I am trying to install ViZDoom on Ubuntu system. I am following the steps given the following link https://github.com/mwydmuch/ViZDoom/blob/master/doc/Building.md.
As shown below:
sudo apt-get install build-essential zlib1g-dev libsdl2-dev libjpeg-dev \
nasm tar libbz2-dev libgtk2.0-dev cmake git libfluidsynth-dev libgme-dev \
libopenal-dev timidity libwildmidi-dev unzip
sudo apt-get install libboost-all-dev
sudo apt-get install python3-dev python3-pip
pip3 install numpy
sudo apt-get install julia
julia
julia> using Pkg
julia> Pkg.add("CxxWrap")
pip install git+https://github.com/mwydmuch/ViZDoom.git
mkdir build
cd build
cmake .. -DCMAKE_BUILD_TYPE=Release -DBUILD_PYTHON=ON -DBUILD_JAVA=ON -DBUILD_LUA=ON -DBUILD_JULIA=ON
make
However, when I do this
cmake .. -DCMAKE_BUILD_TYPE=Release -DBUILD_PYTHON3=ON -DBUILD_JAVA=ON -DBUILD_LUA=ON -DBUILD_JULIA=ON
I am getting the following error:
-- Boost version: 1.65.1
-- Found the following Boost libraries:
-- filesystem
-- thread
-- system
-- date_time
-- chrono
-- regex
-- iostreams
-- atomic
CMake Deprecation Warning at cmake_modules/CreateLaunchers.cmake:48 (cmake_policy):
The OLD behavior for policy CMP0026 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
Call Stack (most recent call first):
src/vizdoom/CMakeLists.txt:13 (include)
-- Could NOT find GME (missing: GME_INCLUDE_DIR)
-- Using system zlib
-- Using system jpeg library
-- Using system bzip2 library
-- Using internal gme library
-- /usr/include
-- /usr/include
-- /home/tie/ViZDoom/src/vizdoom/lzma/C
-- Could not find FMOD include files
-- Could NOT find SndFile (missing: SNDFILE_LIBRARY SNDFILE_INCLUDE_DIR)
-- Could NOT find MPG123 (missing: MPG123_LIBRARIES MPG123_INCLUDE_DIR)
-- Selected assembler: /usr/bin/as
-- Boost version: 1.65.1
-- Found the following Boost libraries:
-- thread
-- system
-- date_time
-- chrono
-- atomic
-- Fluid synth libs: /usr/lib/x86_64-linux-gnu/libfluidsynth.so
-- pybind11 v2.8.1
CMake Error at src/lib_julia/CMakeLists.txt:1 (find_package):
By not providing "FindJlCxx.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "JlCxx", but
CMake did not find one.
Could not find a package configuration file provided by "JlCxx" with any of
the following names:
JlCxxConfig.cmake
jlcxx-config.cmake
Add the installation prefix of "JlCxx" to CMAKE_PREFIX_PATH or set
"JlCxx_DIR" to a directory containing one of the above files. If "JlCxx"
provides a separate development package or SDK, be sure it has been
installed.
-- Configuring incomplete, errors occurred!
See also "/home/tie/ViZDoom/build/CMakeFiles/CMakeOutput.log".
See also "/home/tie/ViZDoom/build/CMakeFiles/CMakeError.log".
I also install Julia successfully：
I think that there is CMake error or some version mismatch error but being new to it, I am unable to resolve it.
Related
Upon attempting to compile python 3.7 I hit Could not import runpy module:
jeremyr#b88:$ wget https://www.python.org/ftp/python/3.7.3/Python-3.7.3.tar.xz
....
jeremyr#b88:~/Python-3.7.3$ ./configure --enable-optimizations
jeremyr#b88:~/Python-3.7.3$ make clean
jeremyr#b88:~/Python-3.7.3$ make -j32
....
