I'm trying to do a malware analysis by using cuckoo sandbox and a VM Machine (WinXP) running on VirtualBox. But however, I can't get cuckoo to run because I haven't installed cybox and maec correctly.
Thus leads me to this problem where I can't get myself to install lxml.
It just won't let me install either by using pip or manual installation with the setup.py file.
Here is what I got:
Building lxml version 3.4.1.
Building without Cython.
Using build configuration of libxslt 1.1.26
/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'bugtrack_url'
warnings.warn(msg)
running install
running bdist_egg
running egg_info
writing requirements to src/lxml.egg-info/requires.txt
writing src/lxml.egg-info/PKG-INFO
writing top-level names to src/lxml.egg-info/top_level.txt
writing dependency_links to src/lxml.egg-info/dependency_links.txt
reading manifest file 'src/lxml.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'src/lxml.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.8-intel/egg
running install_lib
running build_py
copying src/lxml/includes/lxml-version.h -> build/lib.macosx-10.8-intel-2.7/lxml/includes
running build_ext
building 'lxml.etree' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -mno-fused-madd -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch i386 -arch x86_64 -pipe -I/usr/include/libxml2 -I/Users/ajprameswari/Downloads/lxml-3.4.1/src/lxml/includes -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c src/lxml/lxml.etree.c -o build/temp.macosx-10.8-intel-2.7/src/lxml/lxml.etree.o -w -flat_namespace
clang: error: unknown argument: '-mno-fused-madd' [-Wunused-command-line-argument-hard-error-in-future]
clang: note: this will be a hard error (cannot be downgraded to a warning) in the future
error: command 'clang' failed with exit status 1
I tried both lxml-3.4.0 and lxml-3.4.1 version but they gave the same result.
I'm using Python 2.7 and OS X 10.8.5. Is there anything that could be pointed to help me solve this issue? I'm a newbie in using OS X, I used to work on my Ubuntu, but due to lack spec of my Ubuntu machine I need to work here.
The Apple LLVM compiler in Xcode 5.1 treats unrecognized command-line options as errors. This issue has been seen when building Python native extensions, where some invalid compiler options are specified.
It seems that the newer version of the llvm compiler shipping is a little more restrictive when it comes to warnings.
Fix:
There is a temporary solution to tell the compiler not to raise this error by setting the following environment variables :
sudo -E export CFLAGS=-Qunused-arguments
sudo -E export CPPFLAGS=-Qunused-arguments
Related
I am trying to import MySQldb in python and call the python script from a php script in XAMPP. Here is what I did:
Environment:
1. Mac OSX 10.6.8
2. Python version 2.6 (default)[64bit]
Done so far:
1. Installed XAMPP
2. MySQL config path: /Applications/XAMPP/xamppfiles/bin/mysql_config
3. Downloaded MySQL-python-1.2.4b4
4. edited the site.cfg with config path for MySQL
5. Ran following commands
sudo python setup.py clean
python setup.py build
Got the following error:
running build
running build_py
copying MySQLdb/release.py -> build/lib.macosx-10.6-universal-2.6/MySQLdb
running build_ext
building '_mysql' extension
gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -Os -Wall - Wstrict-prototypes -DENABLE_DTRACE -pipe -Dversion_info=(1,2,4,'beta',4) - D__version__=1.2.4b4 -I/Applications/XAMPP/xamppfiles/include/mysql - I/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c _mysql.c -o build/temp.macosx-10.6-universal-2.6/_mysql.o -mmacosx-version-min=10.4 -arch i386 -arch ppc -D_P1003_1B_VISIBLE -DSIGNAL_WITH_VIO_CLOSE -DSIGNALS_DONT_BREAK_READ - DIGNORE_SIGHUP_SIGQUIT -DDONT_DECLARE_CXA_PURE_VIRTUAL
In file included from _mysql.c:44:
/Applications/XAMPP/xamppfiles/include/mysql/my_config.h:1053:1: warning: "HAVE_WCSCOLL" redefined
In file included from /System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/Python.h:8,
from _mysql.c:29:
/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/pyconfig.h:803:1 : warning: this is the location of the previous definition
/usr/libexec/gcc/powerpc-apple-darwin10/4.2.1/as: assembler (/usr/bin/../libexec/gcc/darwin/ppc/as or /usr/bin/../local/libexec/gcc/darwin/ppc/as) for architecture ppc not installed
Installed assemblers are:
/usr/bin/../libexec/gcc/darwin/x86_64/as for architecture x86_64
/usr/bin/../libexec/gcc/darwin/i386/as for architecture i386
In file included from _mysql.c:44:
/Applications/XAMPP/xamppfiles/include/mysql/my_config.h:1053:1: warning: "HAVE_WCSCOLL" redefined
In file included from /System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/Python.h:8,
from _mysql.c:29: /System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/pyconfig.h:803:1: warning: this is the location of the previous definition
_mysql.c:3131: fatal error: error writing to -: Broken pipe
compilation terminated.
