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Error doing pip3 install tslearn - command 'x86_64-linux-gnu-gcc' failed with exit status 1

when I try to pip3 install tslearn on my ElementaryOS (similar to ubuntu) machine I get this error
building 'tslearn.cycc' extension
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/tslearn
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/bruno/.local/lib/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c tslearn/cycc.c -o build/temp.linux-x86_64-3.6/tslearn/cycc.o
/usr/lib/gcc/x86_64-linux-gnu/7/cc1: error while loading shared libraries: libisl.so.19: cannot open shared object file: No such file or directory
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Command "/usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-5p7o5dn8/tslearn/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-tqrjth8y-record/install-record.txt --single-version-externally-managed --compile --user --prefix=" failed with error code 1 in /tmp/pip-build-5p7o5dn8/tslearn/
I've tried the solutions on this thread but nothing works. Any ideas? Thanks

In the end I fixed it by installing libisl, then going into the install location, locating libisl.so, and creating a symlink to point libisl.so.19 to it - by doing ln -s libisl.so libisl.so.19

Installing `dulwich` gives `error: command 'clang' failed with exit status 1`

When I try to execute pip install dulwich, I end up with a wall of red complaining about clang. Here's the last bit:
Please check your Xcode installation
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/openssl/include -I/usr/local/include -I/usr/local/opt/openssl#1.1/include -I/usr/local/opt/sqlite/include -I/Users/alaird/Developer/py3venv/include -I/usr/local/Cellar/python/3.7.4_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c dulwich/_objects.c -o build/temp.macosx-10.14-x86_64-3.7/dulwich/_objects.o
clang: warning: no such sysroot directory: '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk' [-Wmissing-sysroot]
In file included from dulwich/_objects.c:20:
/usr/local/Cellar/python/3.7.4_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m/Python.h:25:10: fatal error: 'stdio.h' file not found
#include <stdio.h>
^~~~~~~~~
1 error generated.
error: command 'clang' failed with exit status 1
----------------------------------------
ERROR: Command "/Users/alaird/Developer/py3venv/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/private/var/folders/63/r_rf7mhj14b4c42mfkkl06t8rg1b1r/T/pip-install-b9wlh7xh/dulwich/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/63/r_rf7mhj14b4c42mfkkl06t8rg1b1r/T/pip-record-_v0dq_sp/install-record.txt --single-version-externally-managed --compile --install-headers /Users/alaird/Developer/py3venv/include/site/python3.7/dulwich" failed with error code 1 in /private/var/folders/63/r_rf7mhj14b4c42mfkkl06t8rg1b1r/T/pip-install-b9wlh7xh/dulwich/
I've gone down a lot of "clang failed with exit status 1" rabbit holes on Google, problem is that's too generic. To answer a few questions:
Yes, Xcode is the latest version, and command-line tools have been installed (I'm on OS X 10.14.6, so this is now managed through app updates).
This was a previously working installation. This error began occuring after I did a make clean, which blew away my venv.
Attempting to install the latest setuptools runs in to the same error, so feels like the error pointing to Xcode/my build environment (and not dulwich) is the correct culprit.
Doing a brew update also gives me the same clang barf. I think something got hosed when I upgraded to Mojave.
Ideas?

Ah-ha!
I started looking at the warning instead of the error:
no such sysroot directory: '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk' [-Wmissing-sysroot]
And this led me to notice a SDK version number was hardcoded ... which seems stupid. So I built a symlink:
ln -s /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk
Depending on your system configuration, you may need to build a different symlink (there was also a MacOSX10.15.sdk folder).
Then it worked! No issues with pip (including installing dulwich and pycrypto), no issues with brew, and all is well with my development environment again!
I also did:
export CFLAGS="-isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk"
However, I don't believe that was what did it, since after starting a new session all still worked. So it was probably the symlink above that resolved it. Hope this helps others!