gcc -pthread -Xlinker -export-dynamic -o Programs/_testembed Programs/_testembed.o libpython3.7m.a -lcrypt -lpthread -ldl -lutil -lm
./python -E -S -m sysconfig --generate-posix-vars ;\
if test $? -ne 0 ; then \
echo "generate-posix-vars failed" ; \
rm -f ./pybuilddir.txt ; \
exit 1 ; \
fi
Could not import runpy module
Traceback (most recent call last):
File "/home/jeremyr/Python-3.7.3/Lib/runpy.py", line 15, in <module>
import importlib.util
File "/home/jeremyr/Python-3.7.3/Lib/importlib/util.py", line 14, in <module>
from contextlib import contextmanager
File "/home/jeremyr/Python-3.7.3/Lib/contextlib.py", line 4, in <module>
import _collections_abc
SystemError: <built-in function compile> returned NULL without setting an error
generate-posix-vars failed
Makefile:603: recipe for target 'pybuilddir.txt' failed
make[1]: *** [pybuilddir.txt] Error 1
make[1]: Leaving directory '/home/jeremyr/Python-3.7.3'
Makefile:531: recipe for target 'profile-opt' failed
make: *** [profile-opt] Error 2
jeremyr#88:~/Python-3.7.3$ lsb_release -a
No LSB modules are available.
Distributor ID: Debian
Description: Debian GNU/Linux 8.11 (jessie)
Release: 8.11
Codename: jessie
jeremyr#88:~/Python-3.7.3$ gcc --version
gcc (Debian 4.9.2-10+deb8u2) 4.9.2
Copyright (C) 2014 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
jeremyr#88:~/Python-3.7.3$ sudo apt upgrade gcc
Reading package lists... Done
Building dependency tree
Reading state information... Done
Calculating upgrade... gcc is already the newest version.
jeremyr#b88:~/Python-3.7.3$ echo $PYTHONPATH
Any advice on how to overcome this and install python3.7 appreciated.
Edit - the solution listed below seems to work for various other python versions, so I changed title to python 3.x from 3.7
It seems the enable-optimizations was the problem,
jeremyr#b88:~/Python-3.7.3$ ./configure
jeremyr#b88:~/Python-3.7.3$ make clean
takes care of it in my case.
In case others come across this question: I encountered the same problem on Centos 7. I also had --enable-optimizations but didn't want to remove that flag. Updating my build dependencies and then re-running solved the problem. To do that I ran:
sudo yum groupinstall "Development Tools" -y
In case the yum group is not available, you can also install the pacakges individually using:
sudo yum install bison byacc cscope ctags cvs diffstat doxygen flex gcc gcc-c++ gcc-gfortran gettext git indent intltool libtool patch patchutils rcs redhat-rpm-config rpm-build subversion swig systemtap
For whomever MicGer's answer didn't work and would like to retain --enable-optimizations, check your gcc version. The error was solved for me on gcc 8.3.0.
For me, CentOS 7, compiling Python3.9, the fix was updating the gcc and related packages.
Removing --enable-optimizations didn't solved the issue here, neither upgrading GCC from gcc-7.5.0 to gcc-8.2.1 trying building Python 3.6.13 on opensuse-15.2.
Here for some reason the build is picking a local python installation, so before calling make I have updated the PATH env to include the build directory (were python file is generated), for instance: export PATH=$(pwd):$PATH
Platform:macOS High Sierra
Hello,
I tried to use the method Building from source to install RDkit, there is something wrong when I entered cmake ..,the terminal shows that
CMake Warning at
/usr/local/Cellar/cmake/3.12.0/share/cmake/Modules/FindBoost.cmake:1723 (message):
No header defined for python-py36; skipping header check
Call Stack (most recent call first):
CMakeLists.txt:202 (find_package)
CMake Error at /usr/local/Cellar/cmake/3.12.0/share/cmake/Modules/FindBoost.cmake:2044 (message):
Unable to find the requested Boost libraries.
Boost version: 1.67.0
Boost include path: /usr/local/include
Could not find the following Boost libraries:
boost_python
No Boost libraries were found. You may need to set BOOST_LIBRARYDIR to the
directory containing Boost libraries or BOOST_ROOT to the location of
Boost.
But I have added /usr/local/Cellar/boost/lib and /usr/local/Cellar/boost-python/lib to the ~/.bash_profile.
