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PyCharm: Process finished with exit code 0

I am new to PyCharm and I have 'Process finished with exit code 0' instead of getting (683, 11) as a result (please see attachment), could you guys help me out please? Much appreciate it!

That is good news! It means that there is no error with your code. You have run it right through and there is nothing wrong with it. Pycharm returns 0 when it has found no errors (plus any output you give it) and returns 1 as well as an error message when it encounters errors.
Editors and scripts do not behave like the interactive terminal, when you run a function it does not automatically show the the result. You need to actually tell it to do it yourself.
Generally you just print the results.
If you use print(data.shape) it should return what you expect with the success message Process finished with exit code 0.

exit code 0 means you code run with no error.
Let's give a error code for example(clearly in the below image): in below code, the variable lst is an empty list,
but we get the 5 member in it(which not exists), so the program throws IndexError, and exit 1 which means there is error with the code.
You can also define exit code for analysis, for example:
ERROR_USERNAME, ERROR_PASSWORD, RIGHT_CODE = 683, 11, 0
right_name, right_password = 'xy', 'xy'
name, password = 'xy', 'wrong_password'
if name != right_name:
exit(ERROR_USERNAME)
if password != right_password:
exit(ERROR_PASSWORD)
exit(RIGHT_CODE)

I would recommend you to read up onexit codes.
exit 0 means no error.
exit 1 means there is some error in your code.
This is not pyCharm or python specific. This is a very common practice in most of the programming languages. Where exit 0 means the successful execution of the program and a non zero exit code indicates an error.

Almost all the program(C++/python/java..) return 0 if it runs successful.That isn't specific to pycharm or python.
In program there is no need to invoke exit function explicitly when it runs success it invoke exit(0) by default, invoke exit(not_zero_num) when runs failed.
You can also invoke exit function with different code(num) for analysis.
You can also see https://en.wikipedia.org/wiki/Exit_(system_call) for more details.

What worked for me when this happened was to go to
Run --> Edit Configurations --> Execution --> check the box Run with
Python Console (which was unchecked).

This means that the compilation was successful (no errors). PyCharm and command prompt (Windows OS), terminal (Ubuntu) don't work the same way. PyCharm is an editor and if you want to print something, you explicitly have to write the print statement:
print(whatever_you_want_to_print)
In your case,
print(data.shape)

I think there's no problem in your code and you could find your print results (and other outputs) in the tab 5: Debug rather than 4: Run.

I just ran into this, but couldn't even run a simple print('hello world') function.
Turns out Comodo's Firewall was stopping the script from printing. This is a pretty easy fix by deleting Python out of the Settings > Advanced > Script Analysis portion of Comodo.
Good Luck

I had same problem with yours. And I finally solve it
I see you are trying to run code "Kaggle - BreastCancer.py"
but your pycharm try to run "Breast.py" instead of your code.
(I think Breast.py only contains functions so pycharm can run without showing any result)
Check on tab [Run] which code you are trying to run.

Your starting the program's run from a different file than you have open there. In Run (alt+shift+F10), set the python file you would like to run or debug.

NGINX/Apache and disabling assertions in Python [duplicate]

I'm running a python script from inside a different software (it provides a python interface to manipulate its data structures).
I'm optimizing my code for speed and would like to see what impact on performance my asserts have.
I'm unable to use python -O. What other options do I have, to programatically disable all asserts in python code? The variable __debug__ (which is cleared by -O flag) cannot be assigned to :(

The docs say,
The value for the built-in variable [__debug__] is determined when the
interpreter starts.
So, if you can not control how the python interpreter is started, then it looks like you can not disable assert.
Here then are some other options:
The safest way is to manually remove all the assert statements.
If all your assert statements occur on lines by themselves, then
perhaps you could remove them with
sed -i 's/assert /pass #assert /g' script.py
Note that this will mangle your code if other code comes after the assert. For example, the sed command above would comment-out the return in a line like this:
assert x; return True
which would change the logic of your program.
If you have code like this, it would probably be best to manually remove the asserts.
There might be a way to remove them programmatically by parsing your
script with the tokenize module, but writing such a program to
remove asserts may take more time than it would take to manually
remove the asserts, especially if this is a one-time job.
If the other piece of software accepts .pyc files, then there is a
dirty trick which seems to work on my machine, though note a Python
core developer warns against this (See Éric Araujo's comment on 2011-09-17). Suppose your script is called script.py.
Make a temporary script called, say, temp.py:
import script
Run python -O temp.py. This creates script.pyo.
Move script.py and script.pyc (if it exists) out of your PYTHONPATH
or whatever directory the other software is reading to find your
script.
Rename script.pyo --> script.pyc.
Now when the other software tries to import your script, it will
only find the pyc file, which has the asserts removed.
For example, if script.py looks like this:
assert False
print('Got here')
then running python temp.py will now print Got here instead of raising an AssertionError.

