I'm not having much success when attempting building pgmagick on OS X Lion with XCode 4.3.1.
I've installed both ImageMagick and GraphicsMagick, along side boost, using the following commands (via homebrew):
$ brew install graphicsmagick --with-magick-plus-plus
$ brew install imagemagick --with-magick-plus-plus
$ brew install boost --with-thread-unsafe
then I'm cloning the repo at https://bitbucket.org/hhatto/pgmagick:
$ hg clone https://bitbucket.org/hhatto/pgmagick/src
$ cd pgmagick
$ python setup.py build
However I always receive the following error:
ld: library not found for -lboost_python
collect2: ld returned 1 exit status
Based on the output on stdout, setup is looking in the right place for the boost (/usr/local/lib).
I've also tried easy_install and pip but with no luck. I'm using Pythonbrew but have also disabled this and tried using the stock python install -- still no success.
Any suggestions on how I can fix the problem, or further diagnose the issue?
According to my own reproduction of this issue in brew 0.9 and OSX 10.6.8, the problem is --with-thread-unsafe isn't being honored by the current brew formula file. You can verify this by checking the formula with brew edit boost and seeing if the option appears within the contents of the formula.
Because of this, libboost_python-mt.a and libboost_python-mt.dylib are being built instead of libboost_python.a and libboost_python.dylib.
The easiest ways to fix this are to edit your pgmagick setup.py to replace boost_lib="boost_python" with boost_lib="boost_python-mt" (as pointed out here) or to follow the instructions and patch here. It's otherwise a known issue.
The boost_python lib inside /usr/local/lib/ is named after libboost_python-mt.a and libboost_python-mt.dylib, since the default compiling is w/ multi-threads supporting enabled.
Grep boost_lib="boost_python" under ELSE condition in setup.py and replace it w/ boost_lib="boost_python-mt", will fix the "not found" issue.
Also it's OK to ln "-mt" version to libboost_python.a: as described here for linux boost which no longer appends '-mt' suffix since 1.42.
Ignore this line or you could "with-boost-python=boost_python-mt python setup.py install".
You could probably append '--with-boost-python=boost_python-mt' to extra_compile_args inside setup.py, to achieve the same goal.
Furthermore, you could install pgmagick through pip in managed envs. Refs http://rohanradio.com/blog/2011/12/02/installing-pgmagick-on-os-x/
Note that as of July 2014 the boost Python library is a separate homebrew package called boost-python.
5254f8f510fb30484f8fac8be3d38e388a4392e2
Author: Tim D. Smith <git#tim-smith.us>
Date: Sat Jul 19 15:37:25 2014 -0700
Split out Boost.Python
You need to install it separately to get the libboost_python shared library.
Does setting DYLD_FALLBACK_LIBRARY_PATH=/usr/local/lib in the environment help before the build
e.g
$ export DYLD_FALLBACK_LIBRARY_PATH=/usr/local/lib
$ hg clone https://bitbucket.org/hhatto/pgmagick/src
$ cd pgmagick
$ python setup.py build
I've submitted a pull request to homebrew to build Boost with both mt and non mt (threaded and thread unsafe) binaries which are required to build pgmagick.
Turns out this is a rather common problem, until the patch is accepted, you can check out or use my formula for Boost to build pgmagick.
Related
I am trying to build the boost python library on my ubuntu. However, when I execute
./b2 --with-python
It always returns me errors related to
./boost/python/detail/wrap_python.hpp:57:11: fatal error: pyconfig.h: No such file or directory
# include <pyconfig.h>
^~~~~~~~~~~~
I tried to look up online, e.g., https://github.com/boostorg/build/issues/289
Follow their suggestion I check my "project-config.jam"
And I found
# Python configuration
import python ;
if ! [ python.configured ]
{
using python : 3.7 : /home/lowlimb/anaconda3 :/home/lowlimb/anaconda3/include/python3.7m;
}
Which is correct, thus I really don't know how to fix this issue.
Can anyone provide me some advice?
In addition to installing the python dev libs as suggested by the other answers, you can specify the python path directly:
CPLUS_INCLUDE_PATH=/usr/include/python3.7 make
Or in your case something like:
CPLUS_INCLUDE_PATH=/home/lowlimb/anaconda3/include/python3.7 ./b2
This worked for me when compiling a projects using Boost Python where I got the same error.
pyconfig.h is installed with sudo apt install python-dev
To build with a specific python version, you can do
./bootstrap.sh --with-python=<path to python>
e.g.
./bootstrap.sh --with-python=python3
to use your system's python3 or
./bootstrap.sh --with-python=$VIRTUAL_ENV/bin/python
to use the python from your virtual environment.
In order to build Boost-Python or more generally, use Python from C/C++, you need the Python development files:
$ sudo apt install python3.7-dev
I'm doing:
$ brew install subversion --with-python
Yet, homebrew reports:
Warning: subversion: this formula has no --with-python option so it will be ignored!
