Sphinx "sphinxcontrib.httpdomain" package - python

I downloaded the 'sphinxcontrib.httpdomain' package and put into Sphinx-1.2 directory:
..../Sphinx-1.2/sphinx/sphinxcontrib/httpdomain.py
I modified the conf.py under the extensions
=[.., 'sphinx.sphinxcontrib.httpdomain']
and 'make clean html' failed:
Extension error: Could not import extension
sphinx.sphinxcontrib.httpdomain (exception: No module named
sphinxcontrib.httpdomain)
Any suggestions?

I found the sphinx.sphinxcontrib.httpdomain module inside the Python dependencies. It could be included inside Python or just using the Sphinx builder (modifying the config.pyas pointed on the comment, not tested by me).
To solve it 'as it is':
$ sudo apt-get install python-sphinxcontrib-httpdomain
From a Debian scratch image, I needed the following packages to successfully compile latexpdf:
$ sudo apt-get install python-sphinx python-sphinxcontrib-httpdomain texlive texlive-latex-extra
So I guess that python-sphinxcontrib-httpdomain also solves the problem for make html. Hope it helps!

Related

How to resolve CMake Error: Could not find a package configuration file provided by "boost_python3"

I tried to install the lanelet2 library according to the github installation guide at https://github.com/fzi-forschungszentrum-informatik/Lanelet2.
When I perform catkin build I get the following error:
Errors << lanelet2_python:cmake /home/student/catkin_ws/logs/lanelet2_python/build.cmake.000.log
CMake Error at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.71.0/BoostConfig.cmake:117 (find_package):
Could not find a package configuration file provided by "boost_python3"
(requested version 1.71.0) with any of the following names:
boost_python3Config.cmake
boost_python3-config.cmake
Add the installation prefix of "boost_python3" to CMAKE_PREFIX_PATH or set
"boost_python3_DIR" to a directory containing one of the above files. If
"boost_python3" provides a separate development package or SDK, be sure it
has been installed.
My OS is Ubuntu 20.04 with ROS noetic. The build is performed inside a venv with Python Version 3.8.10.
The command python is pointing to python3. I've also installed the following dependencies:
sudo apt-get install ros-noetic-rospack ros-noetic-catkin ros-noetic-mrt-cmake-modules
sudo apt-get install libboost-dev libeigen3-dev libgeographic-dev libpugixml-dev libpython3-dev libboost-python-dev python3-catkin-tools
Does someone have an idea how to resolve this error?
See neutrinoyu's comment at https://github.com/ethz-asl/kalibr/issues/368#issuecomment-651726289
/kalibr/Schweizer-Messer/numpy_eigen/cmake/add_python_export_library.cmake:89
change
list(APPEND BOOST_COMPONENTS python3)
to
list(APPEND BOOST_COMPONENTS python)

How to install dependencies from requirements.txt in a Yocto recipe for a local Python project