You may be able to do this with an environment variable, as described in this other answer. Setting PYTHONOPTIMIZE=1 is equivalent to starting Python with the -O option. As an example, this works in Blender 2.78, which embeds Python 3.5:
blender --python-expr 'assert False; print("foo")'
PYTHONOPTIMIZE=1 blender --python-expr 'assert False; print("foo")'
The first command prints a traceback, while the second just prints "foo".

As #unutbu describes, there is no official way of doing this. However, a simple strategy is to define a flag like _test somewhere (for example, as keyword argument to a function, or as a global variable in a module), then include this in your assert statements as follows:
def f(x, _test=True):
assert not _test or x > 0
...
Then you can disable asserts in that function if needed.
f(x, _test=False)

Python CLI program unit testing

I am working on a python Command-Line-Interface program, and I find it boring when doing testings, for example, here is the help information of the program:
usage: pyconv [-h] [-f ENCODING] [-t ENCODING] [-o file_path] file_path
Convert text file from one encoding to another.
positional arguments:
file_path
optional arguments:
-h, --help show this help message and exit
-f ENCODING, --from ENCODING
Encoding of source file
-t ENCODING, --to ENCODING
Encoding you want
-o file_path, --output file_path
Output file path
When I made changes on the program and want to test something, I must open a terminal,
type the command(with options and arguments), type enter, and see if any error occurs
while running. If error really occurs, I must go back to the editor and check the code
from top to end, guessing where the bug positions, make small changes, write print lines,
return to the terminal, run command again...
Recursively.
So my question is, what is the best way to do testing with CLI program, can it be as easy
as unit testing with normal python scripts?

I think it's perfectly fine to test functionally on a whole-program level. It's still possible to test one aspect/option per test. This way you can be sure that the program really works as a whole. Writing unit-tests usually means that you get to execute your tests quicker and that failures are usually easier to interpret/understand. But unit-tests are typically more tied to the program structure, requiring more refactoring effort when you internally change things.
Anyway, using py.test, here is a little example for testing a latin1 to utf8 conversion for pyconv::
# content of test_pyconv.py
import pytest
# we reuse a bit of pytest's own testing machinery, this should eventually come
# from a separatedly installable pytest-cli plugin.
pytest_plugins = ["pytester"]
#pytest.fixture
def run(testdir):
def do_run(*args):
args = ["pyconv"] + list(args)
return testdir._run(*args)
return do_run
def test_pyconv_latin1_to_utf8(tmpdir, run):
input = tmpdir.join("example.txt")
content = unicode("\xc3\xa4\xc3\xb6", "latin1")
with input.open("wb") as f:
f.write(content.encode("latin1"))
output = tmpdir.join("example.txt.utf8")
result = run("-flatin1", "-tutf8", input, "-o", output)
assert result.ret == 0
with output.open("rb") as f:
newcontent = f.read()
assert content.encode("utf8") == newcontent
After installing pytest ("pip install pytest") you can run it like this::
$ py.test test_pyconv.py
=========================== test session starts ============================
platform linux2 -- Python 2.7.3 -- pytest-2.4.5dev1
collected 1 items
test_pyconv.py .
========================= 1 passed in 0.40 seconds =========================
The example reuses some internal machinery of pytest's own testing by leveraging pytest's fixture mechanism, see http://pytest.org/latest/fixture.html. If you forget about the details for a moment, you can just work from the fact that "run" and "tmpdir" are provided for helping you to prepare and run tests. If you want to play, you can try to insert a failing assert-statement or simply "assert 0" and then look at the traceback or issue "py.test --pdb" to enter a python prompt.

