I have a web app developed with web.py using python 2.7.5.
I need to deploy it on a server running Scientific Linux 6.5. It comes with python 2.6.6 and the system requires this version, so I had to install python 2.7.5 in parallel.
What I need to do is to install mod_wsgi that uses python 2.7.5. I couldn't find a pre-compiled package, so I attempted to build one from source. I downloaded the source of mod_wsgi-3.4.
I ran configure with:
./configure --with-python=/home/mapto/Python-2.7.5/python
and got response:
checking for apxs2... no
checking for apxs... /usr/sbin/apxs
checking Apache version... 2.2.15
configure: creating ./config.status
config.status: creating Makefile
When I run make it fails with:
/usr/bin/ld: /usr/local/lib/libpython2.7.a(abstract.o): relocation R_X86_64_32 against `.rodata.str1.8' can not be used when making a shared object; recompile with -fPIC
/usr/local/lib/libpython2.7.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
apxs:Error: Command failed with rc=65536
.
make: * [mod_wsgi.la] Error 1
How can I sort out this problem? Would it help installing apxs2? If so, how can I do that? (apparently when I executed "yum install httpd-devel" it installed apxs, not apxs2)
This worked for me: apxs:Error: Command failed with rc=65536
I had to also do this, because of the parallel python versions: Python executable not finding libpython shared library
Related
Most of the cx_Oracle 5.2.1 version builds are for Windows and Linux. How do I install/get an install for a Solaris 11 Sparc?
I tried to install using the following: cx_Oracle-5.2.1.tar.gz from sourceforge.net
But resulted in the following error:
/tmp/cx_Oracle-5.2.1$ python setup.py build
running build
running build_ext
building 'cx_Oracle' extension
creating build
creating build/temp.solaris-2.11-sun4v.32bit-2.7-11g
cc -DNDEBUG -KPIC -DPIC -I/u01/app/oracle/product/11.2.0.4/dbhome_1/rdbms/demo -I/u01/app/oracle/product/11.2.0.4/dbhome_1/rdbms/public -I/usr/include/python2.7 -c cx_Oracle.c -o build/temp.solaris-2.11-sun4v.32bit-2.7-11g/cx_Oracle.o -DBUILD_VERSION=5.2.1
unable to execute 'cc': No such file or directory
error: command 'cc' failed with exit status 1
Please advise.
Oracle (nor Sun, for that matter) did not include a compiler in the Solaris OS installation image. The Solaris Studio compiler is available for download, and of course you can also go the GCC route (UNIX Packages web site offers installable packages of GCC and various libraries needed for dependences for a modest fee.)
The original post is quote old though, and the solution as of now is to simply install the cx_oracle package from the 11.3 or 11.4 IPS.
I do not know the exact reason for the error you are getting. It looks, however, like the "cc" compiler is not installed. You should be able to find that package and install it. Or you will need to adjust your configuration to use gcc instead. This link may help:
http://www.unix.com/solaris/114262-command-cc-failed-even-though-gcc-installed.html
I tried to install graph-tool on Mac OSX 10.10 using homebrew. The brew build process works fine, but when I try to import graph-tool I get the error described in this question.
Another problem with homebrew is that I always builds graph-tool for python2.7 and it installs the packages in the Python 2.7 sit-packages folder. But I want to use it with Python 3.4. These are the reasons why I tried to build graph-tool from source.
The ./configure command automatically uses Python 2.7, too. So I passed it the desired Python version with ./configure PYTHON=python3.4
It then detects the correct version as well as the related paths but crash with the following error:
configure: error:
Could not link test program to Python. Maybe the
main Python library has been installed in some non-standard library
path. If so, pass it to configure, via the LDFLAGS environment
variable.
Example: ./configure LDFLAGS="-L/usr/non-standard-path/python/lib"
======================================================================
ERROR!
You probably have to install the development version of the
Python package for your distribution. The exact name of this package varies
among them.
======================================================================
The error occurs with and without PYTHON variable set.
From the output of ./configure I can see that everything works fine except for the last line, which says:
checking consistency of all components of python development
environment... no
Whats does the above line mean and how do I properly install graph-tool on my maschine?
The error message is explaining exactly what needs to be done. Since python was installed in a non-standard path, you need to pass the flag LDFLAGS="-L/usr/non-standard-path/python/lib" pointing to the directory where the python libraries are located. This is most likely "/usr/local/lib", if you are using homebrew.
I was getting this error when I was trying to install graph-tool using outdated an autoconf / automake / pkg-config combination (installed using yum in CentOS 5.10). Installing those packages from source fixed the problem... although I'm not sure how this related to my python installation....
It worked for me by passing the variable PYTHON_EXTRA_LDFLAGS="-Wl,-stack_size,1000000 -F/usr/local/Cellar/python3/3.6.3/Frameworks -framework CoreFoundation".
In your case, it would be the path to the homebrew installation of python3.4.