It goes on to install subversion, as that was only a warning, but I need the Python bindings too.
I tried --with-python in other positions, but it does not make any difference.
Here's all the output:
Warning: subversion: this formula has no --with-python option so it will be ignored!
==> Downloading https://homebrew.bintray.com/bottles/subversion-1.10.2.high_sierra.bottle.tar.gz
Already downloaded: /Users/paul/Library/Caches/Homebrew/downloads/cd34819a835db41e326680b8e94b4343ee0d98f68456b42c03fd1895c77b65c7--subversion-1.10.2.high_sierra.bottle.tar.gz
==> Pouring subversion-1.10.2.high_sierra.bottle.tar.gz
==> Caveats
svntools have been installed to:
/usr/local/opt/subversion/libexec
The perl bindings are located in various subdirectories of:
/usr/local/opt/subversion/lib/perl5
If you wish to use the Ruby bindings you may need to add:
/usr/local/lib/ruby
to your RUBYLIB.
Bash completion has been installed to:
/usr/local/etc/bash_completion.d
==> Summary
🍺 /usr/local/Cellar/subversion/1.10.2: 244 files, 30.4MB
Other info: I'm on macOS 10.13.6. Homebrew was upgraded today (no upgrades pending). There's a info page https://formulae.brew.sh/formula/subversion that suggests that --with-python is a real option, but that's not something the install command agrees with. At least on my computer. Swig is install on my mac (v3.0.12) via brew.
https://formulae.brew.sh/formula/subversion is out of date. The --with-python argument is not supported because the formula does the Python steps by default now.
I have created a virtual environment without the system packages with python's virtualenv in Ubuntu and installed m2crypto, but when I execute a shell and I try to import M2Crypto i get the following error:
ImportError: /home/imediava/.virtualenvs/myenv/local/lib/python2.7/site-
packages/M2Crypto/__m2crypto.so: undefined symbol: SSLv2_method
From outside the environment I run into the same problem unless from ubuntu I install python-m2crypto with apt-get. I know that I could create the environment with the system packages but I would prefer not to do it.
Is there anyway that I could create a virtual environment without the system packages and then install m2crypto with pip without running into the SSLv2_method?
There seems to be a regression bug from an earlier version of M2Crypto.
After placing M2Crypto's source in your virtualenv, you can try to patch it with the diff code below.
You do this by downloading the source code, untar it via:
tar -xzf M2Crypto-0.21.1.tar.gz
This should create the directory M2Crypto-0.21.1 which will contain the SWIG directory
In SWIG you'll find _ssl.i, which is the file to be patched. In the same directory create a file called _ssl.i.patch for example using the nano editor and paste the complete diff code listed below into it.
Next issue the patch _ssl.i _ssl.i.patch command to merge the patch into the code. (Afterwards you may remove the patch file if you want.)
Finally issue the commands:
python setup.py build
followed by:
python setup.py install
to install manually.
diff code:
--- SWIG/_ssl.i 2011-01-15 20:10:06.000000000 +0100
+++ SWIG/_ssl.i 2012-06-17 17:39:05.292769292 +0200
## -48,8 +48,10 ##
%rename(ssl_get_alert_desc_v) SSL_alert_desc_string_long;
extern const char *SSL_alert_desc_string_long(int);
+#ifndef OPENSSL_NO_SSL2
%rename(sslv2_method) SSLv2_method;
extern SSL_METHOD *SSLv2_method(void);
+#endif
%rename(sslv3_method) SSLv3_method;
extern SSL_METHOD *SSLv3_method(void);
%rename(sslv23_method) SSLv23_method;
You can install this lib in your global environment and then just copy from your global site-packages to virtualenv.
M2Crypto 0.22.3 (the current version in pypi) fixes this problem, so the simplest solution is now simply:
pip install --upgrade M2Crypto
M2Crypto 0.22.3 has been released from martinpaljak's github repository, rather than from the original M2Crypto repository.
I had the same problem with the current release (M2Crypto-0.22.5). The latest RC build worked for me.
pip install M2Crypto==0.22.6rc4
There is a patch slated for 0.26.1.
In the meantime, you can clone the repo, apply the patch, and install from source.
git clone https://gitlab.com/m2crypto/m2crypto.git
(
cd m2crypto
git checkout 0.25.1
curl 'https://gitlab.com/m2crypto/m2crypto/merge_requests/117.diff' | git apply -v
)
pip install -U m2crypto
I am setting up Python and Django on os X 10.7 from a virgin install and Xcode 4.3.
I tried using the default install of Python:
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/
I normally use a Python based package manager called easy_install.
Easy_install seems to not be able to find the compiler.