lipo: can't open input file: /var/tmp//ccQsr7Lk.out (No such file or directory)
error: command 'gcc-4.2' failed with exit status 1
yum install mysql-devel
pip install MySQL-python
I have XCode installed and also FreeTDS. I tried to connect to my SQL Server and it works perfect.
Now I have to develop an aplication on python that works with this SQL Server and I´m trying to install pymsql, but I got this error when I launche sudo python setup.py command:
==> sudo python setup.py install
running install
running bdist_egg
running egg_info
writing pymssql.egg-info/PKG-INFO
writing top-level names to pymssql.egg-info/top_level.txt
writing dependency_links to pymssql.egg-info/dependency_links.txt
reading manifest file 'pymssql.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pymssql.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.7-intel/egg
running install_lib
running build_ext
skipping '_mssql.c' Cython extension (up-to-date)
building '_mssql' extension
llvm-gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -mno-fused-madd -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch i386 -arch x86_64 -pipe -I/sw/include -Ifreetds/nix_64/include -I/opt/local/include -I/opt/local/include/freetds -I/opt/local/freetds/include -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c _mssql.c -o build/temp.macosx-10.7-intel-2.7/_mssql.o -DMSDBLIB
_mssql.c: In function ‘__pyx_f_6_mssql_15MSSQLConnection_convert_python_value’:
_mssql.c:7322: warning: implicit conversion shortens 64-bit value into a 32-bit value
_mssql.c: In function ‘__pyx_f_6_mssql_15MSSQLConnection_get_result’:
_mssql.c:9554: warning: implicit conversion shortens 64-bit value into a 32-bit value
_mssql.c:9566: warning: implicit conversion shortens 64-bit value into a 32-bit value
_mssql.c: In function ‘__pyx_pf_6_mssql_20MSSQLStoredProcedure_2bind’:
_mssql.c:11146: warning: implicit conversion shortens 64-bit value into a 32-bit value
llvm-gcc-4.2 -Wl,-F. -bundle -undefined dynamic_lookup -Wl,-F. -arch i386 -arch x86_64 build/temp.macosx-10.7-intel-2.7/_mssql.o -L/sw/lib -Lfreetds/nix_64/lib -L/opt/local/lib -L/opt/local/lib/freetds -L/opt/local/freetds/lib -lsybdb -lrt -o build/lib.macosx-10.7-intel-2.7/_mssql.so
ld: warning: directory not found for option '-L/sw/lib'
ld: warning: directory not found for option '-L/opt/local/lib'
ld: warning: directory not found for option '-L/opt/local/lib/freetds'
ld: warning: directory not found for option '-L/opt/local/freetds/lib'
ld: library not found for -lrt
collect2: ld returned 1 exit status
ld: warning: directory not found for option '-L/sw/lib'
ld: warning: directory not found for option '-L/opt/local/lib'
ld: warning: directory not found for option '-L/opt/local/lib/freetds'
ld: warning: directory not found for option '-L/opt/local/freetds/lib'
ld: library not found for -lrt
collect2: ld returned 1 exit status
lipo: can't open input file: /var/tmp//cc6eQsIN.out (No such file or directory)
error: command 'llvm-gcc-4.2' failed with exit status 1
Any help or clue?