What I should have:
I want my Yocto Project to build a package for my Python project with all dependencies inside. The project has to run out of box on the resulting read-only sdcard image.
It simply should install all requirements in the required version to the package.
What I tried without luck:
Calling pip in do_install():
"pip/pip3 is not found", even it's in RDEPENDS.
Anyway, I really prefer this way.
With inherit pypi:
When trying with inherit pypi, it tries to get also my local sources (my pyton project) from pypi. And I have always to copy the requirements to the recipe. This is not my preferred way.
Calling pip in pkg_postinst():
It tries to install the modules on first start and fails, because the system has no internet connection and it's a read-only system. It must run out of the box without installation on first boot time. Does its stuff to late.
Where I'll get around:
There should be no need to change anything in the recipes when something changes in requirements.txt.
Background information
I'm working with Yocto Rocko in a Linux environment.
In the Hostsystem, there is no pip installed. I want to run this one installed from RDEPENDS in the target system.
Building the Package (only this recipe) with:
bitbake myproject
Building the whole sdcard image:
bitbake myProject-image-base
The recipe:
myproject.bb (relevant lines):
RDEPENDS_${PN} = "python3 python3-pip"
APP_SOURCES_DIR := "${#os.path.abspath(os.path.dirname(d.getVar('FILE', True)) + '/../../../../app-sources')}"
FILESEXTRAPATHS_prepend := "${THISDIR}/files:"
SRC_URI = " \
file://${APP_SOURCES_DIR}/myProject \
...
"
inherit allarch # tried also with pypi and setuptools3 for the pypi way.
do_install() { # Line 116
install -d -m 0755 ${D}/myProject
cp -R --no-dereference --preserve=mode,links -v ${APP_SOURCES_DIR}/myProject/* ${D}/myProject/
pip3 install -r ${APP_SOURCES_DIR}/myProject/requirements.txt
# Tried also python ${APP_SOURCES_DIR}/myProject/setup.py install
}
# Tried also this, but it's no option because the data MUST be included in the Package:
# pkg_postinst_${PN}() {
# #!/bin/sh -e
# pip3 install -r /myProject/requirements.txt
# }
FILES_${PN} = "/myProject/*"
Resulting Errors:
Expected to install the listed modules from requirements.txt into the myProject package, so that the python app will run directly on the resulting readonly sdcard image.
With pip, I get:
| /*/tmp/work/*/myProject/0.1.0-r0/temp/run.do_install: 116: pip3: not found
| WARNING: exit code 127 from a shell command.
| ERROR: Function failed: do_install ...
When using pypi:
404 Not Found
ERROR: myProject-0.1.0-r0 do_fetch: Fetcher failure for URL: 'https://files.pythonhosted.org/packages/source/m/myproject/myproject-0.1.0.tar.gz'. Unable to fetch URL from any source.
=> But it should not fetch myProject, since it is already local and nowhere remote.
Any ideas? What would be the best way to reach to a ready to use sdcard image without the need to change recipes when requirements.txt changes?
You should use RDEPENDS_${PN} to take care of your dependencies for your app in the recipe.
For example, assuming your python app needs aws-iot-device-sdk-python module, you should add it to RDEPENDS in the recipe. In your case, it would be like this:
RDEPENDS_${PN} = "python3 \
python3-pip \
python3-aws-iot-device-sdk-python \
"
Here's the link showing the Python modules supported by OpenEmbedded Layer.
https://layers.openembedded.org/layerindex/branch/master/layer/meta-python/
If the modules you need are not there, you will likely need to create recipes for the modules.
My newest findings:
Yocto/bitbake seems to suppress interpreting the requirements, because this breaks automatic dependency resolving what could lead to conflicts.
Reason: The required modules from setup.py would not be stored as independent packages, but as part of my package. So, bitbake does not know about this modules what could conflict with other packages that probably requires same modules in different versions.
What was in my recipe:
MY_INSTALL_ARGS = "--root=${D} \
--prefix=${prefix} \
--install-lib=${PYTHON_SITEPACKAGES_DIR} \
--install-data=${datadir}"
do_install() {
PYTHONPATH=${PYTHON_SITEPACKAGES_DIR} \
${STAGING_BINDIR_NATIVE}/${PYTHON_PN}-native/${PYTHON_PN} setup.py install ${MY_INSTALL_ARGS}
}
If I execute this outside of bitbake as python3 setup.py install ${MY_INSTALL_ARGS}, all will be installed correctly, but in the recipe, no requirements are installed.
There is a parameter --no-deps, but I didn't find where it is set.
I think there could be one possibility to exploit the requirements out of setup.py:
Find out where to disable --no-deps in the openembedded/poky layer for easy_install.
Creating a separate PYTHON_SITEPACKAGES_DIR
Install this separate PYTHON_SITEPACKAGES_DIR in eg the home directory as private python modules dir.
This way, no python module would trigger a conflict.
Since I do not have the time to experiment with this, I'll define now one recipe per requirement.
You try installing pip?
Debian
apt-get install python-pip
apt-get install python3-pip
Centos
yum install python-pip

Installing GDAL Python binding in Ubuntu to use as standalone module

I am trying to export a GeoTiff with Blender using the Blender Python API (based on Python 3), so I've decided to install GDAL on Ubuntu (14.04). What I would like is to get the module as a standalone folder that I could put in the modules directory of Blender (/home/user/.config/blender/2.73/scripts/modules).
The thing is I've run through several different problems trying to install GDAL. I've tried to install from source (for GDAL 2.0.0) here : Official PyPi Gdal
I ran sudo apt-get install libgdal-dev gdal-bin (I list it here because it may be important)
When I am in the extracted GDAL folder, using python setup.py build & python setup.py install, the library installs to /usr/local/lib/python2.7/dist-packages/osgeo. However, when I run python from command line, running from osgeo import osr returns ImportError: No module named _gdal
Following GDAL via pip , I used pip (pip install GDAL) to install the library, and the folder it went to was /usr/lib/python3/dist-packages/osgeo (using pip show ...). Again, running python3 and trying to import results in the same error. Of course, when I copy-paste each folder in the blender module directory, I get the same error in the Blender Python console.
So I decided to compile the sources using ./configure --with-python & make & make install in the source folder. I then copied the folder GDAL-x.x.x/build/lib.linux-x86_64-3.4/osgeo to the blender modules directory and got this time the error when importing : ImportError: /home/yvesu/.config/blender/2.73/scripts/modules/osgeo/_gdal.so: undefined symbol: _Py_ZeroStruct.
Trying to compile with python3 using python3 setup.py build returns the error error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
EDIT 1:
I think I've found the solution : I went to the directory swig/python (not found in a GDAL-1.11.0 folder but gdal-1.11.0 fodler, can't remember where I downloaded it from), ran python3 setup.py build & python3 setup.py install and could finally find the folder in /usr/local/lib/python3.4/dist-packages/GDAL-1.11.0-py3.4-linux-x86_64.egg/osgeo. When I put this osgeo folder oni the Blender modules directory, I was able to import osgeo in Blender. I will report if anything went wrong.
I think I've listed all my attempts at installing GDAL on Ubuntu. Can anyone point me in the right direction? Do you think it is even possible to install it as a standalone module, or do I need linked libraries through LD_LIBRARY_PATH?
Here is the solution I've found :
Download Gdal sources (v2.0.0 is the current stable release) from ftp://ftp.remotesensing.org/gdal/2.0.0/ or http://download.osgeo.org/gdal/2.0.0/ and untar
Go to the directory gdal2.0.0/swig/python
Run python3 setup.py build & python3 setup.py install
Finally find the module folder in, on Ubuntu : /usr/local/lib/python3.4/dist-packages/GDAL-2.0.0-py3.4-linux-x86_64.egg/osgeo
I can now use it in Blender (copying in the modules directory)