The way I found out is that in the config.log, the error message shows the following:
configure:19023: checking python extra libraries
configure:19030: result: -ldl -framework CoreFoundation
configure:19037: checking python extra linking flags
configure:19044: result: -Wl,-stack_size,1000000 -framework CoreFoundation Python.framework/Versions/3.6/Python
configure:19051: checking consistency of all components of python development environment
configure:19079: gcc -o conftest -g -O2 -DNDEBUG -I/usr/local/Cellar/python3/3.6.3/Frameworks/Python.framework/Versions/3.6/include/python3.6m -F/usr/local/Cellar/python3/3.6.3/Frameworks/ -Wl,-stack_size,1000000 -framework CoreFoundation Python.framework/Versions/3.6/Python conftest.c -L/usr/local/opt/python3/Frameworks/Python.framework/Versions/3.6/lib -lpython3.6m -ldl -framework CoreFoundation -ldl -framework CoreFoundation >&5
clang: error: no such file or directory: 'Python.framework/Versions/3.6/Python'
The error seems to be path 'Python.framework/Versions/3.6/Python', that in a homebrew installation does not exist. I search for the same path in the config.log and I found this line:
PYTHON_EXTRA_LDFLAGS="-Wl,-stack_size,1000000 -framework CoreFoundation Python.framework/Versions/3.6/Python"
So, the solution for me was to pass this variable with the right path.
I have just installed Python 3.4 on my Windows 7 64-bit machine, using Anaconda/Condas.
When I run the "hello world" cython example I get this error:
[py34] C:\Users\Jon\Documents\GitHub\CythonFunctions\cython_funcs>python setup.py build_ext --inplace
running build_ext
building 'cython_funcs.hello' extension
C:\Anaconda\envs\py34\MinGW\bin\gcc.exe -mdll -O -Wall -IC:\Anaconda\envs\py34\include -IC:\Anaconda\envs\py34\include -c hello.c -o build\temp.win-amd64-3.4\Release\hello.o
writing build\temp.win-amd64-3.4\Release\hello.def
C:\Anaconda\envs\py34\MinGW\bin\gcc.exe -shared -s build\temp.win-amd64-3.4\Release\hello.o build\temp.win-amd64-3.4\Release\hello.def -LC:\Anaconda\envs\py34\libs -LC:\Anaconda\envs\py34\PCbuild\amd6
4 -lpython34 -lmsvcr100 -o C:\Users\Jon\Documents\GitHub\CythonFunctions\cython_funcs\cython_funcs\hello.pyd
build\temp.win-amd64-3.4\Release\hello.o:hello.c:(.text+0x314): undefined reference to `__imp__PyThreadState_Current'
build\temp.win-amd64-3.4\Release\hello.o:hello.c:(.text+0x493): undefined reference to `__imp__Py_NoneStruct'
build\temp.win-amd64-3.4\Release\hello.o:hello.c:(.text+0x97b): undefined reference to `__imp_PyExc_ImportError'
collect2.exe: error: ld returned 1 exit status
error: command 'C:\\Anaconda\\envs\\py34\\MinGW\\bin\\gcc.exe' failed with exit status 1
From searching stackoverflow and google, this error occurs when the gcc and python versions are not both either 32 bit or 64 bit.
I have checked that my Python is 64 bit. The MinGW that I have, as can be seen from the path below, was part of my Python installation. How can I check if it is 64 bit or not? Or could this error be due to something else?
Update:
Strangely, the Ipython cythonmagic command here works fine:
http://docs.cython.org/src/quickstart/build.html?highlight=cythonmagic
One way would be to conda remove libpython (this will cause distutils to not use mingw), and install Visual Studio 2010, and use that to compile.
Your gcc line is missing a define: -DMS_WIN64. Anaconda (I presume) have modified the file cygwinccompiler.py in Lib/distutils of 2.7 envs, but this modification is not present in the distutils of the 3.4 env. I was getting different errors to yours, but this change fixed my setup.
I ran into a similar problem with Anaconda but it worked when I stopped trying to compile in the py34 directory. Instead put your helloworld.pyx file (make sure you change it to that extension .pyx as well) in the Anaconda3 folder along with the setup.py and when you compile make sure you are in the Anaconda3 folder as well so C:\Anaconda3 python setup.py build_ext --inplace. If memory serves this ran just fine.
This might work for linking problems (to be done in a temporary directory; copy instead of cp if not in a msys2 environment)
gendef c:/Windows/System32/python34.dll
dlltool -U -d python34.def -l libpython34.dll.a
cp libpython34.dll.a c:/Python34/libs
If gendef is unable to access python34.dll, it can be copied using windows explorer before gendef command.
gendef is available at least with mingw-w64 packages.
I am building YouCompleteMe plugin of vim, following this document. When I run make I get the following error.
Linking CXX shared library /home/sagar/.vim/bundle/YouCompleteMe/python/ycm_core.so
/usr/bin/ld: /usr/local/lib/libpython2.7.a(abstract.o): relocation R_X86_64_32S against `_Py_NotImplementedStruct' can not be used when making a shared object; recompile with -fPIC
/usr/local/lib/libpython2.7.a: could not read symbols: Bad value
collect2: error: ld returned 1 exit status
What is this error?
