I'm trying to port)cwiid from python 2.7 to 3.2.
It uses a lot of deprecated stuff so I have to change a lot of stuff in order to have it work with 3.2. Right now I'm stuck because of a load error. With a python 3.2 environment and the library installed to the package repo I do:
prompt: echo "import cwiid" | python -
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ImportError: dynamic module does not define init function (PyInit_cwiid)
Besides blind searching in the source code, where does python expect the PyInit_cwiid method?
In the source code for example there is the py_plugin.c which contains a py_init method.
Related
I have a simple module called mini. It can be imported in either python interactive interpreter or a python .py script. The module is a C extension based so I want to debug it in gdb (version > 7). I learned that gdb has python command to interpret python command or script like:
(gdb) python import mini
However, it failed to import the module by saying:
Traceback (most recent call last):
File "<string>", line 1, in <module>
ImportError: No module named mini
I guess it might be the environment setting with either my gdb setting or my linux searching path setting. What will be the possible reason of this problem? Thanks.
I am getting below ImportError while running a python file.
ImportError: No module named osgeo.gdal_array
!/usr/bin/env python
from osgeo.gdal_array import BandReadAsArray
However, if i try to import same from command line, it runs fine.
$ which python
/home/hduser/anaconda2/bin/python
$ python
>>> from osgeo.gdal_array import BandReadAsArray
>>>
Also, please see the below where i am getting the same ImportError.
$ /usr/local/bin/python2.7
>>> from osgeo.gdal_array import BandReadAsArray
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ImportError: No module named osgeo.gdal_array
I figured out that there is something going on between different versions of python. But, i do not want to change the original source code.
How do i make my program run without changing anything within the code of calling python installed in anaconda explicitly?
I am trying to install pysam and pybedtools modules on python 3.4. But I got an Error:
Collecting pysam
Using cached pysam-0.9.0.tar.gz
Complete output from command python setup.py egg_info:
'.' is not recognized as an internal or external command,
operable program or batch file.
# pysam: htslib mode is shared
# pysam: htslib configure options: None
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\ikirov.CLO\AppData\Local\Temp\pip-build-_me_xeme\pysam\setup.py", line 212, in <module>
sys.abiflags)]
AttributeError: 'module' object has no attribute 'abiflags'
Could you please help me with it?
Hi I got the same error last year during one of my class.
As I know back then, pysam simply won't work with python3 + windows environment.
See this: https://github.com/pysam-developers/pysam/issues/353 looks like it is still unsolved now.
For my homework, I just used this http://bow.codeplex.com/
And my suggestion, just try to use linux or get a python2. Yes I know the scientific field is the slowest for the 2->3 transition. It sucks.
I'm trying to run some tests in PyCharm using Behave and it keeps telling me I have this issue:
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/2.7/bin/behave", line 7, in <module>
from behave.__main__ import main
ImportError: No module named behave.__main__
I had a colleague clone the project and they can run it fine on their machine, any insights?
Python 2.7.10
$ pip freeze | grep ehave
behave==1.2.5
The issue is that in Project Interpreter, I was using a different version of Python on my machine that did not have behave installed/included.
From Pycharm settings -> Project -> Python interpreter , search for behave and include it into your ptoject.
I am trying to set up sleepy.mongoose, a mongoDB REST interface using the instructions here.
I am using windows 8, :( ...anyway... I have python 3.3.2 installed and it is accessible from the cmd prompt. I also have pymongo installed, when i enter help('modules') to python, pymongo is on the list of available modules!
But when I try to run python httpd.py from the sleepy.mongoose dir (thanks karthikr), I get an error:
C:\Users\Brook\Desktop\sleepy.mongoose>python httpd.py
Traceback (most recent call last):
File "httpd.py", line 1, in <module>
sleepymongoose/httpd.py
NameError: name 'sleepymongoose' is not defined
Now I tried actually cding into the proper dir, but I get this other error:
C:\Users\Brook\Desktop\sleepy.mongoose\sleepymongoose>python httpd.py
File "httpd.py", line 221
print "\n================================="
^
SyntaxError: invalid syntax
I have had the same problem with Python 2.7 on Windows. Considering 'httpd.py' wich contains only:
sleepymongoose/httpd.py
You need this command line to start it:
python sleepymongoose/httpd.py
You are using python 3 to run python 2 code. The syntax for print amongst other things has changed. Use Python 2 or a server which supports python 3.