Unfortunately, pymssql's setup.py (as of version pymssql-2.0.0b1-dev-20111019) needs a bit of help to work properly on OSX Lion. The current setup.py tries to compile/link against some pre-built Linux FreeTDS libraries, and also tries to link against librt, which doesn't exist on OSX. Additionally, it only explicitly looks for FreeTDS libraries from Fink or MacPorts, so if you've installed Homebrew (if you use if) or FreeTDS itself in a non-standard location, it may not be located by compiler/linker.
I created a repaired version of setup.py here. It worked well enough for me with the Homebrew build of FreeTDS using the standard locations (/usr/local/{lib, include}), but as always YMMV. You may need to adjust setup.py further if you've installed FreeTDS in a different location. You can generally ignore the warnings from the linker about missing directories that may not exist on your system:
ld: warning: directory not found for option '-L/usr/local/lib/freetds'
One other note: You will probably have built FreeTDS for a single architecture, likely x86_64. By default, pymssl will be a multi-architecture build (assuming you're using the system Python 2.7.1), so even with a patched setup.py you will see a linker warning something like:
ld: warning: ignoring file /usr/local/lib/libsybdb.dylib, file was built for unsupported file format which is not the architecture being linked (i386)
That warning just indicates that the FreeTDS libraries only have single architecture version to link against. You can avoid the warning by using ARCHFLAGS to make a x86_64-only build:
ARCHFLAGS="-arch x86_64" python setup.py install
Or, try this fork, it installs without issues:
https://github.com/blackbass1988/pymssql-macos-lion
To install on OS X Mavericks, you need
OS X Command Line Tools
FreeTDS
brew install freetds
Cython
pip install cython
and then finally you can install the pymssql-macoslion
pip install git+git://github.com/blackbass1988/pymssql-macos-lion.git#master
Just incase anyone is reading this the following worked for me:
brew install freetds
sudo pip install pymssql
I'm pulling my hair out over here trying to set up MySQLdb on my Mac in order to connect to a remote MySQL server.
I have installed the latest C MySQL client libraries
I have installed XCode 4
I did naively try to install the module before installing XCode or the client libraries
I am attempting to set up the module by running the following commands in terminal:
$ sudo python setup.py build
$ sudo python setup.py install
Both of these commands fail with similar error messages. Here is the first stack trace:
running build
running build_py
copying MySQLdb/release.py -> build/lib.macosx-10.6-universal-2.6/MySQLdb
running build_ext
building '_mysql' extension
gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch i386 -arch ppc -arch x86_64 -pipe -Dversion_info=(1,2,3,'final',0) -D__version__=1.2.3 -I/usr/include/mysql -I/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c _mysql.c -o build/temp.macosx-10.6-universal-2.6/_mysql.o -fno-omit-frame-pointer -pipe
In file included from _mysql.c:36:
/usr/include/mysql/my_config.h:1030:2: warning: #warning defining SIZEOF_CHARP = 4
/usr/include/mysql/my_config.h:1044:2: warning: #warning defining SIZEOF_LONG = 4
/usr/libexec/gcc/powerpc-apple-darwin10/4.2.1/as: assembler (/usr/bin/../libexec/gcc/darwin/ppc/as or /usr/bin/../local/libexec/gcc/darwin/ppc/as) for architecture ppc not installed
Installed assemblers are:
/usr/bin/../libexec/gcc/darwin/x86_64/as for architecture x86_64
/usr/bin/../libexec/gcc/darwin/i386/as for architecture i386
In file included from _mysql.c:36:
/usr/include/mysql/my_config.h:1030:2: warning: #warning defining SIZEOF_CHARP = 4
/usr/include/mysql/my_config.h:1044:2: warning: #warning defining SIZEOF_LONG = 4
/usr/include/mysql/my_config.h:1151:1: warning: "WORDS_BIGENDIAN" redefined
In file included from /System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/Python.h:8,
from pymemcompat.h:10,
from _mysql.c:29:
/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/pyconfig.h:1014:1: warning: this is the location of the previous definition
_mysql.c:2888: fatal error: error writing to -: Broken pipe
compilation terminated.
