I'm having trouble installing scipy via the binaries provided at http://sourceforge.net/projects/scipy/files/scipy/
Double clicking on the mpkg file after mounting the dmg installer gives the following error:
"scipy 0.13.0 can't be installed on this disk. scipy requires System Python 2.7 to install"
However, I already have python 2.7 and numpy installed. The python 2.7 came default with OSX Lion, so I assume it is System Python. With other python modules, one normally can download the binary then run
python setup.py install
Is there a way to cd through the mpkg file and locate a setup.py? Any advice install via this dmg installer?
I know there are other ways to manage python modules, like port and brew. However, I already installed a bunch of packages through setup.py, and I couldn't figure out how to get port to recognize those packages (for example, it will try to reinstall python and numpy via port)
Thanks!
If you have Mavericks and XCode 5, then you'll have to install Command Line Tools manually from the Apple Developer Site. I found this helpful post
You've got a few misconceptions here.
With other python modules, one normally can download the binary then run python setup.py install
No, that's what you do with source packages.
Is there a way to cd through the mpkg file and locate a setup.py?
No. What's inside an mpkg are pkg files. Which are filled with xar archives filled with cpio archives. Inside there is the built version of SciPy—that is, the files that setup.py would have copied to your site-packages if you'd run it—not the source package.
But you can download the source package yourself.
Or, better, let pip (or easy_install, but pip is better) download and run the setup.py for you.
Any advice install via this dmg installer?
If it won't work, my advice would be to not use it, and instead install with pip.
This blog post explains it, but I'll give you the details relevant to you below.
I know there are other ways to manage python modules, like port and brew. However, I already installed a bunch of packages through setup.py, and I couldn't figure out how to get port to recognize those packages.
You can't. MacPorts will not touch your system Python; it builds its own separate Python 2.7, with a completely independent site-packages directory and everything else. You would have to reinstall everything for this second Python 2.7. And deal with the confusion of having two Python 2.7 installations on the same machine.
Don't do that unless you absolutely have to.
In fact, if you want to use Homebrew for anything (and you do, see below), uninstall MacPorts, unless you really need it for something.
So, here are the steps:
Uninstall MacPorts.
I assume you already have Xcode and its Command Line Tools.
I assume you already have Homebrew.
Install a Fortran compiler with brew install gfortran.
Lion's Python 2.7 comes with easy_install, but not pip. So sudo easy_install pip to fix that. While you're at it, I'd suggest sudo easy_install readline, because you'll want that for ipython, and it won't work right with pip.
Apple's pre-installed NumPy has to be upgraded, and rebuilt with Fortran support, to make SciPy work. Fix that with sudo pip install --upgrade --force-reinstall numpy.
If you want ipython, pandas, etc. sudo pip install each of them as well.
In case you're considering upgrading soon, the exact same steps worked for me with OS X 10.9.0, except for some extra work to get the Xcode 5 command line tools set up.
Related
I tried to run a python script on my mac computer, but I ended up in troubles as it needed to install pandas as a dependency.
I tried to get this dependency, but to do so I installed different components like brew, pip, wget and others including different versions of python using brew, .pkg package downloaded from python.org.
In the end, I was not able to run the script anyway.
Now I would like to sort out the things and have only one version of python (3 probably) working correctly.
Can you suggest me the way how to get the overview what I have installed on my computer and how can I clean it up?
Thank you in advance
Use brew list to see what you've installed with Brew. And Brew Uninstall as needed. Likewise, review the logs from wget to see where it installed things. Keep in mind that MacOS uses Python 2.7 for system critical tasks; it's baked-into the OS so don't touch it.
Anything you installed with pip is saved to the /site-packages directory of the Python version in which you installed it so it will disappear when you remove that version of Python.
The .pkg files installed directly into your Applications folder and can be deleted safely like any normal app.
I have an external package I want to install into my python virtualenv from a tar file.
What is the best way to install the package?
I've discovered 2 ways that can do it:
Extract the tar file, then run python setup.py install inside of the extracted directory.
pip install packagename.tar.gz from example # 7 in https://pip.pypa.io/en/stable/reference/pip_install/#examples
Is if there is any difference doing them in these 2 ways.
On the surface, both do the same thing: doing either python setup.py install or pip install <PACKAGE-NAME> will install your python package for you, with a minimum amount of fuss.
However, using pip offers some additional advantages that make it much nicer to use.
pip will automatically download all dependencies for a package for you. In contrast, if you use setup.py, you often have to manually search out and download dependencies, which is tedious and can become frustrating.
pip keeps track of various metadata that lets you easily uninstall and update packages with a single command: pip uninstall <PACKAGE-NAME> and pip install --upgrade <PACKAGE-NAME>. In contrast, if you install a package using setup.py, you have to manually delete and maintain a package by hand if you want to get rid of it, which could be potentially error-prone.
