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"error: command 'gcc' failed with exit status 1" when trying to install python-language-server [duplicate]

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fatal error: Python.h: No such file or directory
(35 answers)
Closed 2 years ago.
I've below pip installed in my system
$ pip --version
pip 19.3.1 from /usr/lib/python3.8/site-packages/pip (python 3.8)
python version installed in my system is -
$ python --version
Python 3.8.3
I'm trying to install python-language-server and encountered below error -
Running setup.py install for ujson ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-yoqmgayp/ujson/setup.py'"'"'; file='"'"'/tmp/pip-install-yoqmgayp/ujson/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-h4azsb93/install-record.txt --single-version-externally-managed --compile
cwd: /tmp/pip-install-yoqmgayp/ujson/
Complete output (16 lines):
Warning: 'classifiers' should be a list, got type 'filter'
running install
running build
running build_ext
building 'ujson' extension
creating build
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/python
creating build/temp.linux-x86_64-3.8/lib
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -I./python -I./lib -I/usr/include/python3.8 -c ./python/ujson.c -o build/temp.linux-x86_64-3.8/./python/ujson.o -D_GNU_SOURCE
In file included from ./python/ujson.c:39:
./python/py_defines.h:39:10: fatal error: Python.h: No such file or directory
39 | #include
| ^~~~~~~~~~
compilation terminated.
error: command 'gcc' failed with exit status 1
ERROR: Command errored out with exit status 1: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-yoqmgayp/ujson/setup.py'"'"'; file='"'"'/tmp/pip-install-yoqmgayp/ujson/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-h4azsb93/install-record.txt --single-version-externally-managed --compile Check the logs for full command output.
Below is my OS details -
$ lsb_release -a
LSB Version: :core-4.1-amd64:core-4.1-noarch
Distributor ID: Fedora
Description: Fedora release 32 (Thirty Two)
Release: 32
Codename: ThirtyTwo
How can I fix this error?

If you read the word message, it tells you what is wrong
./python/py_defines.h:39:10: fatal error: Python.h: No such file or directory
It says it can't find the header file. Ask dnf about what provides it:
sudo dnf provides '*/Python.h'
Then install that package (sudo dnf install ...) and retry your original command.

Error doing pip3 install tslearn - command 'x86_64-linux-gnu-gcc' failed with exit status 1

when I try to pip3 install tslearn on my ElementaryOS (similar to ubuntu) machine I get this error
building 'tslearn.cycc' extension
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/tslearn
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/bruno/.local/lib/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c tslearn/cycc.c -o build/temp.linux-x86_64-3.6/tslearn/cycc.o
/usr/lib/gcc/x86_64-linux-gnu/7/cc1: error while loading shared libraries: libisl.so.19: cannot open shared object file: No such file or directory
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Command "/usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-5p7o5dn8/tslearn/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-tqrjth8y-record/install-record.txt --single-version-externally-managed --compile --user --prefix=" failed with error code 1 in /tmp/pip-build-5p7o5dn8/tslearn/
I've tried the solutions on this thread but nothing works. Any ideas? Thanks

In the end I fixed it by installing libisl, then going into the install location, locating libisl.so, and creating a symlink to point libisl.so.19 to it - by doing ln -s libisl.so libisl.so.19

GDAL installation error "error: command 'x86_64-linux-gnu-gcc' failed with exit status 1"