EDIT: When I tried to install MySQL-python I got this error:
$ sudo easy_install MySQL-python
Password:
Searching for MySQL-python
Reading http://pypi.python.org/simple/MySQL-python/
Reading http://sourceforge.net/projects/mysql-python/
Reading http://sourceforge.net/projects/mysql-python
Best match: MySQL-python 1.2.3
Downloading http://download.sourceforge.net/sourceforge/mysql-python/MySQL-python-1.2.3.tar.gz
Processing MySQL-python-1.2.3.tar.gz
Running MySQL-python-1.2.3/setup.py -q bdist_egg --dist-dir /tmp/easy_install-P9H9WX/MySQL-python-1.2.3/egg-dist-tmp-rRTfZL
warning: no files found matching 'MANIFEST'
warning: no files found matching 'ChangeLog'
warning: no files found matching 'GPL'
unable to execute llvm-gcc-4.2: No such file or directory
error: Setup script exited with error: command 'llvm-gcc-4.2' failed with exit status 1
error: Setup script exited with error: command 'llvm-gcc-4.2' failed with exit status 1
Apparently, the system attempts to use the same compiler used to compile the installed Python framework.
For some reason Apple didn't include llvm-gcc-4.2.
Xcode 4.1 used GCC, but with Xcode 4.3 that seems to have changed.
From what I can gather, Apple wants to use Clang as the compiler vs GCC.
So I added to .bash_profile:
cc=clang
I decided I would just recompile Python with clang but first, I needed to install readline.
Fail:
Wed Feb 22 16:04:59 ~/Downloads/readline-6.2
$ ./configure
checking build system type... i386-apple-darwin11.3.0
checking host system type... i386-apple-darwin11.3.0
Beginning configuration for readline-6.2 for i386-apple-darwin11.3.0
checking whether make sets $(MAKE)... no
checking for gcc... no
checking for cc... no
checking for cl.exe... no
configure: error: in `/Users/Bryan/Downloads/readline-6.2':
configure: error: no acceptable C compiler found in $PATH
See `config.log' for more details.
What the easiest way to install Django on Lion 10.7?
Did you install the command-line tools with Xcode 4.3? They are not installed by default. You can install them by going to the Downloads pane in Xcode 4.3's preferences.
Making it way too hard:
First, make sure you install Xcode (available for free in the Mac App Store). It includes all the build tools that might be necessary to compile certain Python packages.
To get easy_install just download setuptools and follow the instructions for installing on Mac OS X at that link.
Once that's done, you can easy_install virtualenv to get a nice segregated environment to work in.
For the MySQL issue you have to edit the site.cfgfile:
mysql_config = /usr/local/mysql/bin/mysql_config
And then:
$ python setup.py build
$ sudo python setup.py install
Try updating XCode and reinstall all global site-packages. You may also want to try pip instead of easy_install.
You can also try to compile with
export ARCHFLAGS='-arch i386 -arch x86_64'
This solved many of my problems in the past when upgrading OSX versions.
I'm getting errors when running
$ brew install postgresql
==> Downloading http://ftp.postgresql.org/pub/source/v9.1.2/postgresql-9.1.2.tar.bz2
File already downloaded in /Users/neil/Library/Caches/Homebrew
Warning: Detected a framework Python that does not have 64-bit support in:
/Library/Frameworks/Python.framework/Versions/Current/Python
e configure script seems to prefer this version of Python over any others,
you may experience linker problems as described in:
http://osdir.com/ml/pgsql-general/2009-09/msg00160.html
fix this issue, you may need to either delete the version of Python
own above, or move it out of the way before brewing PostgreSQL.
te that a framework Python in /Library/Frameworks/Python.framework is
e "MacPython" version, and not the system-provided version which is in:
/System/Library/Frameworks/Python.framework
==> ./configure --disable-debug --prefix=/usr/local/Cellar/postgresql/9.1.2 --datadir=/usr/local/Cellar/postgresql/9.1.2/shar
^C
Here's where python is located.
$ which python
/usr/local/bin/python
I modified my ~/.zshrc PATH from
export PATH=/Library/Frameworks/Python.framework/Versions/2.7/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/X11/bin
to
export PATH=/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/X11/bin
And although I'm getting python 64-bit errors, my version of python is 64-bit according to this SO post:
$ python -c 'import struct;print( 8 * struct.calcsize("P"))'
64
The problem pointed out in the referenced mailing list post is that the configure step isn't impacted by the PATH here. There's a whole other mechanism used to find things to link against; see Where do I set DYLD_LIBRARY_PATH on Mac OS X for a quick intro. You could try the suggested workaround given by the brew script--rename /Library/Frameworks/Python.framework/Versions/Current/Python to something else to get it out of the linker's search path, repeat the brew install, then put it back.
If you don't need Python bindings in your PostgreSQL, you can also just install it without Python bindings using brew install postgresql --no-python.
This command is installing the server, not the python bindings. Is that what you want? There is a installer for osx that will install the server for you.
Once you have done that, you can install the psycopg2 bindings directly from source.