pip install module error

hello guys i tried to install a python module called gmpy2 with pip install gmpy2 but error occurs during wheel building
running install
running build
running build_ext
building 'gmpy2' extension
creating build
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/src
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-
prototypes -g -fdebug-prefix-map=/build/python3.6-LpWKty/python3.6-
3.6.5~rc1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-
protector-strong -Wformat -Werror=format-security -Wdate-time -
D_FORTIFY_SOURCE=2 -fPIC -DWITHMPFR -DWITHMPC -
I/usr/include/python3.6m -c src/gmpy2.c -o build/temp.linux-x86_64-
3.6/src/gmpy2.o
In file included from src/gmpy2.c:426:0:
src/gmpy.h:252:12: fatal error: mpfr.h: No such file or directory
# include "mpfr.h"
^~~~~~~~
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
`
`
----------------------------------------
Command "/usr/bin/python3 -u -c "import setuptools,
tokenize;__file__='/tmp/pip-build-
onv0x975/gmpy2/setup.py';f=getattr(tokenize, 'open', open)
(__file__);code=f.read().replace('\r\n',
'\n');f.close();exec(compile(code, __file__, 'exec'))" install --
record /tmp/pip-izolloyr-record/install-record.txt --single-version-
externally-managed --compile" failed with error code 1 in /tmp/pip-
build-onv0x975/gmpy2/
I tried both pip and pip3

You need to download MPFR source code and compile it. See installation manual: https://gmpy2.readthedocs.io/en/latest/intro.html#installation

Error while installing oursql in virtualenv

When I try to install oursql under virtual environment using pip install oursql I get following error:
Collecting oursql
Using cached oursql-0.9.3.1.tar.bz2
Building wheels for collected packages: oursql
Running setup.py bdist_wheel for oursql
Complete output from command /home/raghav/janpro/release_1/venv/bin/python2 -c "import setuptools;__file__='/tmp/pip-build-ndxBoY/oursql/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpe4k7ejpip-wheel-:
cython not found, using previously-cython'd .c file.
running bdist_wheel
running build
running build_ext
warning: no usable mysql_config and no _winreg module to try; hopefully you have usable CFLAGS/LDFLAGS set.
building 'oursql' extension
creating build
creating build/temp.linux-x86_64-2.7
creating build/temp.linux-x86_64-2.7/oursqlx
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c oursqlx/oursql.c -o build/temp.linux-x86_64-2.7/oursqlx/oursql.o
oursqlx/oursql.c:4:20: fatal error: Python.h: No such file or directory
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Failed building wheel for oursql
Failed to build oursql
Installing collected packages: oursql
Running setup.py install for oursql
Complete output from command /home/raghav/janpro/release_1/venv/bin/python2 -c "import setuptools, tokenize;__file__='/tmp/pip-build-ndxBoY/oursql/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-awH5dT-record/install-record.txt --single-version-externally-managed --compile --install-headers /home/raghav/janpro/release_1/venv/include/site/python2.7/oursql:
cython not found, using previously-cython'd .c file.
running install
running build
running build_ext
warning: no usable mysql_config and no _winreg module to try; hopefully you have usable CFLAGS/LDFLAGS set.
building 'oursql' extension
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c oursqlx/oursql.c -o build/temp.linux-x86_64-2.7/oursqlx/oursql.o
oursqlx/oursql.c:4:20: fatal error: Python.h: No such file or directory
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Command "/home/raghav/janpro/release_1/venv/bin/python2 -c "import setuptools, tokenize;__file__='/tmp/pip-build-ndxBoY/oursql/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-awH5dT-record/install-record.txt --single-version-externally-managed --compile --install-headers /home/raghav/janpro/release_1/venv/include/site/python2.7/oursql" failed with error code 1 in /tmp/pip-build-ndxBoY/oursql
Then I installed MySQL C++ connectors with sudo apt-get install libmysqlcppconn-dev but still error was coming.
So, I tried sudo pip install oursql and got following output:
The directory '/home/raghav/.cache/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
The directory '/home/raghav/.cache/pip' or its parent directory is not owned by the current user and caching wheels has been disabled. check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
Collecting oursql
Downloading oursql-0.9.3.1.tar.bz2 (119kB)
100% |████████████████████████████████| 122kB 986kB/s
Installing collected packages: oursql
Running setup.py install for oursql
Complete output from command /usr/bin/python -c "import setuptools, tokenize;__file__='/tmp/pip-build-GbfPiA/oursql/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-avSCME-record/install-record.txt --single-version-externally-managed --compile:
cython not found, using previously-cython'd .c file.
running install
running build
running build_ext
warning: no usable mysql_config and no _winreg module to try; hopefully you have usable CFLAGS/LDFLAGS set.
building 'oursql' extension
creating build
creating build/temp.linux-x86_64-2.7
creating build/temp.linux-x86_64-2.7/oursqlx
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c oursqlx/oursql.c -o build/temp.linux-x86_64-2.7/oursqlx/oursql.o
oursqlx/oursql.c:4:20: fatal error: Python.h: No such file or directory
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Command "/usr/bin/python -c "import setuptools, tokenize;__file__='/tmp/pip-build-GbfPiA/oursql/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-avSCME-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-GbfPiA/oursql
What is going wrong? I am unable to find out.