In file included from _mysql.c:36:
/usr/include/mysql/my_config.h:1027:2: warning: #warning defining SIZEOF_CHARP = 8
/usr/include/mysql/my_config.h:1041:2: warning: #warning defining SIZEOF_LONG = 8
lipo: can't open input file: /var/tmp//ccU6bipK.out (No such file or directory)
error: command 'gcc-4.2' failed with exit status 1
And here is the stack trace for the second command:
running install
running bdist_egg
running egg_info
writing MySQL_python.egg-info/PKG-INFO
writing top-level names to MySQL_python.egg-info/top_level.txt
writing dependency_links to MySQL_python.egg-info/dependency_links.txt
reading manifest file 'MySQL_python.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'MANIFEST'
warning: no files found matching 'ChangeLog'
warning: no files found matching 'GPL'
writing manifest file 'MySQL_python.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.6-universal/egg
running install_lib
running build_py
copying MySQLdb/release.py -> build/lib.macosx-10.6-universal-2.6/MySQLdb
running build_ext
building '_mysql' extension
gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch i386 -arch ppc -arch x86_64 -pipe -Dversion_info=(1,2,3,'final',0) -D__version__=1.2.3 -I/usr/include/mysql -I/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c _mysql.c -o build/temp.macosx-10.6-universal-2.6/_mysql.o -fno-omit-frame-pointer -pipe
In file included from _mysql.c:36:
/usr/include/mysql/my_config.h:1030:2: warning: #warning defining SIZEOF_CHARP = 4
/usr/include/mysql/my_config.h:1044:2: warning: #warning defining SIZEOF_LONG = 4
/usr/libexec/gcc/powerpc-apple-darwin10/4.2.1/as: assembler (/usr/bin/../libexec/gcc/darwin/ppc/as or /usr/bin/../local/libexec/gcc/darwin/ppc/as) for architecture ppc not installed
Installed assemblers are:
/usr/bin/../libexec/gcc/darwin/x86_64/as for architecture x86_64
/usr/bin/../libexec/gcc/darwin/i386/as for architecture i386
In file included from _mysql.c:36:
/usr/include/mysql/my_config.h:1030:2: warning: #warning defining SIZEOF_CHARP = 4
/usr/include/mysql/my_config.h:1044:2: warning: #warning defining SIZEOF_LONG = 4
/usr/include/mysql/my_config.h:1151:1: warning: "WORDS_BIGENDIAN" redefined
In file included from /System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/Python.h:8,
from pymemcompat.h:10,
from _mysql.c:29:
/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/pyconfig.h:1014:1: warning: this is the location of the previous definition
_mysql.c:2888: fatal error: error writing to -: Broken pipe
compilation terminated.
In file included from _mysql.c:36:
/usr/include/mysql/my_config.h:1027:2: warning: #warning defining SIZEOF_CHARP = 8
/usr/include/mysql/my_config.h:1041:2: warning: #warning defining SIZEOF_LONG = 8
lipo: can't open input file: /var/tmp//cchhckGP.out (No such file or directory)
error: command 'gcc-4.2' failed with exit status 1
I have been at this for a few days now and it's starting to drive me nuts. Any help would be greatly appreciated!
You've set yourself up for headaches by installing the new and forward-looking Xcode 4 rather than the latest version of Xcode 3 which is what Mac OS X 10.6 was released with. The immediate issue you are running into is that Python tries to build C extension modules with the same configuration that Python itself was built. For 10.6, that includes three architectures: i386, x86_64, and ppc (for compatibility with programs build on earlier systems). Apparently Xcode 4 has removed support for building ppc archs. You may be able to get around this issue easily by using the ARCHFLAGS environment variable which is used to override the arch settings used by Python's Distutils when building extension modules. Try doing something like this (untested as I don't have Xcode 4 handy):
sudo bash
export ARCHFLAGS='-arch i386 -arch x86_64'
rm -r build
python setup.py build
python setup.py install
A better solution, as recommended elsewhere, is to not try to install MySQLdb on 10.6 by using the system Python and the MySQL binary installers. Rather, use a complete solution by installing everything via a package manager like MacPorts.