I'm trying to install GDAL with python.But it failed with error.
The command I use is pip install GDAL.
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/usr/include/python2.7 -I/usr/local/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -c extensions/gdal_wrap.cpp -o build/temp.linux-x86_64-2.7/extensions/gdal_wrap.o -std=c++11 -I/usr/include/gdal
extensions/gdal_wrap.cpp:3177:27: fatal error: cpl_vsi_error.h: No such file or directory
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
and
----------------------------------------
Failed building wheel for GDAL
Running setup.py clean for GDAL
Failed to build GDAL
Installing collected packages: GDAL
Running setup.py install for GDAL ... error
Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-_spRXy/GDAL/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-NxpUaO-record/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.7
copying gdal.py -> build/lib.linux-x86_64-2.7
...
creating build/temp.linux-x86_64-2.7/extensions
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/usr/include/python2.7 -I/usr/local/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -c extensions/gdal_wrap.cpp -o build/temp.linux-x86_64-2.7/extensions/gdal_wrap.o -std=c++11 -I/usr/include/gdal
extensions/gdal_wrap.cpp:3177:27: fatal error: cpl_vsi_error.h: No such file or directory
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Command "/usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-_spRXy/GDAL/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-NxpUaO-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-_spRXy/GDAL/
I've already tried sudo apt-get install build-essential, but stil the same error occurs.

Here is the answer I found that worked:
"you might have to change the gdal version to the version installed on your host. So I had to do this since I have gdal==1.11.2 on my host:"
pip install gdal==1.11.2 --global-option=build_ext --global-option="-I/usr/include/gdal/"
Where the 1.11.2 should be updated to your gdal_version, which can be found in the line # define GDAL_RELEASE_NAME of the /usr/include/gdal/gdal_version.h file (at least on my system running Kubuntu).
Link to original github page with this answer from Basaks, mentioned in the comment above by Craicerjack.

pip install module error

hello guys i tried to install a python module called gmpy2 with pip install gmpy2 but error occurs during wheel building
running install
running build
running build_ext
building 'gmpy2' extension
creating build
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/src
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-
prototypes -g -fdebug-prefix-map=/build/python3.6-LpWKty/python3.6-
3.6.5~rc1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-
protector-strong -Wformat -Werror=format-security -Wdate-time -
D_FORTIFY_SOURCE=2 -fPIC -DWITHMPFR -DWITHMPC -
I/usr/include/python3.6m -c src/gmpy2.c -o build/temp.linux-x86_64-
3.6/src/gmpy2.o
In file included from src/gmpy2.c:426:0:
src/gmpy.h:252:12: fatal error: mpfr.h: No such file or directory
# include "mpfr.h"
^~~~~~~~
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
`
`
----------------------------------------
Command "/usr/bin/python3 -u -c "import setuptools,
tokenize;__file__='/tmp/pip-build-
onv0x975/gmpy2/setup.py';f=getattr(tokenize, 'open', open)
(__file__);code=f.read().replace('\r\n',
'\n');f.close();exec(compile(code, __file__, 'exec'))" install --
record /tmp/pip-izolloyr-record/install-record.txt --single-version-
externally-managed --compile" failed with error code 1 in /tmp/pip-
build-onv0x975/gmpy2/
I tried both pip and pip3

You need to download MPFR source code and compile it. See installation manual: https://gmpy2.readthedocs.io/en/latest/intro.html#installation

pip is not allowing me to install seccomplite

I tried to install seccomplite package with pip. instead I got these errors. Please help.
Collecting seccomplite
Using cached seccomplite-0.1.0a3.tar.gz
Installing collected packages: seccomplite
Running setup.py install for seccomplite ... error
Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;file='/tmp/pip-build-HRGD9U/seccomplite/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-JqYhgy-record/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_ext
building 'seccomplite' extension
creating build
creating build/temp.linux-x86_64-2.7
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DMODULE_NAME="seccomplite" -DMAJOR_VERSION="0" -DMINOR_VERSION="1" -DDEVELOP_VERSION="0a3" -DMODULE_DESCRIPTION="lightweight libseccomp2 python bridge" -I/usr/include/python2.7 -c filter.c -o build/temp.linux-x86_64-2.7/filter.o
gcc: error: /usr/lib/rpm/redhat/redhat-hardened-cc1: No such file or directory
error: command 'gcc' failed with exit status 1
----------------------------------------
Command "/usr/bin/python -u -c "import setuptools, tokenize;file='/tmp/pip-build-HRGD9U/seccomplite/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-JqYhgy-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-HRGD9U/seccomplite/