the directory '/home/raghav/.cache/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
I think you installed some library into your virtualenv using sudo pip. So now some files are owned by the root user and your user cannot write there. You never should use virtualenv as root.
If you have a requirements.txt file I think the easiest way is to create a new virtualenv and install everything again. If you don't want/can't do this try to change the permissions with chown

You do not have python development libraries installed. Try installing it first, and then running pip.
sudo apt-get install python2.7-dev

Try this -
$ sudo apt-get install libmysqlclient-dev
$ sudo pip install oursql

How to install python cairo?

I am new to python3. I have created the virtual environment. I try to install the pycairo package using pip command. I need install python cairo. Please see the below info
pip install git+http://anongit.freedesktop.org/git/pycairo
Downloading/unpacking git+http://anongit.freedesktop.org/git/pycairo
Cloning http://anongit.freedesktop.org/git/pycairo to /tmp/pip-0c_foz-build
Running setup.py egg_info for package from git+http://anongit.freedesktop.org/git/pycairo
cairo >= 1.10.2 Successful
Installing collected packages: pycairo
Running setup.py install for pycairo
cairo >= 1.10.2 Successful
building 'cairo._cairo' extension
gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/python3.2mu -c src/cairomodule.c -o build/temp.linux-i686-3.2/src/cairomodule.o
src/cairomodule.c:22:20: fatal error: Python.h: No such file or directory
compilation terminated.
error: command 'gcc' failed with exit status 1
Complete output from command /home/nyros/Desktop/NewWeb/venv/bin/python3 -c "import setuptools;__file__='/tmp/pip-0c_foz-build/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-lo0egc-record/install-record.txt --single-version-externally-managed --install-headers /home/nyros/Desktop/NewWeb/venv/include/site/python3.2:
cairo >= 1.10.2 Successful
creating py3cairo.pc
creating src/config.h
running install
running build
running build_ext
building 'cairo._cairo' extension
creating build
creating build/temp.linux-i686-3.2
creating build/temp.linux-i686-3.2/src
gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/python3.2mu -c src/cairomodule.c -o build/temp.linux-i686-3.2/src/cairomodule.o
src/cairomodule.c:22:20: fatal error: Python.h: No such file or directory
compilation terminated.
error: command 'gcc' failed with exit status 1
----------------------------------------
Command /home/nyros/Desktop/NewWeb/venv/bin/python3 -c "import setuptools;__file__='/tmp/pip-0c_foz-build/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-lo0egc-record/install-record.txt --single-version-externally-managed --install-headers /home/nyros/Desktop/NewWeb/venv/include/site/python3.2 failed with error code 1 in /tmp/pip-0c_foz-build
Storing complete log in /home/nyros/.pip/pip.log
But I got the error. Please solve my problem. Thanks

I think this may solve your problem:
sudo apt-get install python3-dev
But I cannot guarantee that this will work 100% :-)