Install m2crypto on a virtualenv without system packages

I have created a virtual environment without the system packages with python's virtualenv in Ubuntu and installed m2crypto, but when I execute a shell and I try to import M2Crypto i get the following error:
ImportError: /home/imediava/.virtualenvs/myenv/local/lib/python2.7/site-
packages/M2Crypto/__m2crypto.so: undefined symbol: SSLv2_method
From outside the environment I run into the same problem unless from ubuntu I install python-m2crypto with apt-get. I know that I could create the environment with the system packages but I would prefer not to do it.
Is there anyway that I could create a virtual environment without the system packages and then install m2crypto with pip without running into the SSLv2_method?
There seems to be a regression bug from an earlier version of M2Crypto.
After placing M2Crypto's source in your virtualenv, you can try to patch it with the diff code below.
You do this by downloading the source code, untar it via:
tar -xzf M2Crypto-0.21.1.tar.gz
This should create the directory M2Crypto-0.21.1 which will contain the SWIG directory
In SWIG you'll find _ssl.i, which is the file to be patched. In the same directory create a file called _ssl.i.patch for example using the nano editor and paste the complete diff code listed below into it.
Next issue the patch _ssl.i _ssl.i.patch command to merge the patch into the code. (Afterwards you may remove the patch file if you want.)
Finally issue the commands:
python setup.py build
followed by:
python setup.py install
to install manually.
diff code:
--- SWIG/_ssl.i 2011-01-15 20:10:06.000000000 +0100
+++ SWIG/_ssl.i 2012-06-17 17:39:05.292769292 +0200
## -48,8 +48,10 ##
%rename(ssl_get_alert_desc_v) SSL_alert_desc_string_long;
extern const char *SSL_alert_desc_string_long(int);
+#ifndef OPENSSL_NO_SSL2
%rename(sslv2_method) SSLv2_method;
extern SSL_METHOD *SSLv2_method(void);
+#endif
%rename(sslv3_method) SSLv3_method;
extern SSL_METHOD *SSLv3_method(void);
%rename(sslv23_method) SSLv23_method;
You can install this lib in your global environment and then just copy from your global site-packages to virtualenv.
M2Crypto 0.22.3 (the current version in pypi) fixes this problem, so the simplest solution is now simply:
pip install --upgrade M2Crypto
M2Crypto 0.22.3 has been released from martinpaljak's github repository, rather than from the original M2Crypto repository.
I had the same problem with the current release (M2Crypto-0.22.5). The latest RC build worked for me.
pip install M2Crypto==0.22.6rc4
There is a patch slated for 0.26.1.
In the meantime, you can clone the repo, apply the patch, and install from source.
git clone https://gitlab.com/m2crypto/m2crypto.git
(
cd m2crypto
git checkout 0.25.1
curl 'https://gitlab.com/m2crypto/m2crypto/merge_requests/117.diff' | git apply -v
)
pip install -U m2crypto

Python setuptools import error (Using NetBeans)

I tried to find a question that would answer to this question but wasn't succesful, so I made a new question.
I'm trying to compile my old Python Tic Tac Toe game in NetBeans, but I get the error message
ImportError: No module named setuptools
In my actual code I haven't imported a module named setuptools. As much as I understand the compiler generates a setup.py file and tries to use that setuptools module in there. How can I fix that problem?
I'm pretty sure that the problem isn't in the code as that same code worked perfectly the time when I actually made it and I haven't changed it after that.
You need to install either setuptools or Distribute in your Python instance. Follow the directions at either web page.
wget http://pypi.python.org/packages/source/s/setuptools/setuptools-0.6c11.tar.gz
tar zxvf setuptools-0.6c11.tar.gz
cd setuptools-0.6c11
python setup.py build
python setup.py install
Same answer as Satya, but easier to copy&paste:
wget http://pypi.python.org/packages/source/s/setuptools/setuptools-0.6c11.tar.gz
tar zxvf setuptools-0.6c11.tar.gz
cd setuptools-0.6c11
python setup.py build
sudo python setup.py install
Same answer as above, but since I dont have comment rights here is the working version which ignores the certificate mismatch for ssl auto-redirect :
wget --no-check-certificate http://pypi.python.org/packages/source/s/setuptools/setuptools-0.6c11.tar.gz
tar zxvf setuptools-0.6c11.tar.gz
cd setuptools-0.6c11
python setup.py build
sudo python setup.py install

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