You no longer have to manually download your files. If you use setup.py, you have to visit the library's website, figure out where to download it, extract the file, run setup.py... In contrast, pip will automatically search the Python Package Index (PyPi) to see if the package exists there, and will automatically download, extract, and install the package for you. With a few exceptions, almost every single genuinely useful Python library can be found on PyPi.
pip will let you easily install wheels, which is the new standard of Python distribution. More info about wheels.
pip offers additional benefits that integrate well with using virtualenv, which is a program that lets you run multiple projects that require conflicting libraries and Python versions on your computer. More info.
pip is bundled by default with Python as of Python 2.7.9 on the Python 2.x series, and as of Python 3.4.0 on the Python 3.x series, making it even easier to use.
So basically, use pip. It only offers improvements over using python setup.py install.
If you're using an older version of Python, can't upgrade, and don't have pip installed, you can find more information about installing pip at the following links:
Official instructions on installing pip for all operating systems
Instructions on installing pip on Windows (including solutions to common problems)
Instructions on installing pip for Mac OX
pip, by itself, doesn't really require a tutorial. 90% of the time, the only command you really need is pip install <PACKAGE-NAME>. That said, if you're interested in learning more about the details of what exactly you can do with pip, see:
Quickstart guide
Official documentation.
It is also commonly recommended that you use pip and virtualenv together. If you're a beginner to Python, I personally think it'd be fine to start of with just using pip and install packages globally, but eventually I do think you should transition to using virtualenv as you tackle more serious projects.
If you'd like to learn more about using pip and virtualenv together, see:
Why you should be using pip and virtualenv
A non-magical introduction to Pip and Virtualenv for Python beginners
Virtual Environments
python setup.py install is the analog of make install: it’s a limited way to compile and copy files to destination directories. This doesn’t mean that it’s the best way to really install software on your system.
pip is a package manager, which can install, upgrade, list and uninstall packages, like familiar package managers including: dpkg, apt, yum, urpmi, ports etc. Under the hood, it will run python setup.py install, but with specific options to control how and where things end up installed.
In summary: use pip.
The question is about the preferred method to install a local tarball containing a python package, NOT about the advantage of uploading package to an indexing service like PyPi.
As lest I know some software distributor does not upload their package to PyPi, instead asking developers to download package from their website and install.
python setup.py install
This can work but not recommended. It's not necessary to unwrap the tarball file and go into it to run setup.py file.
pip install ../path/to/packagename.tar.gz
This is the way designed and preferred. Concise and align with PyPi-style packages.
More information about pip install can be found here: https://pip.readthedocs.io/en/stable/reference/pip_install/
I recently installed python 2.7.2 on my Mac running OSX 10.6.8. Previously, I had version 2.6. I set my path in .bash_profile as follows:
export PATH=/usr/local/bin:$PATH
export PATH=/usr/local/share/python:$PATH
so that when I run python it will refer to my new installation. It does.
I would also like to use pip with my new installation, but the problem is that I already have the current version of pip installed at
/usr/local/bin/pip.
I tried to re-install pip with:
easy_install pip
But, of course this does not put pip in the desired new directory
/usr/local/share/python/pip
but simply refers to the existing version in /usr/local/bin/pip.
Can someone tell me how to fix this?
I would like to then use pip to install NumPy and SciPy in the correct directory (I was having trouble getting the SciPy installation to work with my old version of python, hence the new install).
If you'd like, you can visit the website where I found instructions for installing python 2.7, creating/updating my .bash_profile, installing pip, and NumPy and SciPy. Might provide some insight, or I'm happy to give more details if needed. Thanks!
http://www.thisisthegreenroom.com/2011/installing-python-numpy-scipy-matplotlib-and-ipython-on-lion/#python
Install distribute as per the instructions at http://pypi.python.org/pypi/distribute .
Make sure you specify the full path to the python executable (/usr/local/share/python/python or smth in your case).
$ curl -O https://svn.apache.org/repos/asf/oodt/tools/oodtsite.publisher/trunk/distribute_setup.py
$ /usr/local/share/python/python distribute_setup.py
Then you should have /usr/local/share/python/easy_install.
After that, run:
$ /usr/local/share/python/easy_install pip
Then you should have /usr/local/share/python/pip.
Depending on the ordering of things in your PATH, either your old, or the newly installed pip is executed when you execute the pip command, so you either might have to adapt your PATH, or specify the full path to /usr/local/share/python/pip when installing eggs.
(shameless plug:
In any case, you might consider using virtualenv for installing packages into a "project" specific isolated environment, as opposed to installing them globally.)
I needed to uninstall brew's python.
Then, I was left with python v2.7.6
Next to install, pip I ran
sudo easy_install pip
installed fine and working
I had a similar issue, try this:
$ python -m pip install --upgrade --force-reinstall pip
This will force reinstall pip with whatever version of python you use including installing the binary.
A few days ago I had a friend who was starting Python Programming and needed help with the same issue: installing pip. There are debates over which one to choose between easy_install and pip and it seems everybody is heading the pip direction. Either way, installing either of them can be frustrating.