My ~/.bash_profile is written like this:
export RDBASE=/Users/wangzhicheng/Software/RDkit/rdkit-Release_2018_03_3
export PYTHONPATH=$RDBASE
export DYLD_LIBRARY_PATH=$RDBASE/lib:/usr/local/Cellar/boost/1.67.0_1/lib:/usr/local/Cellar/boost-python/1.67.0/lib:/usr/local/lib:/usr/local/Cellar/boost-python3/1.67.0_1/lib
export PATH="/Users/wangzhicheng/anaconda3/bin:$PATH"
By the way, I had already installed boost, boost-python3 by homebrew.
So where is the problem?
I think I've found the solution to this problem.
The reason for the problem cmake want to find libboost_python3.dylib in your library folder but in fact this file is called libboost_python3x.dylib(x is depended on your python version), so you just need to type following command in your terminal:
cd /usr/local/lib
sudo ln -s libboost_python3x.dylib libboost_python3.dylib
and you can solve this error!
I'm trying to install openCV in python
I have the same problem as mentioned in those several github and stackoverflow pages but I'm still stuck:
github openCV issue #8382
github openCV issue #6027
github openCV issue #6066
Here is an ouput of the terminal:
mymacs-MacBook-Pro:build mymac$ cmake -D CMAKE_BUILD_TYPE=RELEASE \
> -D CMAKE_INSTALL_PREFIX=/usr/local \
> -D INSTALL_C_EXAMPLES=OFF \
> -D INSTALL_PYTHON_EXAMPLES=ON \
> -D OPENCV_EXTRA_MODULES_PATH=~/opencv_contrib/modules \
> -D BUILD_EXAMPLES=ON ..
CMake Deprecation Warning at CMakeLists.txt:72 (cmake_policy):
The OLD behavior for policy CMP0022 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
CMake Deprecation Warning at CMakeLists.txt:77 (cmake_policy):
The OLD behavior for policy CMP0026 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
CMake Deprecation Warning at CMakeLists.txt:82 (cmake_policy):
The OLD behavior for policy CMP0042 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
-- Could NOT find GDAL (missing: GDAL_LIBRARY GDAL_INCLUDE_DIR)
-- Checking for module 'gstreamer-base-1.0'
-- No package 'gstreamer-base-1.0' found
-- Checking for module 'gstreamer-video-1.0'
-- No package 'gstreamer-video-1.0' found
-- Checking for module 'gstreamer-app-1.0'
-- No package 'gstreamer-app-1.0' found
-- Checking for module 'gstreamer-riff-1.0'
-- No package 'gstreamer-riff-1.0' found
-- Checking for module 'gstreamer-pbutils-1.0'
-- No package 'gstreamer-pbutils-1.0' found
-- Checking for module 'gstreamer-base-0.10'
-- No package 'gstreamer-base-0.10' found
-- Checking for module 'gstreamer-video-0.10'
-- No package 'gstreamer-video-0.10' found
-- Checking for module 'gstreamer-app-0.10'
-- No package 'gstreamer-app-0.10' found
-- Checking for module 'gstreamer-riff-0.10'
-- No package 'gstreamer-riff-0.10' found
-- Checking for module 'gstreamer-pbutils-0.10'
-- No package 'gstreamer-pbutils-0.10' found
-- Checking for module 'libv4l1'
-- No package 'libv4l1' found
-- Checking for module 'libv4l2'
-- No package 'libv4l2' found
-- Looking for linux/videodev.h
-- Looking for linux/videodev.h - not found
-- Looking for linux/videodev2.h
-- Looking for linux/videodev2.h - not found
-- Looking for sys/videoio.h
-- Looking for sys/videoio.h - not found
-- Checking for module 'libgphoto2'
-- No package 'libgphoto2' found
-- Found PythonInterp: /usr/local/bin/python2.7 (found suitable version "2.7.14", minimum required is "2.7")
-- Found PythonLibs: /usr/local/Cellar/python/2.7.10/Frameworks/Python.framework/Versions/2.7/bin (found suitable exact version "2.7.14")
-- Found PythonInterp: /Users/mymac/.virtualenvs/cv/bin/python (found suitable version "3.5.4", minimum required is "3.4")
-- Found PythonLibs: /usr/local/Cellar/python3/3.5.2_3/Frameworks/Python.framework/Versions/3.5/lib/python3.5/config-3.5m/libpython3.5.dylib (Required is exact version "3.5.4")
-- Could NOT find Matlab (missing: MATLAB_MEX_SCRIPT MATLAB_INCLUDE_DIRS MATLAB_ROOT_DIR MATLAB_LIBRARIES MATLAB_LIBRARY_DIRS MATLAB_MEXEXT MATLAB_ARCH MATLAB_BIN)
-- VTK is not found. Please set -DVTK_DIR in CMake to VTK build directory, or to VTK install subdirectory with VTKConfig.cmake file
-- Caffe: NO
-- Protobuf: NO
-- Glog: NO
CMake Error at /Users/mymac/opencv_contrib/modules/datasets/CMakeLists.txt:7 (ocv_append_source_files_cxx_compiler_options):
Unknown CMake command "ocv_append_source_files_cxx_compiler_options".
