB and the description (https://www.wikidata.org/wiki/Wikidata:Database_download) of the file states that it can be read line by line. I don't know if this is important but the E:/ hard drive is an external one.
Thank you for your help in advance :)
I don't have any firsthand knowledge on opening large files in python, but did you mean to have the path as 20200713.json/20200713.json. Is the first one actually a directory that has a .json extension? I'd also suggest trying to first load a smaller sample of the file (opening might be hard, so maybe just use the more command in terminal?).
I am executing the following line:
id2word = gensim.corpora.Dictionary.load_from_text('wiki_en_wordids.txt')
This code is available at "https://radimrehurek.com/gensim/wiki.html". I downloaded the wikipedia corpus and generated the required files and wiki_en_wordids.txt is one of those files. This file is available in the following location:
~/gensim/results/wiki_en
So when i execute the code mentioned above I get the following error:
Traceback (most recent call last):
File "~\Python\Python36-32\temp.py", line 5, in <module>
id2word = gensim.corpora.Dictionary.load_from_text('wiki_en_wordids.txt')
File "~\Python\Python36-32\lib\site-packages\gensim\corpora\dictionary.py", line 344, in load_from_text
with utils.smart_open(fname) as f:
File "~\Python\Python36-32\lib\site-packages\smart_open\smart_open_lib.py", line 129, in smart_open
return file_smart_open(parsed_uri.uri_path, mode)
File "~\Python\Python36-32\lib\site-packages\smart_open\smart_open_lib.py", line 613, in file_smart_open
return open(fname, mode)
FileNotFoundError: [Errno 2] No such file or directory: 'wiki_en_wordids.txt'
Even though the file is available in the required location I get that error. Should I place the file in any other location? How do I determine what the right location is?
The code requires an absolute path here. Relative path should be used when entire operation is carried out in the same directory location, but in this case, the file name is passed as argument to some other function which is located at different location.
One way to handle this situation is using abspath -
import os
id2word = gensim.corpora.Dictionary.load_from_text(os.path.abspath('wiki_en_wordids.txt'))
I'm trying to access a .txt file in Python and I can't figure out how to open the file. I ended up copying the contents into a list directly but I would like to know how to open a file for the future.
If I run this nothing prints. I think it's because Python is looking in the wrong folder/directory but I don't know how to change file paths.
sourcefile = open("CompletedDirectory.txt").read()
print(sourcefile)
The file CompletedDirectory.txt is probably empty.
If Python could not find the file, you would get a FileNotFoundError exception:
>>> sourcefile = open("CompletedDirectory.txt").read()
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
FileNotFoundError: [Errno 2] No such file or directory: 'CompletedDirectory.txt'
Note that using read() in this way is not recommended. You're not closing the file properly. Use a context manager:
with open("CompletedDirectory.txt") as infile:
sourcefile = infile.read()
This will automatically close infile on leaving the with block.
You can get the current working directory:
import os
os.getcwd()
Then just concat it with the file container directory
os.path.join("targetDir", "fileName")
I am using Pandas on Mac, to read and write a CSV file, and the weird thing is when using full path, it has error and when using just a file name, it works. I post my code which works and which not works in my comments below, and also detailed error messages. Anyone have any good ideas?
sourceDf = pd.read_csv(path_to_csv)
sourceDf['nameFull'] = sourceDf['nameFirst'] + ' ' + sourceDf['nameLast']
sourceDf.to_csv('newMaster.csv') # working
sourceDf.to_csv('~/Downloads/newMaster.csv') # not working
Traceback (most recent call last):
File "/Users/foo/PycharmProjects/DataWranglingTest/CSVTest1.py", line 36, in <module>
add_full_name(path_to_csv, path_to_new_csv)
File "/Users/foo/PycharmProjects/DataWranglingTest/CSVTest1.py", line 28, in add_full_name
sourceDf.to_csv('~/Downloads/newMaster.csv')
File "/usr/local/Cellar/python/2.7.8/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pandas/core/frame.py", line 1189, in to_csv
formatter.save()
File "/usr/local/Cellar/python/2.7.8/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pandas/core/format.py", line 1442, in save
encoding=self.encoding)
File "/usr/local/Cellar/python/2.7.8/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pandas/core/common.py", line 2831, in _get_handle
f = open(path, mode)
IOError: [Errno 2] No such file or directory: '~/Downloads/newMaster.csv'
Tried to use prefix r, but not working,
path_to_csv = r'~/Downloads/Master.csv'
path_to_new_csv = r'~/Downloads/Master_new.csv'
File "/usr/local/Cellar/python/2.7.8/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pandas/core/frame.py", line 1189, in to_csv
formatter.save()
File "/usr/local/Cellar/python/2.7.8/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pandas/core/format.py", line 1442, in save
encoding=self.encoding)
File "/usr/local/Cellar/python/2.7.8/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pandas/core/common.py", line 2831, in _get_handle
f = open(path, mode)
IOError: [Errno 2] No such file or directory: '~/Downloads/Master_new.csv'
thanks in advance,
Lin
Try using os.path.join().
import os
(...)
output_filename = 'newMaster.csv'
output_path = os.path.join('Downloads', output_filename)
(...)
sourceDf.to_csv(output_path)
Use the same methodology to point pandas.read_csv() in the right direction.
You didn't specify python version.
On 3.4 you can use pathlib, otherwise use os.path.join() or quoting:
sourceDf.to_csv(r'~/Downloads/newMaster.csv')
Notice the r.
The problem is that /n is newline, which is not allowed in a path.
Traceback (most recent call last):
File "TTRC_main.py", line 309, in <module>
updater.start()
File "TTRC_main.py", line 36, in start
newFileData = bz2.BZ2File("C:/Program Files (x86)/Toontown Rewritten/temp/phase_7.mf.bz2"," rb").read()
IOError: invalid data stream
The code to retrieve file I'm getting that's giving me this error is:
newFileComp = urllib.URLopener()
newFileComp.retrieve("http://kcmo-1.download.toontownrewritten.com/content/phase_7.mf.bz2", "C:/Program Files (x86)/Toontown Rewritten/temp/phase_7.mf.bz2")
What do I do to fix this error? Its not really descriptive. (to me)
Could the issue be occuring because of the extra spacein the file mode? -
newFileData = bz2.BZ2File("C:/Program Files (x86)/Toontown Rewritten/temp/phase_7.mf.bz2"," rb").read()
Try this -
newFileData = bz2.BZ2File("C:/Program Files (x86)/Toontown Rewritten/temp/phase_7.mf.bz2","rb").read()
For me the issue was that the files were not in .bz2 format.
Make sure file is bz2 format.
Make sure the read and write actions are the same "r","w" or "rb","wb"
Like Anand said, no space in "rb".