Start from the user interface with functional tests and work down towards unit tests. It can feel difficult, especially when you use the argparse module or the click package, which take control of the application entry point.
The cli-test-helpers Python package has examples and helper functions (context managers) for a holistic approach on writing tests for your CLI. It's a simple idea, and one that works perfectly with TDD:
Start with functional tests (to ensure your user interface definition) and
Work towards unit tests (to ensure your implementation contracts)
Functional tests
NOTE: I assume you develop code that is deployed with a setup.py file or is run as a module (-m).
Is the entrypoint script installed? (tests the configuration in your setup.py)
Can this package be run as a Python module? (i.e. without having to be installed)
Is command XYZ available? etc. Cover your entire CLI usage here!
Those tests are simplistic: They run the shell command you would enter in the terminal, e.g.
def test_entrypoint():
exit_status = os.system('foobar --help')
assert exit_status == 0
Note the trick to use a non-destructive operation (e.g. --help or --version) as we can't mock anything with this approach.
Towards unit tests
To test single aspects inside the application you will need to mimic things like command line arguments and maybe environment variables. You will also need to catch the exiting of your script to avoid the tests to fail for SystemExit exceptions.
Example with ArgvContext to mimic command line arguments:
#patch('foobar.command.baz')
def test_cli_command(mock_command):
"""Is the correct code called when invoked via the CLI?"""
with ArgvContext('foobar', 'baz'), pytest.raises(SystemExit):
foobar.cli.main()
assert mock_command.called
Note that we mock the function that we want our CLI framework (click in this example) to call, and that we catch SystemExit that the framework naturally raises. The context managers are provided by cli-test-helpers and pytest.
Unit tests
The rest is business as usual. With the above two strategies we've overcome the control a CLI framework may have taken away from us. The rest is usual unit testing. TDD-style hopefully.
Disclosure: I am the author of the cli-test-helpers Python package.

So my question is, what is the best way to do testing with CLI program, can it be as easy as unit testing with normal python scripts?
The only difference is that when you run Python module as a script, its __name__ attribute is set to '__main__'. So generally, if you intend to run your script from command line it should have following form:
import sys
# function and class definitions, etc.
# ...
def foo(arg):
pass
def main():
"""Entry point to the script"""
# Do parsing of command line arguments and other stuff here. And then
# make calls to whatever functions and classes that are defined in your
# module. For example:
foo(sys.argv[1])
if __name__ == '__main__':
main()
Now there is no difference, how you would use it: as a script or as a module. So inside your unit-testing code you can just import foo function, call it and make any assertions you want.

Maybe too little too late,
but you can always use
import os.system
result = os.system(<'Insert your command with options here'>
assert(0 == result)
In that way, you can run your program as if it was from command line, and evaluate the exit code.
(Update after I studied pytest)
You can also use capsys.
(from running pytest --fixtures)
capsys
Enable text capturing of writes to sys.stdout and sys.stderr.
The captured output is made available via ``capsys.readouterr()`` method
calls, which return a ``(out, err)`` namedtuple.
``out`` and ``err`` will be ``text`` objects.

This isn't for Python specifically, but what I do to test command-line scripts is to run them with various predetermined inputs and options and store the correct output in a file. Then, to test them when I make changes, I simply run the new script and pipe the output into diff correct_output -. If the files are the same, it outputs nothing. If they're different, it shows you where. This will only work if you are on Linux or OS X; on Windows, you will have to get MSYS.
Example:
python mycliprogram --someoption "some input" | diff correct_output -
To make it even easier, you can add all these test runs to your 'make test' Makefile target, which I assume you already have. ;)
If you are running many of these at once, you could make it a little more obvious where each one ends by adding a fail tag:
python mycliprogram --someoption "some input" | diff correct_output - || tput setaf 1 && echo "FAILED"

The short answer is yes, you can use unit tests, and should. If your code is well structured, it should be quite easy to test each component separately, and if you need to to can always mock sys.argv to simulate running it with different arguments.

pytest-console-scripts is a Pytest plugin for testing python scripts installed via console_scripts entry point of setup.py.

For Python 3.5+, you can use the simpler subprocess.run to call your CLI command from your test.
Using pytest:
import subprocess
def test_command__works_properly():
try:
result = subprocess.run(['command', '--argument', 'value'], check=True, capture_output=True, text=True)
except subprocess.CalledProcessError as error:
print(error.stdout)
print(error.stderr)
raise error
The output can be accessed via result.stdout, result.stderr, and result.returncode if needed.
The check parameter causes an exception to be raised if an error occurs. Note Python 3.7+ is required for the capture_output and text parameters, which simplify capturing and reading stdout/stderr.

Given that you are explicitly asking about testing for a command line application, I believe that you are aware of unit-testing tools in python and that you are actually looking for a tool to automate end-to-end tests of a command line tool. There are a couple of tools out there that are specifically designed for that. If you are looking for something that's pip-installable, I would recommend cram. It integrates well with the rest of the python environment (e.g. through a pytest extension) and it's quite easy to use:
Simply write the commands you want to run prepended with $ and the expected output prepended with . For example, the following would be a valid cram test:
$ echo Hello
Hello
By having four spaces in front of expected output and two in front of the test, you can actually use these tests to also write documentation. More on that on the website.