There is another way that I just found to solve this.
I encountered the same problem as you did, and my python's version is 2.7.4, and Xcode 4. Maybe you have just got the python of 32 bits, as I did. So I changed it to 2.7.5x64bit, then there should be no problems.
Has anyone succesffuly installed PyODBC on snow leopard?
I'm getting the error below. (I also submitted a bug here too) Any ideas how to fix this and get it installed?
Here is the output I'm getting:
$ python setup.py install
running install
running bdist_egg
running egg_info
writing pyodbc.egg-info/PKG-INFO
writing top-level names to pyodbc.egg-info/top_level.txt
writing dependency_links to pyodbc.egg-info/dependency_links.txt
reading manifest file 'pyodbc.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pyodbc.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.6-universal/egg
running install_lib
running build_ext
building 'pyodbc' extension
gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch i386 -arch ppc -arch x86_64 -pipe -DPYODBC_VERSION=2.1.8 -I/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c /Users/pinerog/Downloads/pyodbc-2.1.8/src/buffer.cpp -o build/temp.macosx-10.6-universal-2.6/Users/pinerog/Downloads/pyodbc-2.1.8/src/buffer.o
cc1plus: warning: command line option "-Wstrict-prototypes" is valid for C/ObjC but not for C++
/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/datetime.h:186: warning: ‘PyDateTimeAPI’ defined but not used
/usr/libexec/gcc/powerpc-apple-darwin10/4.2.1/as: assembler (/usr/bin/../libexec/gcc/darwin/ppc/as or /usr/bin/../local/libexec/gcc/darwin/ppc/as) for architecture ppc not installed
Installed assemblers are:
/usr/bin/../libexec/gcc/darwin/x86_64/as for architecture x86_64
/usr/bin/../libexec/gcc/darwin/i386/as for architecture i386
cc1plus: warning: command line option "-Wstrict-prototypes" is valid for C/ObjC but not for C++
/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/datetime.h:186: warning: ‘PyDateTimeAPI’ defined but not used
/Users/pinerog/Downloads/pyodbc-2.1.8/src/buffer.cpp:58: fatal error: error writing to -: Broken pipe
compilation terminated.
cc1plus: warning: command line option "-Wstrict-prototypes" is valid for C/ObjC but not for C++
/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/datetime.h:186: warning: ‘PyDateTimeAPI’ defined but not used
lipo: can't open input file: /var/folders/z3/z3Y30fNyGvennzCS3hWhkLlN-Ec/-Tmp-//ccZURNsn.out (No such file or directory)
error: command 'gcc-4.2' failed with exit status 1
Versions: PyODBC 2.1.8, Mac 10.6.7, and Python 2.6.1
Your problem is likely the combination of xcode 4 and setuptools. See this error:
/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/datetime.h:186: warning: ‘PyDateTimeAPI’ defined but not used
/usr/libexec/gcc/powerpc-apple-darwin10/4.2.1/as: assembler (/usr/bin/../libexec/gcc/darwin/ppc/as or /usr/bin/../local/libexec/gcc/darwin/ppc/as) for architecture ppc not installed
Installed assemblers are:
/usr/bin/../libexec/gcc/darwin/x86_64/as for architecture x86_64
/usr/bin/../libexec/gcc/darwin/i386/as for architecture i386
setuptools tries to compile for ppc but xcode 4 no longer supports it.
Try compiling like this:
ARCHFLAGS="-arch i386 -arch x86_64" python setup.py install
I use macports to install pyodbc
sudo port install py26-odbc
py26-odbc is for python 2.6. If you use Python 2.7, the name would be py27-odbc
First of all I am very new to all this.
I recently upgraded to Snow Leopard and installed the Xcode + iPhone dev package, 3.1.2.
I went on to install the Django framework + MYSQLDB handler. During the build stage, the terminal shows me the gcc exit status 1 error. But I have the Xcode already installed?
Where am I going wrong?
Also while trying to fix things up, I installed the Xcode that came with the Snow Leopard DVD. still the same error.