-- Configuring incomplete, errors occurred!
See also "/Users/mymac/opencv/build/CMakeFiles/CMakeOutput.log".
See also "/Users/mymac/opencv/build/CMakeFiles/CMakeError.log".
mymacs-MacBook-Pro:build mymac$
As mentioned on this here I tried checkout the same version for opencv_contrib that I did for opencv by running the following command:
cd ~
cd opencv
git checkout 3.0.0
cd ~
cd opencv_contrib
git checkout 3.0.0
It worked
I then ran the command make -j4
but the two following error messages appeared:
In file included from /Users/mymac/opencv_contrib/modules/cvv/src/gui/main_call_window.cpp:1:
In file included from /Users/mymac/opencv_contrib/modules/cvv/src/gui/main_call_window.hpp:9:
In file included from /Users/mymac/opencv_contrib/modules/cvv/src/gui/overview_panel.hpp:12:/Users/mymac/opencv_contrib/modules/cvv/src/gui/../stfl/stfl_engine.hpp:1056:30: error: use 'template' keyword to treat
'value' as a dependent template name
return settings.value(key).value<QStringList>();
^
template
In file included from /Users/mymac/opencv_contrib/modules/cvv/src/controller/view_controller.cpp:12:
In file included from /Users/mymac/opencv_contrib/modules/cvv/src/controller/../gui/overview_panel.hpp:12: /Users/mymac/opencv_contrib/modules/cvv/src/controller/../gui/../stfl/stfl_engine.hpp:1056:30: error: use 'template'
keyword to treat 'value' as a dependent template name
return settings.value(key).value<QStringList>();
^
template
For this i created a new question here
So I've installed Boost via brew, similarly installed with cmake and python:
brew install boost --with-python3
brew install boost-python
brew install cmake
I'm currently using miniconda3 (python3.6) and am trying to install Dlib. So far I can install dlib fine, but when it comes to python setup, it fails. Dlib can be obtained by cloning the repo dlib_repo
Here I do python setup.py install, Getting the following errors
-- Detecting CXX compile features - done
CMake Warning at /usr/local/Cellar/cmake/3.7.2/share/cmake/Modules/FindBoost.cmake:1518 (message):
No header defined for python-py34; skipping header check
Call Stack (most recent call first):
/Users/userx/dlib/dlib/cmake_utils/add_python_module:61 (FIND_PACKAGE)
CMakeLists.txt:6 (include)
-- Could NOT find Boost
CMake Warning at /usr/local/Cellar/cmake/3.7.2/share/cmake/Modules/FindBoost.cmake:1518 (message):
No header defined for python-py35; skipping header check
Call Stack (most recent call first):
/Users/userx/dlib/dlib/cmake_utils/add_python_module:63 (FIND_PACKAGE)
CMakeLists.txt:6 (include)
-- Could NOT find Boost
CMake Warning at /usr/local/Cellar/cmake/3.7.2/share/cmake/Modules/FindBoost.cmake:1518 (message):
No header defined for python3; skipping header check
Call Stack (most recent call first):
/Users/userx/dlib/dlib/cmake_utils/add_python_module:66 (FIND_PACKAGE)
CMakeLists.txt:6 (include)
-- Boost version: 1.61.0
-- Found the following Boost libraries:
-- python3
-- Found PythonLibs: /Users/userx/miniconda3/lib/libpython3.5.dylib (found suitable version "3.5.2", minimum required is "3.4")
-- USING BOOST_LIBS: /Users/userx/miniconda3/lib/libboost_python3.dylib
-- USING PYTHON_LIBS: /Users/userx/miniconda3/lib/libpython3.5.dylib
...