You can use standard unittest module:
# python -m unittest <test module>
or use nose as a testing framework. Just write classic unittest files in separate directory and run:
# nosetests <test modules directory>
Writing unittests is easy. Just follow online manual for unittesting

I would not test the program as a whole this is not a good test strategy and may not actually catch the actual spot of the error. The CLI interface is just front end to an API. You test the API via your unit tests and then when you make a change to a specific part you have a test case to exercise that change.
So, restructure your application so that you test the API and not the application it self. But, you can have a functional test that actually does run the full application and checks that the output is correct.
In short, yes testing the code is the same as testing any other code, but you must test the individual parts rather than their combination as a whole to ensure that your changes do not break everything.

Disabling python's assert() without -0 flag

I'm running a python script from inside a different software (it provides a python interface to manipulate its data structures).
I'm optimizing my code for speed and would like to see what impact on performance my asserts have.
I'm unable to use python -O. What other options do I have, to programatically disable all asserts in python code? The variable __debug__ (which is cleared by -O flag) cannot be assigned to :(

The docs say,
The value for the built-in variable [__debug__] is determined when the
interpreter starts.
So, if you can not control how the python interpreter is started, then it looks like you can not disable assert.
Here then are some other options:
The safest way is to manually remove all the assert statements.
If all your assert statements occur on lines by themselves, then
perhaps you could remove them with
sed -i 's/assert /pass #assert /g' script.py
Note that this will mangle your code if other code comes after the assert. For example, the sed command above would comment-out the return in a line like this:
assert x; return True
which would change the logic of your program.
If you have code like this, it would probably be best to manually remove the asserts.
There might be a way to remove them programmatically by parsing your
script with the tokenize module, but writing such a program to
remove asserts may take more time than it would take to manually
remove the asserts, especially if this is a one-time job.
If the other piece of software accepts .pyc files, then there is a
dirty trick which seems to work on my machine, though note a Python
core developer warns against this (See Éric Araujo's comment on 2011-09-17). Suppose your script is called script.py.
Make a temporary script called, say, temp.py:
import script
Run python -O temp.py. This creates script.pyo.
Move script.py and script.pyc (if it exists) out of your PYTHONPATH
or whatever directory the other software is reading to find your
script.
Rename script.pyo --> script.pyc.
Now when the other software tries to import your script, it will
only find the pyc file, which has the asserts removed.
For example, if script.py looks like this:
assert False
print('Got here')
then running python temp.py will now print Got here instead of raising an AssertionError.

You may be able to do this with an environment variable, as described in this other answer. Setting PYTHONOPTIMIZE=1 is equivalent to starting Python with the -O option. As an example, this works in Blender 2.78, which embeds Python 3.5:
blender --python-expr 'assert False; print("foo")'
PYTHONOPTIMIZE=1 blender --python-expr 'assert False; print("foo")'
The first command prints a traceback, while the second just prints "foo".

As #unutbu describes, there is no official way of doing this. However, a simple strategy is to define a flag like _test somewhere (for example, as keyword argument to a function, or as a global variable in a module), then include this in your assert statements as follows:
def f(x, _test=True):
assert not _test or x > 0
...
Then you can disable asserts in that function if needed.
f(x, _test=False)

Python exit codes

Where can I find information about meaning of exit codes of "python" process on Unix? For instance, if I do "python thisfiledoesntexist.py", I get exit code 2
Summary:
from errno import errorcode
print errorcode[2]

As stated, mostly the error codes come from the executed script and sys.exit().
The example with a non-existing file as an argument to the interpreter fall in a different category. Though it's stated nowhere I would guess, that these exit codes are the "standard" Linux error codes. There is a module called errno that provides these error numbers (the exit codes come from linux/include/errno.h.
I.e.: errno.ENOENT (stands for for "No such file or directory") has the number 2 which coincides with your example.

The Python manual states this regarding its exit codes:
Some systems have a convention for assigning specific meanings to specific exit codes, but these are generally underdeveloped; Unix programs generally use 2 for command line syntax errors and 1 for all other kind of errors.
So, since you specified thisfiledoesntexist.py as a command line argument, you get a return code of 2 (assuming the file does not, in fact, exist. In that case I'd recommend renaming it to thisfiledoesexist.py. ;) )
Other that such parsing errors, the return code is determined by the Python program run. 0 is returned unless you specify another exit code with sys.exit. Python itself does not interfere.

Maybe exit code constants from os module can help you. Also have a look at sys.exit documentation.

Unfortunately, there is no 100% guarantee that Python's exit codes will be what the documentation claims they will be: os._exit allows the Python programmer to define which exit code is supposed to be used, which means python file_exists_but_claims_that_it_does_not.py could exit with os.EX_DATAERR.