Now I think I should remove the Xcode completely and do a fresh install?
Is the ver.3.1.2 specific to 32-bit? Please help me out.
Here is the complete error:
Amit-Vermas-MacBook:mysql-python-1.2.2 amitverma$ gcc-4.0
i686-apple-darwin10-gcc-4.0.1: no input files
Amit-Vermas-MacBook:mysql-python-1.2.2 amitverma$ python setup.py build
running build
running build_py
copying MySQLdb/release.py -> build/lib.macosx-10.3-i386-2.5/MySQLdb
running build_ext
building '_mysql' extension
gcc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd -fno-common -dynamic -DNDEBUG -g -O3 -Dversion_info=(1,2,2,'final',0) -D__version__=1.2.2 -I/usr/local/mysql/include -I/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5 -c _mysql.c -o build/temp.macosx-10.3-i386-2.5/_mysql.o -g -Os -arch x86_64 -fno-common -D_P1003_1B_VISIBLE -DSIGNAL_WITH_VIO_CLOSE -DSIGNALS_DONT_BREAK_READ -DIGNORE_SIGHUP_SIGQUIT -DDONT_DECLARE_CXA_PURE_VIRTUAL
cc1: error: unrecognized command line option "-Wno-long-double"
error: command 'gcc' failed with exit status 1
I am not sure if you solved your problem. I got the exact same issue after I upgraded from Mac OS 10.4 to 10.6.
Following some blog posts, on a hunch, I ran setup.py pointing to an older gcc version (gcc-4.0).
CC='/usr/bin/gcc-4.0' python setup.py build
The build encountered few warnings.
running build
running build_py
copying MySQLdb/release.py -> build/lib.macosx-10.3-i386-2.5/MySQLdb
running build_ext
building '_mysql' extension
/usr/bin/gcc-4.0 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd -fno-common -dynamic -DNDEBUG -g -O3 -Dversion_info=(1,2,3,'gamma',1) -D__version__=1.2.3c1 -I/usr/local/mysql/include -I/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5 -c _mysql.c -o build/temp.macosx-10.3-i386-2.5/_mysql.o -g -Os -arch i386 -fno-common -D_P1003_1B_VISIBLE -DSIGNAL_WITH_VIO_CLOSE -DSIGNALS_DONT_BREAK_READ -DIGNORE_SIGHUP_SIGQUIT -DDONT_DECLARE_CXA_PURE_VIRTUAL
In file included from _mysql.c:36:
/usr/local/mysql/include/my_config.h:1050:1: warning: "HAVE_WCSCOLL" redefined
In file included from /Library/Frameworks/Python.framework/Versions/2.5/include/python2.5/Python.h:8,
from pymemcompat.h:10,
from _mysql.c:29:
/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5/pyconfig.h:724:1: warning: this is the location of the previous definition
gcc -arch i386 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -g -bundle -undefined dynamic_lookup build/temp.macosx-10.3-i386-2.5/_mysql.o -L/usr/local/mysql/lib -lmysqlclient_r -lz -lm -lmygcc -o build/lib.macosx-10.3-i386-2.5/_mysql.so
ld: warning: in build/temp.macosx-10.3-i386-2.5/_mysql.o, file is not of required architecture
ld: warning: in /usr/local/mysql/lib/libmysqlclient_r.dylib, file is not of required architecture
ld: warning: in /usr/local/mysql/lib/libmygcc.a, file is not of required architecture
Ran the same command again.
Everything works now magically. The install also went through. The module works as expected.
It normally also shows why a compilation fails. Could you give the text preceding "gcc exited with code 1" or something like that? And perhaps the source file also.
Also look for other threads on this subject, like this one. Good search terms on google or stack overflow are leopard and MySQLdb.
If it helps any, I solved this issue with sym links, and I think it will work for you. I wrote this with my version of gcc in mind, which is 4.2:
cd /usr/bin
rm cc gcc c++ g++
ln -s gcc-4.2 cc
ln -s gcc-4.2 gcc
ln -s c++-4.2 c++
ln -s g++-4.2 g++
ln -s gcc-4.2 gcc-4.0
There ya go!