...
...
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make[2]: *** [dlib_build/CMakeFiles/dlib.dir/gui_widgets/fonts.cpp.o] Error 1
make[1]: *** [dlib_build/CMakeFiles/dlib.dir/all] Error 2
make: *** [all] Error 2
error: cmake build failed!
So here, I felt cmake couldn't find the boost variables, so I added these to my .bashrc and restarted my shell.
export BOOST_ROOT="/usr/local/Cellar/boost/1.63.0"
export BOOST_INCLUDE="/usr/local/Cellar/boost/1.63.0/include"
export BOOST_LIBDIR="/usr/local/Cellar/boost/1.63.0/lib"
Note these paths were found them via brew info and checked them to ensure correctness.
I'm using a macbook with Sierra OS - as I know Sierra has changed the way a lot of builds happen.
I have also tried to remove boost and download from the site and build directly, but same problem persists.
Any help much appreciated
It might be caused by the CMAKE_PREFIX_PATH setting.
I met the same problem and I solved it by this sequence:
First I install the boost using this:
brew install boost-python --with-python3
then I found the BOOST Not Found error when running the following commands to install the dlib 19.7.0:
pip install dlib --upgrade
So I edit the Bash Profile with following commands:
nano ~/.bash*le
and add the following line into this file:
export CMAKE_PREFIX_PATH="/usr/local:/usr/local/Cellar/boost/1.65.1:$PATH"
Notice
I am using the boost 1.65.1, which is installed at /usr/local/Cellar/boost/1.65.1, you might change it to the location that you install boost with brew.
after this step, I run pip install dlib --upgrade again on both python2.7.14 and 3.6.1 and 3.6.3, everything goes on the right way now.
I did the same in my system, except for one difference:
python3 setup.py install
Instead of
python setup.py install
And I don't see that error.
I have a virtual Linux box with Debian 7.1 where I need a Python 2.4.6 to reanimate an old Zope installation (in order to update it to Plone 4, of course).
I definitely need ssl support, and when I'm compiling, I want readline as well, of course. Finally, of course I need zlib, otherwise ez_setup.py etc. won't work; I'm having a hard time to get zlib included.
I downloaded the tarball of Python 2.4.6, enabled ssl in Modules/Setup.dist:
SSL=/usr/local/ssl
_ssl _ssl.c \
-DUSE_SSL -I$(SSL)/include -I$(SSL)/include/openssl \
-L$(SSL)/lib -lssl -lcrypto
... and called:
./configure --prefix=/my/dest/dir --with-zlib
make
make gives me some warnings at the end about crypt and nis, but make install doesn't yield any errors. However, the resulting Python features both readline and ssl support, but no zlib; thus, I can't use ez_setup.py to get setuptools/pip etc.
I tried both to uncomment and re-exclude the line
zlib zlibmodule.c -I$(prefix)/include -L$(exec_prefix)/lib -lz
from Setup.dist.
Some system packages which are installed:
zlib1g-dev
lib32z1-dev
libreadline-gplv2-dev
Is there anything else I have missed?
Update, after heaving read https://stackoverflow.com/a/4047583/1051649:
I did
$ sudo apt-get install zlib1g zlib1g-dev libncurses5-dev libreadline6-dev ncurses-doc
$ python setup.py clean
$ ./configure --with-ssl --with-zlib --prefix=...
$ make
$ sudo make install
The resulting interpreter was not able to execute distribute_setup.py.
I found the solution here:
I changed setup.py, looking for the first assignment to the lib_dirs variable, changing it like so:
lib_dirs = self.compiler.library_dirs + [
'/lib64', '/usr/lib64',
'/lib', '/usr/lib',
'/usr/lib/x86_64-linux-gnu', # added
'/usr/lib/i386-linux-gnu', # added
]
Then I repeated the whole thing, starting with setup.py clean, and it worked.