I have installed pyenv to manage python versions. Is it causing problem?
Make the linker point to the .so (shared object) file and not the .a (static lib) file.
You can do this specifying the flag when running cmake:
cmake -G "Unix Makefiles" -DPYTHON_LIBRARY=/usr/local/lib/libpython2.7.so . ~/.vim/bundle/YouCompleteme/cpp
Do mind that even though you're using pyenv, YouCompleteMe build may point to an undesired
python build as they are not correctly auto-detected right now.
If you're having this problem, you should probably also specify the Python header files correctly:
cmake -G "Unix Makefiles" -DPYTHON_LIBRARY=/usr/local/lib/libpython2.7.so -DPYTHON_INCLUDE_DIR=/usr/local/include/python . ~/.vim/bundle/YouCompleteme/cpp
PS=(I'm assuming your headers are in that path, do check before)
Since some paths were different on my system from the accepted answer (both the CMake and the python lib ones) I'm posting an alternate solution for the above problem:
Make sure to have a shared library version of libpython2.7.so
$ locate libpython
/usr/lib/x86_64-linux-gnu/libpython2.7.so.1
Either create a symlink to it from where CMake expects it to be
sudo ln -s "/usr/lib/x86_64-linux-gnu/libpython2.7.so.1" "/usr/lib/libpython2.7.so"
or alternatively, as written in YCM's build script code, you could add additional CMake options to ensure the .so library is properly found
export EXTRA_CMAKE_ARGS="-DPYTHON_LIBRARY=/usr/lib/x86_64-linux-gnu/libpython2.7.so.1"
I am setting up Python and Django on os X 10.7 from a virgin install and Xcode 4.3.
I tried using the default install of Python:
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/
I normally use a Python based package manager called easy_install.
Easy_install seems to not be able to find the compiler.
EDIT: When I tried to install MySQL-python I got this error:
$ sudo easy_install MySQL-python
Password:
Searching for MySQL-python
Reading http://pypi.python.org/simple/MySQL-python/
Reading http://sourceforge.net/projects/mysql-python/
Reading http://sourceforge.net/projects/mysql-python
Best match: MySQL-python 1.2.3
Downloading http://download.sourceforge.net/sourceforge/mysql-python/MySQL-python-1.2.3.tar.gz
Processing MySQL-python-1.2.3.tar.gz
Running MySQL-python-1.2.3/setup.py -q bdist_egg --dist-dir /tmp/easy_install-P9H9WX/MySQL-python-1.2.3/egg-dist-tmp-rRTfZL
warning: no files found matching 'MANIFEST'
warning: no files found matching 'ChangeLog'
warning: no files found matching 'GPL'
unable to execute llvm-gcc-4.2: No such file or directory
error: Setup script exited with error: command 'llvm-gcc-4.2' failed with exit status 1
error: Setup script exited with error: command 'llvm-gcc-4.2' failed with exit status 1
Apparently, the system attempts to use the same compiler used to compile the installed Python framework.
For some reason Apple didn't include llvm-gcc-4.2.
Xcode 4.1 used GCC, but with Xcode 4.3 that seems to have changed.
From what I can gather, Apple wants to use Clang as the compiler vs GCC.
So I added to .bash_profile:
cc=clang
I decided I would just recompile Python with clang but first, I needed to install readline.
Fail:
Wed Feb 22 16:04:59 ~/Downloads/readline-6.2
$ ./configure
checking build system type... i386-apple-darwin11.3.0
checking host system type... i386-apple-darwin11.3.0
Beginning configuration for readline-6.2 for i386-apple-darwin11.3.0
checking whether make sets $(MAKE)... no
checking for gcc... no
checking for cc... no
checking for cl.exe... no
configure: error: in `/Users/Bryan/Downloads/readline-6.2':
configure: error: no acceptable C compiler found in $PATH
See `config.log' for more details.
What the easiest way to install Django on Lion 10.7?
Did you install the command-line tools with Xcode 4.3? They are not installed by default. You can install them by going to the Downloads pane in Xcode 4.3's preferences.
Making it way too hard:
First, make sure you install Xcode (available for free in the Mac App Store). It includes all the build tools that might be necessary to compile certain Python packages.
To get easy_install just download setuptools and follow the instructions for installing on Mac OS X at that link.
Once that's done, you can easy_install virtualenv to get a nice segregated environment to work in.
For the MySQL issue you have to edit the site.cfgfile:
mysql_config = /usr/local/mysql/bin/mysql_config
And then:
$ python setup.py build
$ sudo python setup.py install
Try updating XCode and reinstall all global site-packages. You may also want to try pip instead of easy_install.
You can also try to compile with
export ARCHFLAGS='-arch i386 -arch x86_64'
This solved many of my problems in the past when upgrading OSX versions.