You can use this simple tutorial : installing pip package manager the easy way
Here are what you should keep in mind as you follow the above guide:
If you already have an older version installed, uninstall it or totally remove the python installation
Once that is cleared, download an install Python.
After that, download ez_setup.py file and save it to your desktop - easily accessible from the command line
Now run it from the command line and it will install easy_install for you after which,
You can use it to install pip.
Once again, you can do this or use the above link to find a simple step-by-step guide on how to get it installed on your computer.
Good luck.
Just so that people knew, ATM we can install PIP by downloading get-pip.py from the page with docs and run it like this:
c:\python27\python.exe get-pip.py
BTW, Python 3.4 comes with PIP pre-installed.
One of the command line options lets you choose where to install to.
--install-dir (-d) install package to DIR
So something like - # easy_install pip -d /usr/local/share/python
(Please correct me if I'm wrong.)
Just wanted to say that I found a way to get around my problem. I don't know that I can explain it perfectly, since I am not very good at understanding what I am doing with this stuff just yet! But, the problem seems to have been with my PATH. I removed the PATH that I posted in my original question, and then used easy_install pip. It went straight to python 2.7.2 (my new version) with no problem. I then successfully used pip to install NumPy and SciPy in the correct location, and they both work. Thanks to ErikAllik and FakeRainBrigand for taking the time to look into it!
I want to create a native Mac OS X package installer, the creation of the package is not really the problem, the real deal is the dependencies that have to get installed; I need to install Python, NumPy and Matplotlib (only if the required versions are not already installed).
I have heard really bad things about the Package Maker app, I've been reading a little and have already even found a nice tutorial although it is quite outdated. As a reference, here's Apple's reference guide.
I imagine I would have to use the uncompiled source provided from each of these three projects.
It would really help me to see the PackageMaker file that is used to create the official Python installer, if such file is available somewhere, please point me to it.
Anyway:
What would be the best way to do this? Is using a PackageMaker silly for this purpose? Any other literature that would help me?
Extra:
What would be the easiest way to test my installers?
I'm assuming that you want to install the packages that you mentioned because you are developing a Python application. Have you looked at PyInstaller? It "converts (packages) Python programs into stand-alone executables, under Windows, Linux, Mac OS X, Solaris and AIX", so you don't have to worry about what's installed on the target system.
And if you use PyInstaller, the "extra" would be easy. Simply copy the resulting executable to any other machine and test it out by executing it.
Something like /tmp/install.sh:
cd ~
curl -C - -O http://pypi.python.org/packages/source/v/virtualenv/virtualenv-1.7.tar.gz
tar -xzf virtualenv-1.7.tar.gz
cd ./virtualenv-1.7
python setup.py install
cd ~
rm virtualenv-1.7.tar.gz
rm -rd ./virtualenv-1.7
virtualenv myenvfolder
source myenvfolder/bin/activate
easy_install pip
pip install NumPy
pip install Matplotlib
And then:
chmod +x /tmp/install.sh;
/tmp/install.sh
Maybe you can use macports binary-packages or binary-archives?
and maybe fabric or puppet.
Puppet on OSX.
Macports is as simple as apt-get to use and takes care of all dependencies. By default macports installs to /opt/local so installs don't interfere with apple installs. Default is to compile from source. Some packages are big and have a lot of dependencies so compiling takes a lot of time and all the recourse on the machine. If you make a binary-archive you only have to compile ones pr machine arcithecture/osx-version. Then you only need to install macports and sett up a share with binary-archives. With fabric or puppet you can automate builds and distribution.
Then if you in the near future find out that you need pytable or numexpr it is as simple as: sudo port install py26-tables
and if other people need it to you can make binary-archive of it and put it on the share.
To install Python's latest version you can go here, and you can install NumPy and matplotlib directly in your terminal with these commands:
pip3 install matplotlib
pip3 install numpy
Is there no sane way to peform a scripted install of binary python packages for windows? Unfortunately it seems like several essential windows python packages like pywin32 and py2exe are only available as EXE's not MSI's (and as far as I know only the latter are scriptable). Easy_install/pip also seems no use since they apparently only find source packages and then try to compile locally which is obviously unsatisfactory.
Am I missing something?
You can download the source code of pywin32 at sourceforge.net/projects/pywin32/files/ and then build it as MSI file yourself. Therefore you need setuptools (only for building). Use the command "setup.py bdist_msi" to create a MSI installer in the "dist" directory.
The same procedure should work for all Windows-compatible packages.
Current easy_install can install the pre-build ".exe" installers silently, i.e.;
C:\Python27\Scripts\easy_install.exe pywin32-220.win32-py2.7.exe
will install pywin32.
This also enables possibility to remove using pip;
pip uninstall pywin32 -y
uninstalls pywin32
As said in a linked answer you can succeed with using easy_install if the installer was created with distutils.
If you want scripted automation of installs on Windows, look into AutoIt.